Clone Sequence Records
BS09415.3prime Sequence
897 bp (691 high quality bases) assembled on 2006-04-19
> BS09415.3prime
ATGGTCTAGAAAGCTTCTAATCAGCGGTGCTTTCGATGACGGAGACTATG
TCCTCGGCAGCATCACAGAGCAGACTGTAGGTGTGCATATAGAGAGAGTC
CTTGAGGTACTTGCTTGCCTTGACTCTCTTCGAGACTTTCTCCACGATCT
GAATTTCTTCGTTTTCATCTGGACCCTGCTGGCGATTCTTCTGGCCTAGC
TCTGAGGCGACGGGAAGAGAAGAATTCTCCCCTAGATAGTGGAGGAGCTC
CAGCTTAAAGAACTGTTCATCCAGCCCAAAAACCATTGCCTCCCACTCGT
CGATTTTGCTGGCGATAGTGCCACGCACGTAAATGAAGCGGGATCTATCC
CGCTCCGTATTGTGTTCCATTAAGGGATAAGCTGAGCACCTGTTGCACTT
CATCGGCTGGAGCAAAGCAACCAGTTTGTTGTGGAGATTCTCGCGCAGGA
AGCGACTCTCCTGCTTGCCAATAAAGTGACGCAGGGTCTCGATACTTAAA
TCCCAGGGTCTATCGCGAGGCTTCTTGGCCAGTTGATATAAGTCCTTGAG
AGCCTCCAGATCCTCGTATCGCTGGCATCGGTAAGAGAAGTTCTGGGCAT
TAAAGACCTCGCGCTCGTCAAGATGTCTTTGGTAGGGACACAATGGTCGA
GGGTTCTCGATAATGGGAGCCAGACTGGCCTGCATTTGCAGAAGGCCCTG
GGCCTGCAATTGTTGCTGCTTATCTAGGGGCACCTGTCGGTGACCCTCGA
GGCGTCTCTGGAACGGAACGGGCATGGTGCACTGACCCTGGAGAACGACG
TCCAGGCGGCGGGTGCCACAGAAGGGCGATTTTTGGAAGTTCACGTGCCA
TCGCTGCGTGAAAAGGCCCACCTTTTTCGGCTGGACATCACACGAAT
BS09415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-PA | 2121 | CG11060-RA | 1253..2121 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-RA | 2312 | CG11060-RA | 1350..2231 | 897..17 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7177328..7178209 | 897..17 | 4360 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 10:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader4 | 3105 | invader4 INVADER4 3105bp | 676..704 | 247..275 | 109 | 86.2 | Plus |
BS09415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:49 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-PA | 1240..2121 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:23 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-PA | 1240..2121 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:23:20 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 1350..2235 | 11..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:24 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 1350..2235 | 11..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:24 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7177328..7178211 | 14..897 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:23:20 Download gff for
BS09415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3064833..3065716 | 14..897 | 99 | -> | Minus |
BS09415.5prime Sequence
920 bp (809 high quality bases) assembled on 2006-04-19
> BS09415.5prime
GAAGTTATCAGTCGACATGAGGCCCACGCAGCACTCCGTCATAAACTCCT
TGGGGAAAAAGATTTCGAATCAAACTATCAACGATTCGCACTCCAACAAA
CATAACTTCATGGATATGGAACAAGAGGAAAAGCAGCCTGAGCATATGTA
CATGGCCACCCAGACCGTGGAGGACATTCTTAATGAGGTCCTGTGCATGC
AGAATTTCCAGCAAAAGCAGTCGGACAGCAACCTAGATCAGTTCTGCCAC
TCGGAGAGGTCCAGGGATCGGAAGCCGGGCGACGATTTGGACATGGACCC
GCGACTGCGCAGCTGGAACCGCGTGCTGCAGGAGCGTAGGCGACTGCAGG
ATAGGATCGCTCGGCAGACGGGTAAGCGGGCCGAGGACGTGCTCTTCAAT
CGCTCGGCGACCATCGACGAGGCCAACAAGCGGATGATTCTGCGCGTCCT
TGACACCGCAGACAGGTCACGACCTCTTGCTCGCCTCAAGGACAATGTGA
CCTTGAACTCCCTGAAGCCGCGCTGTGATCCCCATCTCTGCCGCGAGATT
AAGGAGCTGTACGCCGCGAAGCCGCAGTTGCAGGAGGTGGAGTTCGTCGG
CCTGCCGCAGGTCACCCAAAAGGAGCTGGCTGCCACCCGCCTTCATTCCA
ACGAGATCGAGAGCCAGTGGCAGCGCTCCCAGGTCTTGAGCGAACGACTT
GAGGACAAGAAGCACTCTATTCGACAGGTGCTTGACTTTGCGCCCGATCT
AAATGGGCTGCAGGTCACGCCGGCCTTTGTGGGCTCGTCCACTAAGAATC
TGCCGATCATCAAAATCGACGAAACTTCCTTGTCTAATATCTCCGGGAAC
TCCACTCCGGAAGAGGAGGAGGATTCGGAGTCCGATCTGCTGTCATAGNA
GGGGGAGGTAAGCGATAGCT
BS09415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-PA | 2121 | CG11060-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-RA | 2312 | CG11060-RA | 111..1014 | 17..920 | 4475 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7175996..7176899 | 17..920 | 4449 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:36:03 has no hits.
BS09415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:50 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:24 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:29:32 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..1014 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:22 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..1014 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:22 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7175996..7176899 | 17..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:29:32 Download gff for
BS09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3063501..3064404 | 17..920 | 99 | | Plus |
BS09415.complete Sequence
2153 bp assembled on 2008-01-16
GenBank Submission: FJ636413
> BS09415.complete
GAAGTTATCAGTCGACATGAGGCCCACGCAGCACTCCGTCATAAACTCCT
TGGGGAAAAAGATTTCGAATCAAACTATCAACGATTCGCACTCCAACAAA
CATAACTTCATGGATATGGAACAAGAGGAAAAGCAGCCTGAGCATATGTA
CATGGCCACCCAGACCGTGGAGGACATTCTTAATGAGGTCCTGTGCATGC
AGAATTTCCAGCAAAAGCAGTCGGACAGCAACCTAGATCAGTTCTGCCAC
TCGGAGAGGTCCAGGGATCGGAAGCCGGGCGACGATTTGGACATGGACCC
GCGACTGCGCAGCTGGAACCGCGTGCTGCAGGAGCGTAGGCGACTGCAGG
ATAGGATCGCTCGGCAGACGGGTAAGCGGGCCGAGGACGTGCTCTTCAAT
CGCTCGGCGACCATCGACGAGGCCAACAAGCGGATGATTCTGCGCGTCCT
TGACACCGCAGACAGGTCACGACCTCTTGCTCGCCTCAAGGACAATGTGA
CCTTGAACTCCCTGAAGCCGCGCTGTGATCCCCATCTCTGCCGCGAGATT
AAGGAGCTGTACGCCGCGAAGCCGCAGTTGCAGGAGGTGGAGTTCGTCGG
CCTGCCGCAGGTCACCCAAAAGGAGCTGGCTGCCACCCGCCTTCATTCCA
ACGAGATCGAGAGCCAGTGGCAGCGCTCCCAGGTCTTGAGCGAACGACTT
GAGGACAAGAAGCACTCTATTCGACAGGTGCTTGACTTTGCGCCCGATCT
AAATGGGCTGCAGGTCACGCCGGCCTTTGTGGGCTCGTCCACTAAGAATC
TGCCGATCATCAAAATCGACGAAACTTCCTTGTCTAATATCTCCGGGAAC
TCCACTCCGGAAGAGGAGGAGGATTCGGAGTCCGATCTGCTGTCCATAGA
GGGGGAGGTAAGCGATAGCTTTCAAGAGGCGGCACTCGAGGATATTACAA
AGGGAATTGTCGAGAGTCAGGACATGGATGACGTCAAGGACGTACAAGGT
CTGATGATCAACGGGGTGATCCTTGATTACCGCAATCCTGTCGGCGCCAT
AAGCAAAAGCATCAATATGCTGCTGCAATGTGAACCATATGAGCGCGTGG
TGAAGATACTTTTGGACATTCAGAATCTAAGTCCGAAGCTGGTGCACGTC
TATTGGCTTAGTAAGAACCGCTTGCGTTCCGACCGGCTGCCCTTGAACTC
CGAGATGGTCTTCGACCGCAGCGAGTTCATCCTGGAGCCACAGGGTCGCC
GCCTCATTCGTGTGATGTTCCAGCCGAAAAAGGTGGGCCTTTTCACGCAG
CGATGGCACGTGAACTTCCAAAAATCGCCCTTCTGTGGCACCCGCCGCCT
GGACGTCGTTCTCCAGGGTCAGTGCACCATGCCCGTTCCGTTCCAGAGAC
GCCTCGAGGGTCACCGACAGGTGCCCCTAGATAAGCAGCAACAATTGCAG
GCCCAGGGCCTTCTGCAAATGCAGGCCAGTCTGGCTCCCATTATCGAGAA
CCCTCGACCATTGTGTCCCTACCAAAGACATCTTGACGAGCGCGAGGTCT
TTAATGCCCAGAACTTCTCTTACCGATGCCAGCGATACGAGGATCTGGAG
GCTCTCAAGGACTTATATCAACTGGCCAAGAAGCCTCGCGATAGACCCTG
GGATTTAAGTATCGAGACCCTGCGTCACTTTATTGGCAAGCAGGAGAGTC
GCTTCCTGCGCGAGAATCTCCACAACAAACTGGTTGCTTTGCTCCAGCCG
ATGAAGTGCAACAGGTGCTCAGCTTATCCCTTAATGGAACACAATACGGA
GCGGGATAGATCCCGCTTCATTTACGTGCGTGGCACTATCGCCAGCAAAA
TCGACGAGTGGGAGGCAATGGTTTTTGGGCTGGATGAACAGTTCTTTAAG
CTGGAGCTCCTCCACTATCTAGGGGAGAATTCTTCTCTTCCCGTCGCCTC
AGAGCTAGGCCAGAAGAATCGCCAGCAGGGTCCAGATGAAAACGAAGAAA
TTCAGATCGTGGAGAAAGTCTCGAAGAGAGTCAAGGCAAGCAAGTACCTC
AAGGACTCTCTCTATATGCACACCTACAGTCTGCTCTGTGATGCTGCCGA
GGACATAGTCTCCGTCATCGAAAGCACCGCTGATTAGAAGCTTTCTAGAC
CAT
BS09415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-RA | 2121 | CG11060-PA | 1..2121 | 17..2137 | 10605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-RA | 2312 | CG11060-RA | 111..2231 | 17..2137 | 10605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7175996..7177102 | 17..1123 | 5535 | 100 | Plus |
| 2R | 25286936 | 2R | 7177193..7178209 | 1121..2137 | 5085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:20:13 has no hits.
BS09415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:07 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 1..2121 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:41 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..2231 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:38 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..2231 | 17..2137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:07 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..2235 | 17..2143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:08 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11060-RA | 111..2231 | 17..2137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:08 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7175996..7177102 | 17..1123 | 100 | -> | Plus |
| 2R | 7177196..7178209 | 1124..2137 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:38 Download gff for
BS09415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3063501..3064607 | 17..1123 | 100 | -> | Plus |
| arm_2R | 3064701..3065714 | 1124..2137 | 100 | | Plus |
BS09415.pep Sequence
Translation from 16 to 2136
> BS09415.pep
MRPTQHSVINSLGKKISNQTINDSHSNKHNFMDMEQEEKQPEHMYMATQT
VEDILNEVLCMQNFQQKQSDSNLDQFCHSERSRDRKPGDDLDMDPRLRSW
NRVLQERRRLQDRIARQTGKRAEDVLFNRSATIDEANKRMILRVLDTADR
SRPLARLKDNVTLNSLKPRCDPHLCREIKELYAAKPQLQEVEFVGLPQVT
QKELAATRLHSNEIESQWQRSQVLSERLEDKKHSIRQVLDFAPDLNGLQV
TPAFVGSSTKNLPIIKIDETSLSNISGNSTPEEEEDSESDLLSIEGEVSD
SFQEAALEDITKGIVESQDMDDVKDVQGLMINGVILDYRNPVGAISKSIN
MLLQCEPYERVVKILLDIQNLSPKLVHVYWLSKNRLRSDRLPLNSEMVFD
RSEFILEPQGRRLIRVMFQPKKVGLFTQRWHVNFQKSPFCGTRRLDVVLQ
GQCTMPVPFQRRLEGHRQVPLDKQQQLQAQGLLQMQASLAPIIENPRPLC
PYQRHLDEREVFNAQNFSYRCQRYEDLEALKDLYQLAKKPRDRPWDLSIE
TLRHFIGKQESRFLRENLHNKLVALLQPMKCNRCSAYPLMEHNTERDRSR
FIYVRGTIASKIDEWEAMVFGLDEQFFKLELLHYLGENSSLPVASELGQK
NRQQGPDENEEIQIVEKVSKRVKASKYLKDSLYMHTYSLLCDAAEDIVSV
IESTAD*
BS09415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11060-PA | 706 | CG11060-PA | 1..706 | 1..706 | 3649 | 100 | Plus |
| CG33140-PA | 720 | CG33140-PA | 59..715 | 51..704 | 781 | 31.3 | Plus |
| CG30384-PA | 708 | CG30384-PA | 66..705 | 49..704 | 762 | 29.7 | Plus |
| CG30385-PA | 536 | CG30385-PA | 194..533 | 328..704 | 358 | 28.4 | Plus |
