Clone Sequence Records
BS09420.3prime Sequence
896 bp (868 high quality bases) assembled on 2006-04-19
> BS09420.3prime
ATGGTCTAGAAAGCTTTTAGGGCTGCTCTTCCTCAACGGGATATTCCTTG
GCCTTTTTCCAGGAGTGCGTTGGCATCGCCTTCAGCTGATTTTCGTACGC
CTTCTTGGCTAGCACATCCTTGGCCTTCGGATTTGGCTTATTGCAGTTCT
CCGAGTCGGCAAAGTGGTCCAGATACTCATCTCGCTTGCAGTAGATGCAC
ACCCCGTAGATATACTCCTCCTCGCAGATTGTTGCATTCGTGGATCGAGC
CCAGTCGGCATTTTTCGCCGCCTTAAAGAGTTTGCCCACGTAGATATGGG
CAGTTGGGATGGGAGTAAAGGCATTCAGGGCAATGGTGGTTATCGGATTG
TGCTCCAAGTTCAGCACCTGTAGGTTCTTTAACTTGTCAAAAAGGCCGCT
CTGAATGCGATCCAAATTATTGAACGCCAAGTGAATCTCTAAAATCAAGG
GAGTGTTCCTGAAAAGCTGATCGGGCAGCCTGGCAATATTGTTTCTTTCC
AATCTTAAGGTGAGCAGTTTCTTTTGCACCTTAAGGAAGTCCTTGCTCAA
ATAGCTGATGTTGCTCCTTATTCCAATGTATGCCAATTGCTCCGACATCC
AGAACAACTCGGTTGGCACATTATCACCGCAATTGAAGAGCTCGATCGAC
TGAAGTTCGGTCATGTGCCAGAGTTCTTGGGGTCCAAAAGCGGACATTTC
GACACTACTGTTCTTGGCATCGCAGTCGATCATCAGATGTTTTAGCTTCG
ATTGCTTTGCAAATATTGCACCCGACACCTTGCCCAAATTCTTGACCACA
ATTTCCAAATGGGTTAGATTTTTCAAAGGATGCAAAATGTTACCGGGCAA
ATCACTGCTTCCCTTTAAGGAGAGTTGTTGTAGTGCCGGCAGGTTT
BS09420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-PA | 1368 | CG5888-RA | 489..1368 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-RB | 1727 | CG5888-RB | 522..1401 | 896..17 | 4400 | 100 | Minus |
CG5888-RA | 1881 | CG5888-RA | 676..1555 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16404939..16405436 | 399..896 | 2490 | 100 | Plus |
2L | 23513712 | 2L | 16404486..16404843 | 43..400 | 1790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:16:12 has no hits.
BS09420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:58 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-PA | 489..1368 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:35 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-PA | 489..1368 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:48:07 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 676..1558 | 12..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:47 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 676..1558 | 12..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:47 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16400498..16400526 | 12..42 | 93 | <- | Plus |
2L | 16404486..16404841 | 43..398 | 100 | <- | Plus |
2L | 16404939..16405436 | 399..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:48:07 Download gff for
BS09420.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16400498..16400526 | 12..42 | 93 | <- | Plus |
arm_2L | 16404486..16404841 | 43..398 | 100 | <- | Plus |
arm_2L | 16404939..16405436 | 399..896 | 100 | | Plus |
BS09420.5prime Sequence
900 bp (760 high quality bases) assembled on 2006-04-19
> BS09420.5prime
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCNTTCATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGTGCAAAGAAACTGCTCACCTTAAGATTG
BS09420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-PA | 1368 | CG5888-RA | 1..862 | 17..878 | 4241 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-RB | 1727 | CG5888-RB | 34..918 | 17..900 | 4355 | 99.7 | Plus |
CG5888-RA | 1881 | CG5888-RA | 188..1072 | 17..900 | 4355 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16405040..16405924 | 900..17 | 4334 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:07:52 has no hits.
BS09420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:59 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:36 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-PA | 1..885 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:58 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 183..1072 | 8..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:01 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 183..1072 | 8..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:01 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16405040..16405929 | 8..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:58 Download gff for
BS09420.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16405040..16405929 | 8..900 | 99 | | Minus |
BS09420.complete Sequence
1400 bp (1400 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ638824
> BS09420.complete
GAAGTTATCAGTCGACATGTGGTGGCTACTTCTTTTGCTGTCCCTAATTG
CGCCGTCGTGGCAGGAGAATGCCACAGTGATCAATCCAAGTTATGTGACC
AAAGCTGGTTGTGAGGCATTGGTCAAGGAACCAAATCTCTGCGAGTGCCA
GGAGCAGGAGATCAAGTGCGAGAACCTTCAATTGCACAGTGATAATTTGC
AGTTATACGGCATTAGCTGTAGTATATTCGATGCCAGGGGATTCGGCTAT
ATACCACCGCTTAAGGTGGGCAATATCGGTTCCCTGATCGTTCAAAACTG
TGCCATACCAAATGCAGAAAGCATCAAATACTTGCTCAGTAAGCTGGGTG
TTAGCAACTACACCGAACTGGAGATCTTCAACTATTTCGATCCCAAGAAA
ACGGATCGAGGCGAGGTCCTGCAGCAACACTACACGGATCACGAGAGTCT
GAAGAAAGTATCCATCATTGGATTCAAGTCAACACTGCCTGAAAATTTTC
TTGAAAACCTGCCGGCACTACAACAACTCTCCTTAAAGGGAAGCAGTGAT
TTGCCCGGTAACATTTTGCATCCTTTGAAAAATCTAACCCATTTGGAAAT
TGTGGTCAAGAATTTGGGCAAGGTGTCGGGTGCAATATTTGCAAAGCAAT
CGAAGCTAAAACATCTGATGATCGACTGCGATGCCAAGAACAGTAGTGTC
GAAATGTCCGCTTTTGGACCCCAAGAACTCTGGCACATGACCGAACTTCA
GTCGATCGAGCTCTTCAATTGCGGTGATAATGTGCCAACCGAGTTGTTCT
GGATGTCGGAGCAATTGGCATACATTGGAATAAGGAGCAACATCAGCTAT
TTGAGCAAGGACTTCCTTAAGGTGCAAAAGAAACTGCTCACCTTAAGATT
GGAAAGAAACAATATTGCCAGGCTGCCCGATCAGCTTTTCAGGAACACTC
CCTTGATTTTAGAGATTCACTTGGCGTTCAATAATTTGGATCGCATTCAG
AGCGGCCTTTTTGACAAGTTAAAGAACCTACAGGTGCTGAACTTGGAGCA
CAATCCGATAACCACCATTGCCCTGAATGCCTTTACTCCCATCCCAACTG
CCCATATCTACGTGGGCAAACTCTTTAAGGCGGCGAAAAATGCCGACTGG
GCTCGATCCACGAATGCAACAATCTGCGAGGAGGAGTATATCTACGGGGT
GTGCATCTACTGCAAGCGAGATGAGTATCTGGACCACTTTGCCGACTCGG
AGAACTGCAATAAGCCAAATCCGAAGGCCAAGGATGTGCTAGCCAAGAAG
GCGTACGAAAATCAGCTGAAGGCGATGCCAACGCACTCCTGGAAAAAGGC
CAAGGAATATCCCGTTGAGGAAGAGCAGCCCTAAAAGCTTTCTAGACCAT
BS09420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-RB | 1368 | CG5888-PB | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG5888-RA | 1368 | CG5888-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-RB | 1727 | CG5888-RB | 34..1401 | 17..1384 | 6840 | 100 | Plus |
CG5888-RA | 1881 | CG5888-RA | 188..1555 | 17..1384 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16404939..16405924 | 1002..17 | 4930 | 100 | Minus |
2L | 23513712 | 2L | 16404486..16404843 | 1358..1001 | 1790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:00 has no hits.
BS09420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:09 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:29 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 179..1554 | 8..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:29 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 188..1553 | 17..1382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:09 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 179..1554 | 8..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:55 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5888-RA | 188..1553 | 17..1382 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:55 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16400503..16400526 | 1359..1382 | 100 | <- | Minus |
2L | 16404486..16404841 | 1003..1358 | 100 | <- | Minus |
2L | 16404939..16405924 | 17..1002 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:29 Download gff for
BS09420.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16400503..16400526 | 1359..1382 | 100 | <- | Minus |
arm_2L | 16404486..16404841 | 1003..1358 | 100 | <- | Minus |
arm_2L | 16404939..16405924 | 17..1002 | 100 | | Minus |
BS09420.pep Sequence
Translation from 16 to 1383
> BS09420.pep
MWWLLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIK
CENLQLHSDNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQNCAIPNA
ESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSI
IGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNL
GKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELF
NCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERNNI
ARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITT
IALNAFTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVCIYCK
RDEYLDHFADSENCNKPNPKAKDVLAKKAYENQLKAMPTHSWKKAKEYPV
EEEQP*
BS09420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5888-PB | 455 | CG5888-PB | 1..455 | 1..455 | 2396 | 100 | Plus |
CG5888-PA | 455 | CG5888-PA | 1..455 | 1..455 | 2396 | 100 | Plus |
Tl-PD | 1097 | CG5490-PD | 42..434 | 41..356 | 184 | 23.1 | Plus |
Tl-PB | 1097 | CG5490-PB | 42..434 | 41..356 | 184 | 23.1 | Plus |
Tl-PC | 1117 | CG5490-PC | 42..434 | 41..356 | 184 | 23.1 | Plus |