Clone Sequence Records
BS09413.3prime Sequence
944 bp (850 high quality bases) assembled on 2006-04-19
> BS09413.3prime
ATGGTCTAGAAAGCTTTTATTTTACTAGGATTTGATTCTTTTTGGCCTTT
AACAGCAGGCGTGGATCGTTTTTGTACCGCACGAATATTTCGCTTTTGAA
AACGTCGAACTTCCGGCGATTCGCATTATTCTGTTGCTCCCGCCAAGCGG
GTCTGGCCTGCTTCCTCTGCAATCCCCAATGACCGGTAAACACAGGGGAA
AGGACGTAGAACTGATAGCCAGCAATGTGCATCTCATAAACCTGGGAGTT
CCTGGTGAACCCATAACCCAGAAATCGTTCGTCGTGCGCTGGTGCGTTGT
CCACTGCTATGTAGAATGGTTCATACAGGAATTCAAAGTTCGTTACAACA
TGGCTGACGGATACTTCCGTTTCATTTGTGTTGGGGGACAGCCACTTGGA
GAAATTAGTGGCATATTGGTTATAGATGAAGACCTTTTCGTGAAAAGGCC
TAGCTAGTCCTTTCCTTATCAGGCGCACTAACGCATTCTTGGAGCGGGGA
AACGTAGCCCTAACGTCTATTTCAAATGTGGGGATTACGTAGGCACAACT
CTTCGTGCAATTGGCTGTCCTGAAGAAGTGGTTCAGCTGGGGCACACTGT
TGGTGCTGGGAACAATGTCGATGTCGGTGAGAAAGACGTACTTCGTCTGG
CACCCCTTGCGTGCCAGGTTCCTCATGTGGTTCTGCGGATAGGTGTTCCT
CTGTCGCCACTGCAGGGTCTTCAGGGAGCGGAACTTGAGCAGGGCCTTGA
GCGTCCTATCCGGGTACTGGCAGTCGAATTTGCCCCTCATGTTAAGGGGA
AGTGCGGCTACTCGGGGCAGCTTGTCGAAGTCCCTCGGTGTGAGCAAGTG
AAAGGTGGCATTCTCGCGTATGTTTGCGAGGCACAGGCGCATATAGGTAA
CGAAGTATTGCAGGACTACAAACTCCTCGGGCCCAGCTGCAAAC
BS09413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-PA | 1170 | CG3253-RA | 243..1170 | 944..17 | 4615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-RB | 1788 | CG3253-RB | 844..1772 | 944..16 | 4630 | 99.9 | Minus |
CG3253-RA | 1533 | CG3253-RA | 589..1517 | 944..16 | 4630 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24115298..24115848 | 944..394 | 2740 | 99.8 | Minus |
2R | 25286936 | 2R | 24116115..24116343 | 244..16 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 24115908..24116063 | 395..240 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:32:53 has no hits.
BS09413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:45 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-PA | 243..1170 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:18 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-PA | 243..1170 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:16 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 589..1517 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:44 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 589..1517 | 16..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:44 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24115298..24115846 | 396..944 | 99 | -> | Minus |
2R | 24115908..24116061 | 242..395 | 100 | -> | Minus |
2R | 24116118..24116343 | 16..241 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:16 Download gff for
BS09413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20002821..20003369 | 396..944 | 99 | -> | Minus |
arm_2R | 20003431..20003584 | 242..395 | 100 | -> | Minus |
arm_2R | 20003641..20003866 | 16..241 | 100 | | Minus |
BS09413.5prime Sequence
901 bp (846 high quality bases) assembled on 2006-04-19
> BS09413.5prime
GAAGTTATCAGTCGACATGGACGGCTTCGTGGTCCCGAACAACTCCGCGT
CTCTGGCCTTCGATAACATCAACTTGAGCTACGGCCGCTGGGACAACCAG
CTGCTGTACAGGATCAAAGACTTTGCTCTGCTAGGCGAGCAGTACGTAGA
CTCCTCGGAGGGCAGCTTGGTGTGCCTGGCCACCCAGACTTCAGTGGAGC
GCCTCAACTCGCTTCCCCAGGTGGCAGCCAATTGGCAGGGCAAGATGTCC
GTGGCCCTGTTTGCAGCTGGGCCCGAGGAGTTTGTAGTCCTGCAATACTT
CGTTACCTATATGCGCCTGTGCTTCGCAAACATACGCGAGAATGCCACCT
TTCACTTGCTCACACCGAGGGACTTCGACAAGCTGCCCCGAGTAGCCGCA
CTTCCCCTTAACATGAGGGGCAAATTCGACTGCCAGTACCCGGATAGGAC
GCTCAAGGCCCTGCTCAAGTTCCGCTCCCTGAAGACCCTGCAGTGGCGAC
AGAGGAACACCTATCCGCAGAACCACATGAGGAACCTGGCACGCAAGGGG
TGCCAGACGAAGTACGTCTTTCTCACCGACATCGACATTGTTCCCAGCAC
CAACAGTGTGCCCCAGCTGAACCACTTCTTCAGGACAGCCAATTGCACGA
AGAGTTGTGCCTACGTAATCCCCACATTTGAAATAGACGTTAGGGCTACG
TTTCCCCGCTCCAAGAATGCGTTAGTGCGCCTGATAAGGAAAGGACTAGC
TAGGCCTTTTCACGAANAGGTCTTCATCTATAACCAATATGCCACTAATT
TCTCCAAGTGGCTGTCCCCCAACACAAATGAAACGGAAGTATCCGTCAGC
CATGTTGTAACGAACTTTGAATTCCTGTATGAACCATTCTACATAGCAGT
G
BS09413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-PA | 1170 | CG3253-RA | 1..885 | 17..901 | 4406 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-RB | 1788 | CG3253-RB | 600..1486 | 15..901 | 4424 | 99.9 | Plus |
CG3253-RA | 1533 | CG3253-RA | 345..1231 | 15..901 | 4424 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24115054..24115848 | 15..809 | 3964 | 99.9 | Plus |
2R | 25286936 | 2R | 24115908..24116001 | 808..901 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:53:01 has no hits.
BS09413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:46 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:19 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:46 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 345..1231 | 15..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:33 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 345..1231 | 15..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:33 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24115054..24115846 | 15..807 | 99 | -> | Plus |
2R | 24115908..24116001 | 808..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:46 Download gff for
BS09413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20002577..20003369 | 15..807 | 99 | -> | Plus |
arm_2R | 20003431..20003524 | 808..901 | 100 | | Plus |
BS09413.complete Sequence
1202 bp (1202 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636412
> BS09413.complete
GAAGTTATCAGTCGACATGGACGGCTTCGTGGTCCCGAACAACTCCGCGT
CTCTGGCCTTCGATAACATCAACTTGAGCTACGGCCGCTGGGACAACCAG
CTGCTGTACAGGATCAAAGACTTTGCTCTGCTAGGCGAGCAGTACGTAGA
CTCCTCGGAGGGCAGCTTGGTGTGCCTGGCCACCCAGACTTCAGTGGAGC
GCCTCAACTCGCTTCCCCAGGTGGCAGCCAATTGGCAGGGCAAGATGTCC
GTGGCCCTGTTTGCAGCTGGGCCCGAGGAGTTTGTAGTCCTGCAATACTT
CGTTACCTATATGCGCCTGTGCTTCGCAAACATACGCGAGAATGCCACCT
TTCACTTGCTCACACCGAGGGACTTCGACAAGCTGCCCCGAGTAGCCGCA
CTTCCCCTTAACATGAGGGGCAAATTCGACTGCCAGTACCCGGATAGGAC
GCTCAAGGCCCTGCTCAAGTTCCGCTCCCTGAAGACCCTGCAGTGGCGAC
AGAGGAACACCTATCCGCAGAACCACATGAGGAACCTGGCACGCAAGGGG
TGCCAGACGAAGTACGTCTTTCTCACCGACATCGACATTGTTCCCAGCAC
CAACAGTGTGCCCCAGCTGAACCACTTCTTCAGGACAGCCAATTGCACGA
AGAGTTGTGCCTACGTAATCCCCACATTTGAAATAGACGTTAGGGCTACG
TTTCCCCGCTCCAAGAATGCGTTAGTGCGCCTGATAAGGAAAGGACTAGC
TAGGCCTTTTCACGAAAAGGTCTTCATCTATAACCAATATGCCACTAATT
TCTCCAAGTGGCTGTCCCCCAACACAAATGAAACGGAAGTATCCGTCAGC
CATGTTGTAACGAACTTTGAATTCCTGTATGAACCATTCTACATAGCAGT
GGACAACGCACCAGCGCACGACGAACGATTTCTGGGTTATGGGTTCACCA
GGAACTCCCAGGTTTATGAGATGCACATTGCTGGCTATCAGTTCTACGTC
CTTTCCCCTGTGTTTACCGGTCATTGGGGATTGCAGAGGAAGCAGGCCAG
ACCCGCTTGGCGGGAGCAACAGAATAATGCGAATCGCCGGAAGTTCGACG
TTTTCAAAAGCGAAATATTCGTGCGGTACAAAAACGATCCACGCCTGCTG
TTAAAGGCCAAAAAGAATCAAATCCTAGTAAAATAAAAGCTTTCTAGACC
AT
BS09413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-RB | 1170 | CG3253-PB | 1..1170 | 17..1186 | 5850 | 100 | Plus |
CG3253-RA | 1170 | CG3253-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-RB | 1788 | CG3253-RB | 600..1772 | 15..1187 | 5865 | 100 | Plus |
CG3253-RA | 1533 | CG3253-RA | 345..1517 | 15..1187 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24115054..24115848 | 15..809 | 3975 | 100 | Plus |
2R | 25286936 | 2R | 24116115..24116343 | 959..1187 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 24115908..24116063 | 808..963 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:13 has no hits.
BS09413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:18 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 1..1170 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:38 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 331..1503 | 15..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:32 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 347..1514 | 17..1184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:19 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 331..1503 | 15..1187 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:24 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3253-RA | 347..1514 | 17..1184 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:24 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24115056..24115846 | 17..807 | 100 | -> | Plus |
2R | 24115908..24116061 | 808..961 | 100 | -> | Plus |
2R | 24116118..24116340 | 962..1184 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:32 Download gff for
BS09413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20002579..20003369 | 17..807 | 100 | -> | Plus |
arm_2R | 20003431..20003584 | 808..961 | 100 | -> | Plus |
arm_2R | 20003641..20003863 | 962..1184 | 100 | | Plus |
BS09413.pep Sequence
Translation from 16 to 1185
> BS09413.pep
MDGFVVPNNSASLAFDNINLSYGRWDNQLLYRIKDFALLGEQYVDSSEGS
LVCLATQTSVERLNSLPQVAANWQGKMSVALFAAGPEEFVVLQYFVTYMR
LCFANIRENATFHLLTPRDFDKLPRVAALPLNMRGKFDCQYPDRTLKALL
KFRSLKTLQWRQRNTYPQNHMRNLARKGCQTKYVFLTDIDIVPSTNSVPQ
LNHFFRTANCTKSCAYVIPTFEIDVRATFPRSKNALVRLIRKGLARPFHE
KVFIYNQYATNFSKWLSPNTNETEVSVSHVVTNFEFLYEPFYIAVDNAPA
HDERFLGYGFTRNSQVYEMHIAGYQFYVLSPVFTGHWGLQRKQARPAWRE
QQNNANRRKFDVFKSEIFVRYKNDPRLLLKAKKNQILVK*
BS09413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3253-PB | 389 | CG3253-PB | 1..389 | 1..389 | 2061 | 100 | Plus |
CG3253-PA | 389 | CG3253-PA | 1..389 | 1..389 | 2061 | 100 | Plus |
CG15483-PA | 407 | CG15483-PA | 50..363 | 34..336 | 254 | 25.9 | Plus |
CG11149-PE | 475 | CG11149-PE | 143..430 | 64..336 | 207 | 27.1 | Plus |
CG11149-PD | 475 | CG11149-PD | 143..430 | 64..336 | 207 | 27.1 | Plus |