Clone Sequence Records
BS09412.3prime Sequence
912 bp (878 high quality bases) assembled on 2006-04-19
> BS09412.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGTCAATCACACGATCATTGAAGACA
ATCCTTAAATCGGTCTTGGCCATGTTGCCAAAGGCACCGACCAATTCGGT
GAGATTGGCATTGGGCAGGCGCCTATCGAAGGGATAGCCCATGGTGCGTC
TGTCAGGATACAATTTGTCCTTCAGACCACAGAACGAGTACGCCGTGCTG
CAGGCATCGTTGGGTGTTTTGGGCTGCTCAACGGAGTCCTGCGAGTAATC
GGAAATCATGACGAACAGGTCGAAGACCATTCCCTGGGCATTGCCCTTGG
GCAGCAGGAGATGCTGTGGCCACCCACATCCGCAAAACTTGAAGCGTGCC
AACTCATCGGCGGCCTTGGGCTGATAGTCTGCTCCAACCGGGCGGAATGA
GCGCTCGAAGGGAATGGCCACCGAGGACTCTGTCGACTGGCGGCGTATGG
TGTTCTCACCAGGCACCAAATCAACTGTGAACTTGTCCATTTCGATGGCC
AACAGTCGCTGCTCCTCCAGATTCAAAGCCTGATTACGCTCATCCACCTT
GGGGCAGATGAAGATACGGCAAGTACCCGTTCGTCTGGCTCCATTATTGG
TCACATTGAATGTATAAGTGAAGGGGGCATTCTGGAGATGGGTGAACGAG
GCGAATATGTTGCGATCGGTCGTTGGTCCAAAGTCCAGGCCAGCTGCCAA
GTCGGCACTCGACTTCTGCCAGTAGGTCAACAGGGTGTTGGCCTTGGTAT
TGGACTTGCCAATCTTGGCCTCAATGTAGTCCACGGTAATACCATCGAAG
TTAAGCTCACCGGCATTGTACGGGTTCAGGCGAGTCTTGAATTTGTTGAA
CACCGTGTCGATGAATCCGTGCCACCTGTAGAAGATTGGATCCCTCATGG
CCGTGGTCACAT
BS09412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5779-PA | 2073 | Bc-RA | 1178..2073 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPO1-RA | 2338 | CG42639-RA | 1251..2147 | 912..16 | 4485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17888080..17888523 | 469..912 | 2220 | 100 | Plus |
2R | 25286936 | 2R | 17887670..17887922 | 216..468 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 17887411..17887610 | 16..215 | 1000 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 732..798 | 673..606 | 112 | 64.7 | Minus |
BS09412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:08:43 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:15 Download gff for
BS09412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5779-PA | 1178..2073 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:07 Download gff for
BS09412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
proPO-A1-RA | 1251..2155 | 8..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:24 Download gff for
BS09412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPO1-RA | 1251..2155 | 8..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:24 Download gff for
BS09412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17887403..17887610 | 8..215 | 98 | <- | Plus |
2R | 17887670..17887922 | 216..468 | 100 | <- | Plus |
2R | 17888080..17888523 | 469..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:07 Download gff for
BS09412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13774908..13775115 | 8..215 | 98 | <- | Plus |
arm_2R | 13775175..13775427 | 216..468 | 100 | <- | Plus |
arm_2R | 13775585..13776028 | 469..912 | 100 | | Plus |
BS09412.5prime Sequence
880 bp (803 high quality bases) assembled on 2006-04-19
> BS09412.5prime
GAAGTTATCAGTCGACATGACTAACACGGATCTGAAAGCCTTGGAACTTA
TGTTCCAGCGACCCCTGGAACCGGCATTCACCACTCGTGACTCCGGAAAA
ACTGTATTGGAACTGCCCGATTCCTTCTATACGGATCGCTATCGCAATGA
CACCGAGGAGGTGGGCAATCGATTCTCTAAGGACGTGGATCTGAAGATCC
CAATTCAGGAGTTGAGCAACGTTCCCAGTCTGGAGTTCACCAAAAAGATT
GGTCTCAAGAATCAATTTTCGCTGTTTAACAATCGCCATCGTGAGATCGC
CAGCGAGCTGATCACCCTCTTCATGAGCGCACCAAATCTCAGACAATTCG
TGTCGCTTTCCGTTTACACCAAGGATCGTGTGAATCCTGTGTTGTTCCAA
TACGCCTATGCCGTCGCCGTTGCCCATCGCCCGGATACGCGTGAAGTGCC
CATTACCAACATTTCCCAGATCTTTCCGAGCAACTTTGTAGAACCTTCCG
CCTTCCGGGATGCCCGTCAGGAAGCTTCTGTTATTGGAGAGAGCGGCGCT
CGTGTCCATGTGGACATTCCGCAAAACTACACGGCCTCGGATCGCGAGGA
TGAACAGCGCCTGGCGTACTTCCGTGAGGACATCGGTGTTAATAGCCATC
ATTGGCACTGGCACTTGGTCTACCCGACCACCGGACCCACGGAGGTGGTC
AACAAGGATCGTCGTGGCGAGCTCTTCTACTACATGCACCACCAGATACT
CGCGCGCTACAATGTGGAGCGCTTCTGCAACAATCTGAAGAAGGTTCAGC
CGCTGAACAATCTGCGTGTGGAGGTTCCCGAGGGCTACTTCCCCCAGATC
CTGTCCAGCACGAATAACCGCACCTATCCC
BS09412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5779-PA | 2073 | Bc-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG8193-PA | 2055 | CG8193-RA | 678..716 | 703..741 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPO1-RA | 2338 | CG42639-RA | 73..937 | 16..880 | 4310 | 99.9 | Plus |
PPO2-RA | 2280 | CG8193-RA | 767..913 | 703..849 | 315 | 81 | Plus |
PPO3-RA | 2228 | CG42640-RA | 740..809 | 702..771 | 200 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17888911..17889283 | 880..508 | 1850 | 99.7 | Minus |
2R | 25286936 | 2R | 17889544..17889901 | 373..16 | 1790 | 100 | Minus |
2R | 25286936 | 2R | 17889351..17889487 | 509..373 | 685 | 100 | Minus |
2R | 25286936 | 2R | 9043797..9043943 | 849..703 | 315 | 81 | Minus |
2R | 25286936 | 2R | 23065508..23065577 | 702..771 | 200 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:28:56 has no hits.
BS09412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:08:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:16 Download gff for
BS09412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5779-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:50 Download gff for
BS09412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
proPO-A1-RA | 73..937 | 16..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:46 Download gff for
BS09412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPO1-RA | 73..937 | 16..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:46 Download gff for
BS09412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17888911..17889282 | 509..880 | 99 | <- | Minus |
2R | 17889352..17889487 | 373..508 | 100 | <- | Minus |
2R | 17889545..17889901 | 16..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:50 Download gff for
BS09412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13776416..13776787 | 509..880 | 99 | <- | Minus |
arm_2R | 13776857..13776992 | 373..508 | 100 | <- | Minus |
arm_2R | 13777050..13777406 | 16..372 | 100 | | Minus |
BS09412.complete Sequence
2105 bp assembled on 2008-01-16
GenBank Submission: FJ636411
> BS09412.complete
GAAGTTATCAGTCGACATGACTAACACGGATCTGAAAGCCTTGGAACTTA
TGTTCCAGCGACCCCTGGAACCGGCATTCACCACTCGTGACTCCGGAAAA
ACTGTATTGGAACTGCCCGATTCCTTCTATACGGATCGCTATCGCAATGA
CACCGAGGAGGTGGGCAATCGATTCTCTAAGGACGTGGATCTGAAGATCC
CAATTCAGGAGTTGAGCAACGTTCCCAGTCTGGAGTTCACCAAAAAGATT
GGTCTCAAGAATCAATTTTCGCTGTTTAACAATCGCCATCGTGAGATCGC
CAGCGAGCTGATCACCCTCTTCATGAGCGCACCAAATCTCAGACAATTCG
TGTCGCTTTCCGTTTACACCAAGGATCGTGTGAATCCTGTGTTGTTCCAA
TACGCCTATGCCGTCGCCGTTGCCCATCGCCCGGATACGCGTGAAGTGCC
CATTACCAACATTTCCCAGATCTTTCCGAGCAACTTTGTAGAACCTTCCG
CCTTCCGGGATGCCCGTCAGGAAGCTTCTGTTATTGGAGAGAGCGGCGCT
CGTGTCCATGTGGACATTCCGCAAAACTACACGGCCTCGGATCGCGAGGA
TGAACAGCGCCTGGCGTACTTCCGTGAGGACATCGGTGTTAATAGCCATC
ATTGGCACTGGCACTTGGTCTACCCGACCACCGGACCCACGGAGGTGGTC
AACAAGGATCGTCGTGGCGAGCTCTTCTACTACATGCACCACCAGATACT
CGCGCGCTACAATGTGGAGCGCTTCTGCAACAATCTGAAGAAGGTTCAGC
CGCTGAACAATCTGCGTGTGGAGGTTCCCGAGGGCTACTTCCCCAAGATC
CTGTCCAGCACGAATAACCGCACCTATCCCGCCCGAGTGACCAACCAAAA
GCTGAGGGACGTGGACCGCCATGATGGGCGTGTGGAGATCTCCGATGTGG
AGCGCTGGCGTGATCGCGTGCTGGCTGCCATAGATCAAGGATACGTTGAA
GATTCTTCTGGCAATCGTATACCATTGGACGAAGTTCGTGGCATCGATAT
CCTGGGCAACATGATTGAGGCATCGCCAGTCCTATCCATCAACTATAATT
TCTATGGCAATCTACACAACGAGGGGCACAACATAATCTCCTTTGCCCAC
GATCCCGATTACCGTCACTTGGAGGAATTCGGTGTGATGGGCGATGTGAC
CACGGCCATGAGGGATCCAATCTTCTACAGGTGGCACGGATTCATCGACA
CGGTGTTCAACAAATTCAAGACTCGCCTGAACCCGTACAATGCCGGTGAG
CTTAACTTCGATGGTATTACCGTGGACTACATTGAGGCCAAGATTGGCAA
GTCCAATACCAAGGCCAACACCCTGTTGACCTACTGGCAGAAGTCGAGTG
CCGACTTGGCAGCTGGCCTGGACTTTGGACCAACGACCGATCGCAACATA
TTCGCCTCGTTCACCCATCTCCAGAATGCCCCCTTCACTTATACATTCAA
TGTGACCAATAATGGAGCCAGACGAACGGGTACTTGCCGTATCTTCATCT
GCCCCAAGGTGGATGAGCGTAATCAGGCTTTGAATCTGGAGGAGCAGCGA
CTGTTGGCCATCGAAATGGACAAGTTCACAGTTGATTTGGTGCCTGGTGA
GAACACCATACGCCGCCAGTCGACAGAGTCCTCGGTGGCCATTCCCTTCG
AGCGCTCATTCCGCCCGGTTGGAGCAGACTATCAGCCCAAGGCCGCCGAT
GAGTTGGCACGCTTCAAGTTTTGCGGATGTGGGTGGCCACAGCATCTCCT
GCTGCCCAAGGGCAATGCCCAGGGAATGGTCTTCGACCTGTTCGTCATGA
TTTCCGATTACTCGCAGGACTCCGTTGAGCAGCCCAAAACACCCAACGAT
GCCTGCAGCACGGCGTACTCGTTCTGTGGTCTGAAGGACAAATTGTATCC
TGACAGACGCACCATGGGCTATCCCTTCGATAGGCGCCTGCCCAATGCCA
ATCTCACCGAATTGGTCGGTGCCTTTGGCAACATGGCCAAGACCGATTTA
AGGATTGTCTTCAATGATCGTGTGATTGACAAGGCCTAGAAGCTTTCTAG
ACCAT
BS09412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPO1-RA | 2073 | CG42639-PA | 1..2073 | 17..2089 | 10365 | 100 | Plus |
PPO2-RA | 2055 | CG8193-PA | 678..824 | 703..849 | 330 | 81.6 | Plus |
PPO3-RA | 2052 | CG42640-PA | 680..749 | 702..771 | 200 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPO1-RA | 2338 | CG42639-RA | 73..2147 | 16..2090 | 10375 | 100 | Plus |
PPO2-RA | 2280 | CG8193-RA | 767..913 | 703..849 | 330 | 81.6 | Plus |
PPO3-RA | 2228 | CG42640-RA | 740..809 | 702..771 | 200 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17888080..17888713 | 1637..1004 | 3170 | 100 | Minus |
2R | 25286936 | 2R | 17888788..17889283 | 1003..508 | 2480 | 100 | Minus |
2R | 25286936 | 2R | 17889544..17889901 | 373..16 | 1790 | 100 | Minus |
2R | 25286936 | 2R | 17887670..17887922 | 1890..1638 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 17887411..17887610 | 2090..1891 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 17889351..17889487 | 509..373 | 685 | 100 | Minus |
2R | 25286936 | 2R | 9043797..9043943 | 849..703 | 330 | 81.6 | Minus |
2R | 25286936 | 2R | 23065508..23065577 | 702..771 | 200 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:21:28 has no hits.
BS09412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:06 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bc-RA | 1..2073 | 17..2089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:43 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bc-RA | 73..2145 | 17..2089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:58 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
proPO-A1-RA | 74..2146 | 17..2089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:06 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bc-RA | 72..2154 | 16..2098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:29 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PPO1-RA | 74..2146 | 17..2089 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:29 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17887412..17887610 | 1891..2089 | 100 | <- | Minus |
2R | 17887670..17887922 | 1638..1890 | 100 | <- | Minus |
2R | 17888080..17888713 | 1004..1637 | 100 | <- | Minus |
2R | 17888788..17889282 | 509..1003 | 100 | <- | Minus |
2R | 17889352..17889487 | 373..508 | 100 | <- | Minus |
2R | 17889545..17889900 | 17..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:58 Download gff for
BS09412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13774917..13775115 | 1891..2089 | 100 | <- | Minus |
arm_2R | 13775175..13775427 | 1638..1890 | 100 | <- | Minus |
arm_2R | 13775585..13776218 | 1004..1637 | 100 | <- | Minus |
arm_2R | 13776293..13776787 | 509..1003 | 100 | <- | Minus |
arm_2R | 13776857..13776992 | 373..508 | 100 | <- | Minus |
arm_2R | 13777050..13777405 | 17..372 | 100 | | Minus |
BS09412.pep Sequence
Translation from 16 to 2088
> BS09412.pep
MTNTDLKALELMFQRPLEPAFTTRDSGKTVLELPDSFYTDRYRNDTEEVG
NRFSKDVDLKIPIQELSNVPSLEFTKKIGLKNQFSLFNNRHREIASELIT
LFMSAPNLRQFVSLSVYTKDRVNPVLFQYAYAVAVAHRPDTREVPITNIS
QIFPSNFVEPSAFRDARQEASVIGESGARVHVDIPQNYTASDREDEQRLA
YFREDIGVNSHHWHWHLVYPTTGPTEVVNKDRRGELFYYMHHQILARYNV
ERFCNNLKKVQPLNNLRVEVPEGYFPKILSSTNNRTYPARVTNQKLRDVD
RHDGRVEISDVERWRDRVLAAIDQGYVEDSSGNRIPLDEVRGIDILGNMI
EASPVLSINYNFYGNLHNEGHNIISFAHDPDYRHLEEFGVMGDVTTAMRD
PIFYRWHGFIDTVFNKFKTRLNPYNAGELNFDGITVDYIEAKIGKSNTKA
NTLLTYWQKSSADLAAGLDFGPTTDRNIFASFTHLQNAPFTYTFNVTNNG
ARRTGTCRIFICPKVDERNQALNLEEQRLLAIEMDKFTVDLVPGENTIRR
QSTESSVAIPFERSFRPVGADYQPKAADELARFKFCGCGWPQHLLLPKGN
AQGMVFDLFVMISDYSQDSVEQPKTPNDACSTAYSFCGLKDKLYPDRRTM
GYPFDRRLPNANLTELVGAFGNMAKTDLRIVFNDRVIDKA*
BS09412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PPO1-PA | 690 | CG42639-PA | 1..690 | 1..690 | 3650 | 100 | Plus |
PPO2-PA | 684 | CG8193-PA | 3..682 | 5..689 | 1762 | 49.3 | Plus |
PPO3-PA | 683 | CG2952-PA | 3..672 | 5..685 | 1656 | 47.7 | Plus |
Lsp2-PB | 701 | CG6806-PB | 97..671 | 84..656 | 452 | 27.4 | Plus |
Lsp2-PA | 701 | CG6806-PA | 97..671 | 84..656 | 452 | 27.4 | Plus |