Clone BS09412 Report

Search the DGRC for BS09412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPPO1-RA
Protein status:BS09412.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09412.3prime Sequence

912 bp (878 high quality bases) assembled on 2006-04-19

> BS09412.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGTCAATCACACGATCATTGAAGACA
ATCCTTAAATCGGTCTTGGCCATGTTGCCAAAGGCACCGACCAATTCGGT
GAGATTGGCATTGGGCAGGCGCCTATCGAAGGGATAGCCCATGGTGCGTC
TGTCAGGATACAATTTGTCCTTCAGACCACAGAACGAGTACGCCGTGCTG
CAGGCATCGTTGGGTGTTTTGGGCTGCTCAACGGAGTCCTGCGAGTAATC
GGAAATCATGACGAACAGGTCGAAGACCATTCCCTGGGCATTGCCCTTGG
GCAGCAGGAGATGCTGTGGCCACCCACATCCGCAAAACTTGAAGCGTGCC
AACTCATCGGCGGCCTTGGGCTGATAGTCTGCTCCAACCGGGCGGAATGA
GCGCTCGAAGGGAATGGCCACCGAGGACTCTGTCGACTGGCGGCGTATGG
TGTTCTCACCAGGCACCAAATCAACTGTGAACTTGTCCATTTCGATGGCC
AACAGTCGCTGCTCCTCCAGATTCAAAGCCTGATTACGCTCATCCACCTT
GGGGCAGATGAAGATACGGCAAGTACCCGTTCGTCTGGCTCCATTATTGG
TCACATTGAATGTATAAGTGAAGGGGGCATTCTGGAGATGGGTGAACGAG
GCGAATATGTTGCGATCGGTCGTTGGTCCAAAGTCCAGGCCAGCTGCCAA
GTCGGCACTCGACTTCTGCCAGTAGGTCAACAGGGTGTTGGCCTTGGTAT
TGGACTTGCCAATCTTGGCCTCAATGTAGTCCACGGTAATACCATCGAAG
TTAAGCTCACCGGCATTGTACGGGTTCAGGCGAGTCTTGAATTTGTTGAA
CACCGTGTCGATGAATCCGTGCCACCTGTAGAAGATTGGATCCCTCATGG
CCGTGGTCACAT

BS09412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5779-PA 2073 Bc-RA 1178..2073 912..17 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
PPO1-RA 2338 CG42639-RA 1251..2147 912..16 4485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17888080..17888523 469..912 2220 100 Plus
2R 25286936 2R 17887670..17887922 216..468 1265 100 Plus
2R 25286936 2R 17887411..17887610 16..215 1000 100 Plus
Blast to na_te.dros performed 2015-02-10 18:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 732..798 673..606 112 64.7 Minus

BS09412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:08:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:15 Download gff for BS09412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5779-PA 1178..2073 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:07 Download gff for BS09412.3prime
Subject Subject Range Query Range Percent Splice Strand
proPO-A1-RA 1251..2155 8..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:24 Download gff for BS09412.3prime
Subject Subject Range Query Range Percent Splice Strand
PPO1-RA 1251..2155 8..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:24 Download gff for BS09412.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17887403..17887610 8..215 98 <- Plus
2R 17887670..17887922 216..468 100 <- Plus
2R 17888080..17888523 469..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:07 Download gff for BS09412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13774908..13775115 8..215 98 <- Plus
arm_2R 13775175..13775427 216..468 100 <- Plus
arm_2R 13775585..13776028 469..912 100   Plus

BS09412.5prime Sequence

880 bp (803 high quality bases) assembled on 2006-04-19

> BS09412.5prime
GAAGTTATCAGTCGACATGACTAACACGGATCTGAAAGCCTTGGAACTTA
TGTTCCAGCGACCCCTGGAACCGGCATTCACCACTCGTGACTCCGGAAAA
ACTGTATTGGAACTGCCCGATTCCTTCTATACGGATCGCTATCGCAATGA
CACCGAGGAGGTGGGCAATCGATTCTCTAAGGACGTGGATCTGAAGATCC
CAATTCAGGAGTTGAGCAACGTTCCCAGTCTGGAGTTCACCAAAAAGATT
GGTCTCAAGAATCAATTTTCGCTGTTTAACAATCGCCATCGTGAGATCGC
CAGCGAGCTGATCACCCTCTTCATGAGCGCACCAAATCTCAGACAATTCG
TGTCGCTTTCCGTTTACACCAAGGATCGTGTGAATCCTGTGTTGTTCCAA
TACGCCTATGCCGTCGCCGTTGCCCATCGCCCGGATACGCGTGAAGTGCC
CATTACCAACATTTCCCAGATCTTTCCGAGCAACTTTGTAGAACCTTCCG
CCTTCCGGGATGCCCGTCAGGAAGCTTCTGTTATTGGAGAGAGCGGCGCT
CGTGTCCATGTGGACATTCCGCAAAACTACACGGCCTCGGATCGCGAGGA
TGAACAGCGCCTGGCGTACTTCCGTGAGGACATCGGTGTTAATAGCCATC
ATTGGCACTGGCACTTGGTCTACCCGACCACCGGACCCACGGAGGTGGTC
AACAAGGATCGTCGTGGCGAGCTCTTCTACTACATGCACCACCAGATACT
CGCGCGCTACAATGTGGAGCGCTTCTGCAACAATCTGAAGAAGGTTCAGC
CGCTGAACAATCTGCGTGTGGAGGTTCCCGAGGGCTACTTCCCCCAGATC
CTGTCCAGCACGAATAACCGCACCTATCCC

BS09412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5779-PA 2073 Bc-RA 1..864 17..880 4295 99.8 Plus
CG8193-PA 2055 CG8193-RA 678..716 703..741 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
PPO1-RA 2338 CG42639-RA 73..937 16..880 4310 99.9 Plus
PPO2-RA 2280 CG8193-RA 767..913 703..849 315 81 Plus
PPO3-RA 2228 CG42640-RA 740..809 702..771 200 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17888911..17889283 880..508 1850 99.7 Minus
2R 25286936 2R 17889544..17889901 373..16 1790 100 Minus
2R 25286936 2R 17889351..17889487 509..373 685 100 Minus
2R 25286936 2R 9043797..9043943 849..703 315 81 Minus
2R 25286936 2R 23065508..23065577 702..771 200 85.7 Plus
Blast to na_te.dros performed on 2015-02-09 09:28:56 has no hits.

BS09412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:08:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:16 Download gff for BS09412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5779-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:50 Download gff for BS09412.5prime
Subject Subject Range Query Range Percent Splice Strand
proPO-A1-RA 73..937 16..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:46 Download gff for BS09412.5prime
Subject Subject Range Query Range Percent Splice Strand
PPO1-RA 73..937 16..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:46 Download gff for BS09412.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17888911..17889282 509..880 99 <- Minus
2R 17889352..17889487 373..508 100 <- Minus
2R 17889545..17889901 16..372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:50 Download gff for BS09412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13776416..13776787 509..880 99 <- Minus
arm_2R 13776857..13776992 373..508 100 <- Minus
arm_2R 13777050..13777406 16..372 100   Minus

BS09412.complete Sequence

2105 bp assembled on 2008-01-16

GenBank Submission: FJ636411

> BS09412.complete
GAAGTTATCAGTCGACATGACTAACACGGATCTGAAAGCCTTGGAACTTA
TGTTCCAGCGACCCCTGGAACCGGCATTCACCACTCGTGACTCCGGAAAA
ACTGTATTGGAACTGCCCGATTCCTTCTATACGGATCGCTATCGCAATGA
CACCGAGGAGGTGGGCAATCGATTCTCTAAGGACGTGGATCTGAAGATCC
CAATTCAGGAGTTGAGCAACGTTCCCAGTCTGGAGTTCACCAAAAAGATT
GGTCTCAAGAATCAATTTTCGCTGTTTAACAATCGCCATCGTGAGATCGC
CAGCGAGCTGATCACCCTCTTCATGAGCGCACCAAATCTCAGACAATTCG
TGTCGCTTTCCGTTTACACCAAGGATCGTGTGAATCCTGTGTTGTTCCAA
TACGCCTATGCCGTCGCCGTTGCCCATCGCCCGGATACGCGTGAAGTGCC
CATTACCAACATTTCCCAGATCTTTCCGAGCAACTTTGTAGAACCTTCCG
CCTTCCGGGATGCCCGTCAGGAAGCTTCTGTTATTGGAGAGAGCGGCGCT
CGTGTCCATGTGGACATTCCGCAAAACTACACGGCCTCGGATCGCGAGGA
TGAACAGCGCCTGGCGTACTTCCGTGAGGACATCGGTGTTAATAGCCATC
ATTGGCACTGGCACTTGGTCTACCCGACCACCGGACCCACGGAGGTGGTC
AACAAGGATCGTCGTGGCGAGCTCTTCTACTACATGCACCACCAGATACT
CGCGCGCTACAATGTGGAGCGCTTCTGCAACAATCTGAAGAAGGTTCAGC
CGCTGAACAATCTGCGTGTGGAGGTTCCCGAGGGCTACTTCCCCAAGATC
CTGTCCAGCACGAATAACCGCACCTATCCCGCCCGAGTGACCAACCAAAA
GCTGAGGGACGTGGACCGCCATGATGGGCGTGTGGAGATCTCCGATGTGG
AGCGCTGGCGTGATCGCGTGCTGGCTGCCATAGATCAAGGATACGTTGAA
GATTCTTCTGGCAATCGTATACCATTGGACGAAGTTCGTGGCATCGATAT
CCTGGGCAACATGATTGAGGCATCGCCAGTCCTATCCATCAACTATAATT
TCTATGGCAATCTACACAACGAGGGGCACAACATAATCTCCTTTGCCCAC
GATCCCGATTACCGTCACTTGGAGGAATTCGGTGTGATGGGCGATGTGAC
CACGGCCATGAGGGATCCAATCTTCTACAGGTGGCACGGATTCATCGACA
CGGTGTTCAACAAATTCAAGACTCGCCTGAACCCGTACAATGCCGGTGAG
CTTAACTTCGATGGTATTACCGTGGACTACATTGAGGCCAAGATTGGCAA
GTCCAATACCAAGGCCAACACCCTGTTGACCTACTGGCAGAAGTCGAGTG
CCGACTTGGCAGCTGGCCTGGACTTTGGACCAACGACCGATCGCAACATA
TTCGCCTCGTTCACCCATCTCCAGAATGCCCCCTTCACTTATACATTCAA
TGTGACCAATAATGGAGCCAGACGAACGGGTACTTGCCGTATCTTCATCT
GCCCCAAGGTGGATGAGCGTAATCAGGCTTTGAATCTGGAGGAGCAGCGA
CTGTTGGCCATCGAAATGGACAAGTTCACAGTTGATTTGGTGCCTGGTGA
GAACACCATACGCCGCCAGTCGACAGAGTCCTCGGTGGCCATTCCCTTCG
AGCGCTCATTCCGCCCGGTTGGAGCAGACTATCAGCCCAAGGCCGCCGAT
GAGTTGGCACGCTTCAAGTTTTGCGGATGTGGGTGGCCACAGCATCTCCT
GCTGCCCAAGGGCAATGCCCAGGGAATGGTCTTCGACCTGTTCGTCATGA
TTTCCGATTACTCGCAGGACTCCGTTGAGCAGCCCAAAACACCCAACGAT
GCCTGCAGCACGGCGTACTCGTTCTGTGGTCTGAAGGACAAATTGTATCC
TGACAGACGCACCATGGGCTATCCCTTCGATAGGCGCCTGCCCAATGCCA
ATCTCACCGAATTGGTCGGTGCCTTTGGCAACATGGCCAAGACCGATTTA
AGGATTGTCTTCAATGATCGTGTGATTGACAAGGCCTAGAAGCTTTCTAG
ACCAT

BS09412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
PPO1-RA 2073 CG42639-PA 1..2073 17..2089 10365 100 Plus
PPO2-RA 2055 CG8193-PA 678..824 703..849 330 81.6 Plus
PPO3-RA 2052 CG42640-PA 680..749 702..771 200 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
PPO1-RA 2338 CG42639-RA 73..2147 16..2090 10375 100 Plus
PPO2-RA 2280 CG8193-RA 767..913 703..849 330 81.6 Plus
PPO3-RA 2228 CG42640-RA 740..809 702..771 200 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17888080..17888713 1637..1004 3170 100 Minus
2R 25286936 2R 17888788..17889283 1003..508 2480 100 Minus
2R 25286936 2R 17889544..17889901 373..16 1790 100 Minus
2R 25286936 2R 17887670..17887922 1890..1638 1265 100 Minus
2R 25286936 2R 17887411..17887610 2090..1891 1000 100 Minus
2R 25286936 2R 17889351..17889487 509..373 685 100 Minus
2R 25286936 2R 9043797..9043943 849..703 330 81.6 Minus
2R 25286936 2R 23065508..23065577 702..771 200 85.7 Plus
Blast to na_te.dros performed on 2014-11-26 15:21:28 has no hits.

BS09412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:06 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
Bc-RA 1..2073 17..2089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:43 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
Bc-RA 73..2145 17..2089 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:58 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
proPO-A1-RA 74..2146 17..2089 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:06 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
Bc-RA 72..2154 16..2098 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:29 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
PPO1-RA 74..2146 17..2089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:29 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17887412..17887610 1891..2089 100 <- Minus
2R 17887670..17887922 1638..1890 100 <- Minus
2R 17888080..17888713 1004..1637 100 <- Minus
2R 17888788..17889282 509..1003 100 <- Minus
2R 17889352..17889487 373..508 100 <- Minus
2R 17889545..17889900 17..372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:58 Download gff for BS09412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13774917..13775115 1891..2089 100 <- Minus
arm_2R 13775175..13775427 1638..1890 100 <- Minus
arm_2R 13775585..13776218 1004..1637 100 <- Minus
arm_2R 13776293..13776787 509..1003 100 <- Minus
arm_2R 13776857..13776992 373..508 100 <- Minus
arm_2R 13777050..13777405 17..372 100   Minus

BS09412.pep Sequence

Translation from 16 to 2088

> BS09412.pep
MTNTDLKALELMFQRPLEPAFTTRDSGKTVLELPDSFYTDRYRNDTEEVG
NRFSKDVDLKIPIQELSNVPSLEFTKKIGLKNQFSLFNNRHREIASELIT
LFMSAPNLRQFVSLSVYTKDRVNPVLFQYAYAVAVAHRPDTREVPITNIS
QIFPSNFVEPSAFRDARQEASVIGESGARVHVDIPQNYTASDREDEQRLA
YFREDIGVNSHHWHWHLVYPTTGPTEVVNKDRRGELFYYMHHQILARYNV
ERFCNNLKKVQPLNNLRVEVPEGYFPKILSSTNNRTYPARVTNQKLRDVD
RHDGRVEISDVERWRDRVLAAIDQGYVEDSSGNRIPLDEVRGIDILGNMI
EASPVLSINYNFYGNLHNEGHNIISFAHDPDYRHLEEFGVMGDVTTAMRD
PIFYRWHGFIDTVFNKFKTRLNPYNAGELNFDGITVDYIEAKIGKSNTKA
NTLLTYWQKSSADLAAGLDFGPTTDRNIFASFTHLQNAPFTYTFNVTNNG
ARRTGTCRIFICPKVDERNQALNLEEQRLLAIEMDKFTVDLVPGENTIRR
QSTESSVAIPFERSFRPVGADYQPKAADELARFKFCGCGWPQHLLLPKGN
AQGMVFDLFVMISDYSQDSVEQPKTPNDACSTAYSFCGLKDKLYPDRRTM
GYPFDRRLPNANLTELVGAFGNMAKTDLRIVFNDRVIDKA*

BS09412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
PPO1-PA 690 CG42639-PA 1..690 1..690 3650 100 Plus
PPO2-PA 684 CG8193-PA 3..682 5..689 1762 49.3 Plus
PPO3-PA 683 CG2952-PA 3..672 5..685 1656 47.7 Plus
Lsp2-PB 701 CG6806-PB 97..671 84..656 452 27.4 Plus
Lsp2-PA 701 CG6806-PA 97..671 84..656 452 27.4 Plus