Clone BS09413 Report

Search the DGRC for BS09413

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG3253-RA
Protein status:BS09413.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09413.3prime Sequence

944 bp (850 high quality bases) assembled on 2006-04-19

> BS09413.3prime
ATGGTCTAGAAAGCTTTTATTTTACTAGGATTTGATTCTTTTTGGCCTTT
AACAGCAGGCGTGGATCGTTTTTGTACCGCACGAATATTTCGCTTTTGAA
AACGTCGAACTTCCGGCGATTCGCATTATTCTGTTGCTCCCGCCAAGCGG
GTCTGGCCTGCTTCCTCTGCAATCCCCAATGACCGGTAAACACAGGGGAA
AGGACGTAGAACTGATAGCCAGCAATGTGCATCTCATAAACCTGGGAGTT
CCTGGTGAACCCATAACCCAGAAATCGTTCGTCGTGCGCTGGTGCGTTGT
CCACTGCTATGTAGAATGGTTCATACAGGAATTCAAAGTTCGTTACAACA
TGGCTGACGGATACTTCCGTTTCATTTGTGTTGGGGGACAGCCACTTGGA
GAAATTAGTGGCATATTGGTTATAGATGAAGACCTTTTCGTGAAAAGGCC
TAGCTAGTCCTTTCCTTATCAGGCGCACTAACGCATTCTTGGAGCGGGGA
AACGTAGCCCTAACGTCTATTTCAAATGTGGGGATTACGTAGGCACAACT
CTTCGTGCAATTGGCTGTCCTGAAGAAGTGGTTCAGCTGGGGCACACTGT
TGGTGCTGGGAACAATGTCGATGTCGGTGAGAAAGACGTACTTCGTCTGG
CACCCCTTGCGTGCCAGGTTCCTCATGTGGTTCTGCGGATAGGTGTTCCT
CTGTCGCCACTGCAGGGTCTTCAGGGAGCGGAACTTGAGCAGGGCCTTGA
GCGTCCTATCCGGGTACTGGCAGTCGAATTTGCCCCTCATGTTAAGGGGA
AGTGCGGCTACTCGGGGCAGCTTGTCGAAGTCCCTCGGTGTGAGCAAGTG
AAAGGTGGCATTCTCGCGTATGTTTGCGAGGCACAGGCGCATATAGGTAA
CGAAGTATTGCAGGACTACAAACTCCTCGGGCCCAGCTGCAAAC

BS09413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-PA 1170 CG3253-RA 243..1170 944..17 4615 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-RB 1788 CG3253-RB 844..1772 944..16 4630 99.9 Minus
CG3253-RA 1533 CG3253-RA 589..1517 944..16 4630 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24115298..24115848 944..394 2740 99.8 Minus
2R 25286936 2R 24116115..24116343 244..16 1145 100 Minus
2R 25286936 2R 24115908..24116063 395..240 780 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:32:53 has no hits.

BS09413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:45 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-PA 243..1170 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:18 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-PA 243..1170 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:01:16 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 589..1517 16..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:44 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 589..1517 16..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:44 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24115298..24115846 396..944 99 -> Minus
2R 24115908..24116061 242..395 100 -> Minus
2R 24116118..24116343 16..241 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:01:16 Download gff for BS09413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20002821..20003369 396..944 99 -> Minus
arm_2R 20003431..20003584 242..395 100 -> Minus
arm_2R 20003641..20003866 16..241 100   Minus

BS09413.5prime Sequence

901 bp (846 high quality bases) assembled on 2006-04-19

> BS09413.5prime
GAAGTTATCAGTCGACATGGACGGCTTCGTGGTCCCGAACAACTCCGCGT
CTCTGGCCTTCGATAACATCAACTTGAGCTACGGCCGCTGGGACAACCAG
CTGCTGTACAGGATCAAAGACTTTGCTCTGCTAGGCGAGCAGTACGTAGA
CTCCTCGGAGGGCAGCTTGGTGTGCCTGGCCACCCAGACTTCAGTGGAGC
GCCTCAACTCGCTTCCCCAGGTGGCAGCCAATTGGCAGGGCAAGATGTCC
GTGGCCCTGTTTGCAGCTGGGCCCGAGGAGTTTGTAGTCCTGCAATACTT
CGTTACCTATATGCGCCTGTGCTTCGCAAACATACGCGAGAATGCCACCT
TTCACTTGCTCACACCGAGGGACTTCGACAAGCTGCCCCGAGTAGCCGCA
CTTCCCCTTAACATGAGGGGCAAATTCGACTGCCAGTACCCGGATAGGAC
GCTCAAGGCCCTGCTCAAGTTCCGCTCCCTGAAGACCCTGCAGTGGCGAC
AGAGGAACACCTATCCGCAGAACCACATGAGGAACCTGGCACGCAAGGGG
TGCCAGACGAAGTACGTCTTTCTCACCGACATCGACATTGTTCCCAGCAC
CAACAGTGTGCCCCAGCTGAACCACTTCTTCAGGACAGCCAATTGCACGA
AGAGTTGTGCCTACGTAATCCCCACATTTGAAATAGACGTTAGGGCTACG
TTTCCCCGCTCCAAGAATGCGTTAGTGCGCCTGATAAGGAAAGGACTAGC
TAGGCCTTTTCACGAANAGGTCTTCATCTATAACCAATATGCCACTAATT
TCTCCAAGTGGCTGTCCCCCAACACAAATGAAACGGAAGTATCCGTCAGC
CATGTTGTAACGAACTTTGAATTCCTGTATGAACCATTCTACATAGCAGT
G

BS09413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-PA 1170 CG3253-RA 1..885 17..901 4406 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-RB 1788 CG3253-RB 600..1486 15..901 4424 99.9 Plus
CG3253-RA 1533 CG3253-RA 345..1231 15..901 4424 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24115054..24115848 15..809 3964 99.9 Plus
2R 25286936 2R 24115908..24116001 808..901 470 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:53:01 has no hits.

BS09413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:46 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:19 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:21:46 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 345..1231 15..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:33 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 345..1231 15..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:33 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24115054..24115846 15..807 99 -> Plus
2R 24115908..24116001 808..901 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:21:46 Download gff for BS09413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20002577..20003369 15..807 99 -> Plus
arm_2R 20003431..20003524 808..901 100   Plus

BS09413.complete Sequence

1202 bp (1202 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636412

> BS09413.complete
GAAGTTATCAGTCGACATGGACGGCTTCGTGGTCCCGAACAACTCCGCGT
CTCTGGCCTTCGATAACATCAACTTGAGCTACGGCCGCTGGGACAACCAG
CTGCTGTACAGGATCAAAGACTTTGCTCTGCTAGGCGAGCAGTACGTAGA
CTCCTCGGAGGGCAGCTTGGTGTGCCTGGCCACCCAGACTTCAGTGGAGC
GCCTCAACTCGCTTCCCCAGGTGGCAGCCAATTGGCAGGGCAAGATGTCC
GTGGCCCTGTTTGCAGCTGGGCCCGAGGAGTTTGTAGTCCTGCAATACTT
CGTTACCTATATGCGCCTGTGCTTCGCAAACATACGCGAGAATGCCACCT
TTCACTTGCTCACACCGAGGGACTTCGACAAGCTGCCCCGAGTAGCCGCA
CTTCCCCTTAACATGAGGGGCAAATTCGACTGCCAGTACCCGGATAGGAC
GCTCAAGGCCCTGCTCAAGTTCCGCTCCCTGAAGACCCTGCAGTGGCGAC
AGAGGAACACCTATCCGCAGAACCACATGAGGAACCTGGCACGCAAGGGG
TGCCAGACGAAGTACGTCTTTCTCACCGACATCGACATTGTTCCCAGCAC
CAACAGTGTGCCCCAGCTGAACCACTTCTTCAGGACAGCCAATTGCACGA
AGAGTTGTGCCTACGTAATCCCCACATTTGAAATAGACGTTAGGGCTACG
TTTCCCCGCTCCAAGAATGCGTTAGTGCGCCTGATAAGGAAAGGACTAGC
TAGGCCTTTTCACGAAAAGGTCTTCATCTATAACCAATATGCCACTAATT
TCTCCAAGTGGCTGTCCCCCAACACAAATGAAACGGAAGTATCCGTCAGC
CATGTTGTAACGAACTTTGAATTCCTGTATGAACCATTCTACATAGCAGT
GGACAACGCACCAGCGCACGACGAACGATTTCTGGGTTATGGGTTCACCA
GGAACTCCCAGGTTTATGAGATGCACATTGCTGGCTATCAGTTCTACGTC
CTTTCCCCTGTGTTTACCGGTCATTGGGGATTGCAGAGGAAGCAGGCCAG
ACCCGCTTGGCGGGAGCAACAGAATAATGCGAATCGCCGGAAGTTCGACG
TTTTCAAAAGCGAAATATTCGTGCGGTACAAAAACGATCCACGCCTGCTG
TTAAAGGCCAAAAAGAATCAAATCCTAGTAAAATAAAAGCTTTCTAGACC
AT

BS09413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-RB 1170 CG3253-PB 1..1170 17..1186 5850 100 Plus
CG3253-RA 1170 CG3253-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-RB 1788 CG3253-RB 600..1772 15..1187 5865 100 Plus
CG3253-RA 1533 CG3253-RA 345..1517 15..1187 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24115054..24115848 15..809 3975 100 Plus
2R 25286936 2R 24116115..24116343 959..1187 1145 100 Plus
2R 25286936 2R 24115908..24116063 808..963 780 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:13 has no hits.

BS09413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:18 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 1..1170 17..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:38 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 331..1503 15..1187 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:32 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 347..1514 17..1184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:19 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 331..1503 15..1187 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:24 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
CG3253-RA 347..1514 17..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:24 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24115056..24115846 17..807 100 -> Plus
2R 24115908..24116061 808..961 100 -> Plus
2R 24116118..24116340 962..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:32 Download gff for BS09413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20002579..20003369 17..807 100 -> Plus
arm_2R 20003431..20003584 808..961 100 -> Plus
arm_2R 20003641..20003863 962..1184 100   Plus

BS09413.pep Sequence

Translation from 16 to 1185

> BS09413.pep
MDGFVVPNNSASLAFDNINLSYGRWDNQLLYRIKDFALLGEQYVDSSEGS
LVCLATQTSVERLNSLPQVAANWQGKMSVALFAAGPEEFVVLQYFVTYMR
LCFANIRENATFHLLTPRDFDKLPRVAALPLNMRGKFDCQYPDRTLKALL
KFRSLKTLQWRQRNTYPQNHMRNLARKGCQTKYVFLTDIDIVPSTNSVPQ
LNHFFRTANCTKSCAYVIPTFEIDVRATFPRSKNALVRLIRKGLARPFHE
KVFIYNQYATNFSKWLSPNTNETEVSVSHVVTNFEFLYEPFYIAVDNAPA
HDERFLGYGFTRNSQVYEMHIAGYQFYVLSPVFTGHWGLQRKQARPAWRE
QQNNANRRKFDVFKSEIFVRYKNDPRLLLKAKKNQILVK*

BS09413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3253-PB 389 CG3253-PB 1..389 1..389 2061 100 Plus
CG3253-PA 389 CG3253-PA 1..389 1..389 2061 100 Plus
CG15483-PA 407 CG15483-PA 50..363 34..336 254 25.9 Plus
CG11149-PE 475 CG11149-PE 143..430 64..336 207 27.1 Plus
CG11149-PD 475 CG11149-PD 143..430 64..336 207 27.1 Plus