Clone Sequence Records
BS09418.3prime Sequence
914 bp (814 high quality bases) assembled on 2006-04-19
> BS09418.3prime
ATGGTCTAGAAAGCTTTTAATTTCCATTTCCCGCCCCATCTTTGGCCGCT
GCATATTGCAATCCCTTCAGCAGTGGCGAGTCCTCCACATCATTATTCTT
CACAGGCTCCAACGAGCTATTCGTCTCGATGGAACTAATCTCGATCTTGT
GCATCAGGCTCTTCTGCCAGATCATTTGATGGGGATACCAGAATACCATC
AGCAAACCCAAGACCACGCCCAGGATGCCACAGATCTTGCCCACAAACTC
AAGGATCGGCATTAGCTTCACGTAGACCAGAAGATCATCCGTGATGCGGA
CATTGTAATCCGCCCAGATCAACGGAAAGAATGTTCTTCTCGCCGTCCGG
TAAATTAAATGAGTTTTGGGCTCCACCAGCAAGTTGGCCATAATGCGCGC
CTTGATCTCCAGCACCATTCCCGTTTTGGGCTCCAACATAATGACCATCT
CGTGGCGATCCTTGTCGGGCTTCATGCCCTCCACCTGCTCTCCGTAGTAG
GGATCAGCTTTGAAGAAGTGCGGATACGAAGCAAAGACAGGCGTTCCATA
CCAACAGGAGGATATGTTGAGAAGACCGGATCTCACCTCCTGGCAGTTAT
CCTGGCAATAGCAACTGTTATCCGGGTTATCAGTACCATTTGCCATATTG
CGTGCACTGCCTCTGTAAACGAAAGCATCGATGCCCTCGAAGATTGTGGT
GCCGGAGTAGTCCACCTGCAGCTCACGGCACAGATCCGGCAGGAAGTAGG
AGATGGGTCTGCCCTTTACCAGCGGTATTGGATGGAATTCTCCGGCGCTG
CCCTTCAACTTGCACCTGGGACTGGCCTCAGTGACATTGTTGTAGCGCCA
CCTGGCTATTTGACCCAGTTTTTGGAACTCATCCCGTCCCGTGTACACAT
TGTGATGCCCGTAG
BS09418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PA | 1557 | CG7227-RA | 660..1557 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 1062..1959 | 914..17 | 4490 | 100 | Minus |
| CG7227-RB | 2128 | CG7227-RB | 1062..1959 | 914..17 | 4490 | 100 | Minus |
| CG7227-RA | 2270 | CG7227-RA | 1204..2101 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7995007..7995346 | 17..356 | 1700 | 100 | Plus |
| 2L | 23513712 | 2L | 7995412..7995692 | 357..637 | 1405 | 100 | Plus |
| 2L | 23513712 | 2L | 7995753..7996033 | 634..914 | 1405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:19:25 has no hits.
BS09418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:56 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 660..1557 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:31 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 660..1557 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:30:14 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1204..2107 | 10..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:52:10 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1204..2107 | 10..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:52:10 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995001..7995346 | 10..356 | 99 | <- | Plus |
| 2L | 7995412..7995691 | 357..636 | 100 | <- | Plus |
| 2L | 7995756..7996033 | 637..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:30:14 Download gff for
BS09418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995001..7995346 | 10..356 | 99 | <- | Plus |
| arm_2L | 7995412..7995691 | 357..636 | 100 | <- | Plus |
| arm_2L | 7995756..7996033 | 637..914 | 100 | | Plus |
BS09418.5prime Sequence
796 bp (766 high quality bases) assembled on 2006-04-19
> BS09418.5prime
GAAGTTATCAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTG
TGTTGGGTCTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATG
GAGCAAATCGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGG
AACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTG
ACCTGTACATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACA
GTGAAGCCCAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGAT
GCAGAAGGTCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATC
GACGTCGCAGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCT
ACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAA
GATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGA
ATATCTACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATG
TTCGACGGCTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACC
AAGTCTTGTGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGT
ATCCACGCAATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACG
GGACGGGATGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAA
CAATGTCACTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCC
BS09418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PA | 1557 | CG7227-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 402..1182 | 16..796 | 3905 | 100 | Plus |
| CG7227-RB | 2128 | CG7227-RB | 402..1182 | 16..796 | 3905 | 100 | Plus |
| CG7227-RA | 2270 | CG7227-RA | 544..1324 | 16..796 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7996114..7996753 | 655..16 | 3200 | 100 | Minus |
| 2L | 23513712 | 2L | 7995913..7996053 | 796..656 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:28:46 has no hits.
BS09418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:57 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:33 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:47 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 538..1324 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:45 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 538..1324 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:45 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995913..7996053 | 656..796 | 100 | <- | Minus |
| 2L | 7996114..7996759 | 9..655 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:47 Download gff for
BS09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995913..7996053 | 656..796 | 100 | <- | Minus |
| arm_2L | 7996114..7996759 | 9..655 | 99 | | Minus |
BS09418.complete Sequence
1589 bp (1589 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636415
> BS09418.complete
GAAGTTATCAGTCGACATGATTGGAAAACAGCGCATTTGGCAGACAAGTG
TGTTGGGTCTGCTTTTGGCCAGCTTCAGTCTGTTCTCCGTGCTCTATATG
GAGCAAATCGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCCCAGG
AACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTG
ACCTGTACATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACA
GTGAAGCCCAGGTTCGAGGAGCTTGGTCCGTATCGCTTCACCGAACGGAT
GCAGAAGGTCAATGTGGAGTGGCACGATGAGAACTCGACGGTTTCCTATC
GACGTCGCAGTCGATTCGATTTCGATCCGAAACTTAGTGTCGGACGTCCT
ACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACCAGAA
GATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGA
ATATCTACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATG
TTCGACGGCTTCGACACGCCGATGATCAAGATGAGCAAAATGGTGCCACC
AAGTCTTGTGCCGGAGATGAAGTTCCCCTATGAGAAGATCGGCTATGCGT
ATCCACGCAATGGCAGCATGGAAATCTACGGGCATCACAATGTGTACACG
GGACGGGATGAGTTCCAAAAACTGGGTCAAATAGCCAGGTGGCGCTACAA
CAATGTCACTGAGGCCAGTCCCAGGTGCAAGTTGAAGGGCAGCGCCGGAG
AATTCCATCCAATACCGCTGGTAAAGGGCAGACCCATCTCCTACTTCCTG
CCGGATCTGTGCCGTGAGCTGCAGGTGGACTACTCCGGCACCACAATCTT
CGAGGGCATCGATGCTTTCGTTTACAGAGGCAGTGCACGCAATATGGCAA
ATGGTACTGATAACCCGGATAACAGTTGCTATTGCCAGGATAACTGCCAG
GAGGTGAGATCCGGTCTTCTCAACATATCCTCCTGTTGGTATGGAACGCC
TGTCTTTGCTTCGTATCCGCACTTCTTCAAAGCTGATCCCTACTACGGAG
AGCAGGTGGAGGGCATGAAGCCCGACAAGGATCGCCACGAGATGGTCATT
ATGTTGGAGCCCAAAACGGGAATGGTGCTGGAGATCAAGGCGCGCATTAT
GGCCAACTTGCTGGTGGAGCCCAAAACTCATTTAATTTACCGGACGGCGA
GAAGAACATTCTTTCCGTTGATCTGGGCGGATTACAATGTCCGCATCACG
GATGATCTTCTGGTCTACGTGAAGCTAATGCCGATCCTTGAGTTTGTGGG
CAAGATCTGTGGCATCCTGGGCGTGGTCTTGGGTTTGCTGATGGTATTCT
GGTATCCCCATCAAATGATCTGGCAGAAGAGCCTGATGCACAAGATCGAG
ATTAGTTCCATCGAGACGAATAGCTCGTTGGAGCCTGTGAAGAATAATGA
TGTGGAGGACTCGCCACTGCTGAAGGGATTGCAATATGCAGCGGCCAAAG
ATGGGGCGGGAAATGGAAATTAAAAGCTTTCTAGACCAT
BS09418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 1557 | CG7227-PC | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG7227-RB | 1557 | CG7227-PB | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG7227-RA | 1557 | CG7227-PA | 1..1557 | 17..1573 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-RC | 2578 | CG7227-RC | 402..1959 | 16..1573 | 7790 | 100 | Plus |
| CG7227-RB | 2128 | CG7227-RB | 402..1959 | 16..1573 | 7790 | 100 | Plus |
| CG7227-RA | 2270 | CG7227-RA | 544..2101 | 16..1573 | 7790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7996114..7996753 | 655..16 | 3200 | 100 | Minus |
| 2L | 23513712 | 2L | 7995007..7995346 | 1573..1234 | 1700 | 100 | Minus |
| 2L | 23513712 | 2L | 7995753..7996053 | 956..656 | 1505 | 100 | Minus |
| 2L | 23513712 | 2L | 7995412..7995692 | 1233..953 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:41 has no hits.
BS09418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:21 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 1..1557 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:43 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 531..2100 | 9..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:37 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 545..2099 | 17..1571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:21 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 526..2095 | 9..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:08 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7227-RA | 545..2099 | 17..1571 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:08 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7995009..7995346 | 1234..1571 | 100 | <- | Minus |
| 2L | 7995412..7995691 | 954..1233 | 100 | <- | Minus |
| 2L | 7995756..7996053 | 656..953 | 100 | <- | Minus |
| 2L | 7996114..7996752 | 17..655 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:37 Download gff for
BS09418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7995756..7996053 | 656..953 | 100 | <- | Minus |
| arm_2L | 7995009..7995346 | 1234..1571 | 100 | <- | Minus |
| arm_2L | 7995412..7995691 | 954..1233 | 100 | <- | Minus |
| arm_2L | 7996114..7996752 | 17..655 | 100 | | Minus |
BS09418.pep Sequence
Translation from 16 to 1572
> BS09418.pep
MIGKQRIWQTSVLGLLLASFSLFSVLYMEQIERWMLEWFMVLRPGTMISS
LWQSPAMDINVDLYIFNWTNSEKFSDPTVKPRFEELGPYRFTERMQKVNV
EWHDENSTVSYRRRSRFDFDPKLSVGRPTDPIVAPNLLIVGLYQKMVMWS
PMLRSLMLLALNIYGKEQAMIRPASDWMFDGFDTPMIKMSKMVPPSLVPE
MKFPYEKIGYAYPRNGSMEIYGHHNVYTGRDEFQKLGQIARWRYNNVTEA
SPRCKLKGSAGEFHPIPLVKGRPISYFLPDLCRELQVDYSGTTIFEGIDA
FVYRGSARNMANGTDNPDNSCYCQDNCQEVRSGLLNISSCWYGTPVFASY
PHFFKADPYYGEQVEGMKPDKDRHEMVIMLEPKTGMVLEIKARIMANLLV
EPKTHLIYRTARRTFFPLIWADYNVRITDDLLVYVKLMPILEFVGKICGI
LGVVLGLLMVFWYPHQMIWQKSLMHKIEISSIETNSSLEPVKNNDVEDSP
LLKGLQYAAAKDGAGNGN*
BS09418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7227-PC | 518 | CG7227-PC | 1..518 | 1..518 | 2776 | 100 | Plus |
| CG7227-PB | 518 | CG7227-PB | 1..518 | 1..518 | 2776 | 100 | Plus |
| CG7227-PA | 518 | CG7227-PA | 1..518 | 1..518 | 2776 | 100 | Plus |
| santa-maria-PC | 563 | CG12789-PC | 21..477 | 12..468 | 942 | 39.3 | Plus |
| santa-maria-PA | 563 | CG12789-PA | 21..477 | 12..468 | 942 | 39.3 | Plus |
