Clone BS09420 Report

Search the DGRC for BS09420

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG5888-RA
Protein status:BS09420.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09420.3prime Sequence

896 bp (868 high quality bases) assembled on 2006-04-19

> BS09420.3prime
ATGGTCTAGAAAGCTTTTAGGGCTGCTCTTCCTCAACGGGATATTCCTTG
GCCTTTTTCCAGGAGTGCGTTGGCATCGCCTTCAGCTGATTTTCGTACGC
CTTCTTGGCTAGCACATCCTTGGCCTTCGGATTTGGCTTATTGCAGTTCT
CCGAGTCGGCAAAGTGGTCCAGATACTCATCTCGCTTGCAGTAGATGCAC
ACCCCGTAGATATACTCCTCCTCGCAGATTGTTGCATTCGTGGATCGAGC
CCAGTCGGCATTTTTCGCCGCCTTAAAGAGTTTGCCCACGTAGATATGGG
CAGTTGGGATGGGAGTAAAGGCATTCAGGGCAATGGTGGTTATCGGATTG
TGCTCCAAGTTCAGCACCTGTAGGTTCTTTAACTTGTCAAAAAGGCCGCT
CTGAATGCGATCCAAATTATTGAACGCCAAGTGAATCTCTAAAATCAAGG
GAGTGTTCCTGAAAAGCTGATCGGGCAGCCTGGCAATATTGTTTCTTTCC
AATCTTAAGGTGAGCAGTTTCTTTTGCACCTTAAGGAAGTCCTTGCTCAA
ATAGCTGATGTTGCTCCTTATTCCAATGTATGCCAATTGCTCCGACATCC
AGAACAACTCGGTTGGCACATTATCACCGCAATTGAAGAGCTCGATCGAC
TGAAGTTCGGTCATGTGCCAGAGTTCTTGGGGTCCAAAAGCGGACATTTC
GACACTACTGTTCTTGGCATCGCAGTCGATCATCAGATGTTTTAGCTTCG
ATTGCTTTGCAAATATTGCACCCGACACCTTGCCCAAATTCTTGACCACA
ATTTCCAAATGGGTTAGATTTTTCAAAGGATGCAAAATGTTACCGGGCAA
ATCACTGCTTCCCTTTAAGGAGAGTTGTTGTAGTGCCGGCAGGTTT

BS09420.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PA 1368 CG5888-RA 489..1368 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 522..1401 896..17 4400 100 Minus
CG5888-RA 1881 CG5888-RA 676..1555 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405436 399..896 2490 100 Plus
2L 23513712 2L 16404486..16404843 43..400 1790 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:16:12 has no hits.

BS09420.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:58 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 489..1368 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:35 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 489..1368 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:48:07 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 676..1558 12..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:47 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 676..1558 12..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:47 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16400498..16400526 12..42 93 <- Plus
2L 16404486..16404841 43..398 100 <- Plus
2L 16404939..16405436 399..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:48:07 Download gff for BS09420.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16400498..16400526 12..42 93 <- Plus
arm_2L 16404486..16404841 43..398 100 <- Plus
arm_2L 16404939..16405436 399..896 100   Plus

BS09420.5prime Sequence

900 bp (760 high quality bases) assembled on 2006-04-19

> BS09420.5prime
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCNTTCATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGTGCAAAGAAACTGCTCACCTTAAGATTG

BS09420.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PA 1368 CG5888-RA 1..862 17..878 4241 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 34..918 17..900 4355 99.7 Plus
CG5888-RA 1881 CG5888-RA 188..1072 17..900 4355 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16405040..16405924 900..17 4334 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 02:07:52 has no hits.

BS09420.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:59 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 1..885 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:36 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-PA 1..885 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:58 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 183..1072 8..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:01 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 183..1072 8..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:01 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16405040..16405929 8..900 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:58 Download gff for BS09420.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16405040..16405929 8..900 99   Minus

BS09420.complete Sequence

1400 bp (1400 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ638824

> BS09420.complete
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGTGCAAAAGAAACTGCTCACCTTAAGATT
GGAAAGAAACAATATTGCCAGGCTGCCCGATCAGCTTTTCAGGAACACTC
CCTTGATTTTAGAGATTCACTTGGCGTTCAATAATTTGGATCGCATTCAG
AGCGGCCTTTTTGACAAGTTAAAGAACCTACAGGTGCTGAACTTGGAGCA
CAATCCGATAACCACCATTGCCCTGAATGCCTTTACTCCCATCCCAACTG
CCCATATCTACGTGGGCAAACTCTTTAAGGCGGCGAAAAATGCCGACTGG
GCTCGATCCACGAATGCAACAATCTGCGAGGAGGAGTATATCTACGGGGT
GTGCATCTACTGCAAGCGAGATGAGTATCTGGACCACTTTGCCGACTCGG
AGAACTGCAATAAGCCAAATCCGAAGGCCAAGGATGTGCTAGCCAAGAAG
GCGTACGAAAATCAGCTGAAGGCGATGCCAACGCACTCCTGGAAAAAGGC
CAAGGAATATCCCGTTGAGGAAGAGCAGCCCTAAAAGCTTTCTAGACCAT

BS09420.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1368 CG5888-PB 1..1368 17..1384 6840 100 Plus
CG5888-RA 1368 CG5888-PA 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-RB 1727 CG5888-RB 34..1401 17..1384 6840 100 Plus
CG5888-RA 1881 CG5888-RA 188..1555 17..1384 6840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16404939..16405924 1002..17 4930 100 Minus
2L 23513712 2L 16404486..16404843 1358..1001 1790 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:42:00 has no hits.

BS09420.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:09 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:29 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 179..1554 8..1389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:29 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 188..1553 17..1382 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:09 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 179..1554 8..1389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:55 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
CG5888-RA 188..1553 17..1382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:55 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16400503..16400526 1359..1382 100 <- Minus
2L 16404486..16404841 1003..1358 100 <- Minus
2L 16404939..16405924 17..1002 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:29 Download gff for BS09420.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16400503..16400526 1359..1382 100 <- Minus
arm_2L 16404486..16404841 1003..1358 100 <- Minus
arm_2L 16404939..16405924 17..1002 100   Minus

BS09420.pep Sequence

Translation from 16 to 1383

> BS09420.pep
MWWLLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIK
CENLQLHSDNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQNCAIPNA
ESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSI
IGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNL
GKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELF
NCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERNNI
ARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITT
IALNAFTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVCIYCK
RDEYLDHFADSENCNKPNPKAKDVLAKKAYENQLKAMPTHSWKKAKEYPV
EEEQP*

BS09420.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5888-PB 455 CG5888-PB 1..455 1..455 2396 100 Plus
CG5888-PA 455 CG5888-PA 1..455 1..455 2396 100 Plus
Tl-PD 1097 CG5490-PD 42..434 41..356 184 23.1 Plus
Tl-PB 1097 CG5490-PB 42..434 41..356 184 23.1 Plus
Tl-PC 1117 CG5490-PC 42..434 41..356 184 23.1 Plus