Clone Sequence Records
BS09416.3prime Sequence
941 bp (784 high quality bases) assembled on 2006-04-19
> BS09416.3prime
ATGGTCTAGAAAGCTTCTATTCGGCCTTCTCGCCCATCTTGGCCTGAATC
TCGTTAAGCGTTTTTCCCTTTGTCTCGGGAATTAGGAAGAGAATGAAGAC
AAAGGCGGCCACCGCAAATCCGAAGAAGATTGCAAAGCACGCGGTTGCTC
CAATAATATCGTTAAGAACAGGGAAAAGAAGGGTCACGATAAAAGCAAAA
CACCAATTTGTAGTCCCGGCAATCGATCCTGCTAGGGCCTTTACATCCTC
GGCAAAGAGCTCGGCCATCATCAGCCAGGGAACTGGACCGAATCCCAGGG
AGAATCCAATAATAAAAACACAAACGGCAATTAGGGCCAGCCAGCCGACT
CCAGATTTCATCAACATGCCAAAGTAAAGAGCCATGATCAGGGTGCTGAT
ACCCATCATGCAGGCGGACACCAATAGGAGTATCTTCCGACCGACTTTCT
CAATAACCAGGATCGAAATGATAGTGGCAATAGCCTGCACAATGCCCACA
ATAATTGTAGATATTCTGGGCTCCAGGGTCGATCCAGCCGTCTCAAAGAT
GAATGTAGAATAGAAAATAATCGCATTGATGCCCGTCATCTGCTGGAACA
ACATGAGACCGATGGAGAGGAACAGCCCCTTGAGGGTAATCCTGCGGCAT
AGGATTTTCCCAACGCTAGCCTTCTCCTTTTGGCCCTCGGCGCTCATTTC
CTTCAGCTCACCGCTCACATCCGCATCCTTTCCGCGCAGAAATTTAAGAG
ATTTCTCCGCCTTCTCGGCTTTTCCCTTTTGGGCCAGAAAAATCGGAGAT
TCCGGCATAAAAATCATCAAGACAAAAAAGATTACGGGCAAAATTGCGCA
AGCAATATTAAAGTAGAAGGTCTTTACAAAACCTCCAACACAAAGGCGTA
CAGAATACCAAAAACGATTAGCAGCTGGAAGAAGCATCCCA
BS09416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1380-PB | 1335 | sut4-RB | 463..1335 | 889..17 | 4365 | 100 | Minus |
| CG1380-PA | 1335 | sut4-RA | 463..1335 | 889..17 | 4365 | 100 | Minus |
| CG1380-PB | 1335 | sut4-RB | 410..462 | 941..889 | 265 | 100 | Minus |
| CG1380-PA | 1335 | sut4-RA | 410..462 | 941..889 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 574..1499 | 941..17 | 4605 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10085629..10086554 | 17..941 | 4580 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:20:18 has no hits.
BS09416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:51 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-PB | 411..1335 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:26 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1380-PA | 411..1335 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:30:20 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 575..1504 | 11..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:17 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 575..1504 | 11..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:17 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10085624..10086553 | 11..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:30:20 Download gff for
BS09416.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973129..5974058 | 11..940 | 99 | | Plus |
BS09416.5prime Sequence
933 bp (847 high quality bases) assembled on 2006-04-19
> BS09416.5prime
GAAGTTATCAGTCGACATGGGAACTGCCACTCAGTTTATTGTTGGTTTCA
TCGGCGCCCTGGGCGCCTTTTGTCTAGGCGCAGTGATCGGCTGGTCAGGA
CCGGTGGAAAATGAAGTCAAGAATTCTAACGCGTACAACTTTACCCCTCG
TCAAACGGAATGGGGCCTGGTGGGATCTCTGATGACTCTGGGTGCAGCTT
TCTCGTGCATTCCGGTGGGCGTGCTCATTGGTAAGATCGGGCGGAAGACG
ACAATGCTAATCCTGCTGCCACCGTTCTTTATCGGATGGCTCCTGATCCT
CCTGGCATCGCACATAGCAATGCTGCTGCTCGGACGCTTCGTAGTGGGAT
TCTGCGGAGGAGCCTTCTGCGTGACTTGTCCCATGTACGTGACTGAGATA
GCCCAGGTCCAGTACCGCGGAACCATGGGATGCTTCTTCCAGCTGCTAAT
CGTTTTTGGTATTCTGTACGCCTTTGTGGTTGGAGGTTTTGTAAAGACCT
TCTACTTTAATATTGCTTGCGCAATTTTGCCCGTAATCTTTTTTGTCTTG
ATGATTTTTATGCCGGAATCTCCGATTTTTCTGGCCCAAAAGGGAAAAGC
CGAGAAGGCGGAGAAATCTCTTAAATTTCTGCGCGGAAAGGATGCGGATG
TGAGCGGTGAGCTGAAGGAAATGAGCGCCGAGGGCCAAAAGGAGAAGGCT
AGCGTTGGGAAAATCCTATGCCGCAGGATTACCCTCAAGGGGCTGTTCCT
CTCCATCGGTCTCATGTTGTTCCAGCAGATGACGGGCATCAATGCGATTA
TTTTCTATTCTACATTCATCTTTGAGACGGCTGGATCGACCCTGGAGCCC
AGAATATCTACAATTATTGTGGGCATTGTGCANGCTATTGCCACTATCAT
TTCGATCCTGGTTATTGAGAAAGTCGGTCGGAA
BS09416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1380-PB | 1335 | sut4-RB | 1..917 | 17..933 | 4566 | 99.8 | Plus |
| CG1380-PA | 1335 | sut4-RA | 1..917 | 17..933 | 4566 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 165..1081 | 17..933 | 4574 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10086047..10086963 | 933..17 | 4574 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:28:16 has no hits.
BS09416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:52 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-PB | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:27 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1380-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:03 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 159..1081 | 11..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:03 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 159..1081 | 11..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:03 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10086047..10086969 | 11..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:03 Download gff for
BS09416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973552..5974474 | 11..933 | 99 | | Minus |
BS09416.complete Sequence
1367 bp (1367 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636414
> BS09416.complete
GAAGTTATCAGTCGACATGGGAACTGCCACTCAGTTTATTGTTGGTTTCA
TCGGCGCCCTGGGCGCCTTTTGTCTAGGCGCAGTGATCGGCTGGTCAGGA
CCGGTGGAAAATGAAGTCAAGAATTCTAACGCGTACAACTTTACCCCTCG
TCAAACGGAATGGGGCCTGGTGGGATCTCTGATGACTCTGGGTGCAGCTT
TCTCGTGCATTCCGGTGGGCGTGCTCATTGGTAAGATCGGGCGGAAGACG
ACAATGCTAATCCTGCTGCCACCGTTCTTTATCGGATGGCTCCTGATCCT
CCTGGCATCGCACATAGCAATGCTGCTGCTCGGACGCTTCGTAGTGGGAT
TCTGCGGAGGAGCCTTCTGCGTGACTTGTCCCATGTACGTGACTGAGATA
GCCCAGGTCCAGTACCGCGGAACCATGGGATGCTTCTTCCAGCTGCTAAT
CGTTTTTGGTATTCTGTACGCCTTTGTGGTTGGAGGTTTTGTAAAGACCT
TCTACTTTAATATTGCTTGCGCAATTTTGCCCGTAATCTTTTTTGTCTTG
ATGATTTTTATGCCGGAATCTCCGATTTTTCTGGCCCAAAAGGGAAAAGC
CGAGAAGGCGGAGAAATCTCTTAAATTTCTGCGCGGAAAGGATGCGGATG
TGAGCGGTGAGCTGAAGGAAATGAGCGCCGAGGGCCAAAAGGAGAAGGCT
AGCGTTGGGAAAATCCTATGCCGCAGGATTACCCTCAAGGGGCTGTTCCT
CTCCATCGGTCTCATGTTGTTCCAGCAGATGACGGGCATCAATGCGATTA
TTTTCTATTCTACATTCATCTTTGAGACGGCTGGATCGACCCTGGAGCCC
AGAATATCTACAATTATTGTGGGCATTGTGCAGGCTATTGCCACTATCAT
TTCGATCCTGGTTATTGAGAAAGTCGGTCGGAAGATACTCCTATTGGTGT
CCGCCTGCATGATGGGTATCAGCACCCTGATCATGGCTCTTTACTTTGGC
ATGTTGATGAAATCTGGAGTCGGCTGGCTGGCCCTAATTGCCGTTTGTGT
TTTTATTATTGGATTCTCCCTGGGATTCGGTCCAGTTCCCTGGCTGATGA
TGGCCGAGCTCTTTGCCGAGGATGTAAAGGCCCTAGCAGGATCGATTGCC
GGGACTACAAATTGGTGTTTTGCTTTTATCGTGACCCTTCTTTTCCCTGT
TCTTAACGATATTATTGGAGCAACCGCGTGCTTTGCAATCTTCTTCGGAT
TTGCGGTGGCCGCCTTTGTCTTCATTCTCTTCCTAATTCCCGAGACAAAG
GGAAAAACGCTTAACGAGATTCAGGCCAAGATGGGCGAGAAGGCCGAATA
GAAGCTTTCTAGACCAT
BS09416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1335 | CG1380-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-RA | 1686 | CG1380-RA | 165..1499 | 17..1351 | 6675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10085629..10086963 | 1351..17 | 6675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:11 has no hits.
BS09416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:20 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 1..1335 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:40 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 96..1441 | 11..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:04 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 165..1499 | 17..1351 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:20 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 96..1441 | 11..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:23 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sut4-RA | 165..1499 | 17..1351 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:23 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10085629..10086963 | 17..1351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:04 Download gff for
BS09416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5973134..5974468 | 17..1351 | 100 | | Minus |
BS09416.pep Sequence
Translation from 16 to 1350
> BS09416.pep
MGTATQFIVGFIGALGAFCLGAVIGWSGPVENEVKNSNAYNFTPRQTEWG
LVGSLMTLGAAFSCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHI
AMLLLGRFVVGFCGGAFCVTCPMYVTEIAQVQYRGTMGCFFQLLIVFGIL
YAFVVGGFVKTFYFNIACAILPVIFFVLMIFMPESPIFLAQKGKAEKAEK
SLKFLRGKDADVSGELKEMSAEGQKEKASVGKILCRRITLKGLFLSIGLM
LFQQMTGINAIIFYSTFIFETAGSTLEPRISTIIVGIVQAIATIISILVI
EKVGRKILLLVSACMMGISTLIMALYFGMLMKSGVGWLALIAVCVFIIGF
SLGFGPVPWLMMAELFAEDVKALAGSIAGTTNWCFAFIVTLLFPVLNDII
GATACFAIFFGFAVAAFVFILFLIPETKGKTLNEIQAKMGEKAE*
BS09416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sut4-PA | 444 | CG1380-PA | 1..444 | 1..444 | 2256 | 100 | Plus |
| CG6484-PA | 465 | CG6484-PA | 9..448 | 6..436 | 1210 | 51.8 | Plus |
| CG10960-PA | 471 | CG10960-PA | 15..457 | 6..439 | 1098 | 48.3 | Plus |
| CG10960-PC | 471 | CG10960-PC | 15..457 | 6..439 | 1098 | 48.3 | Plus |
| CG10960-PB | 539 | CG10960-PB | 83..525 | 6..439 | 1098 | 48.3 | Plus |
