Clone Sequence Records
BS09422.3prime Sequence
934 bp (786 high quality bases) assembled on 2006-04-19
> BS09422.3prime
ATGGTCTAGAAAGCTTTTAGTCCTCCTTCTCCTCTTTGGCGGACATGAAG
AGCTTCTGGCAAGTGAAGGTCACCGAGTCAATCGTGCTCTGCACCCATTT
CGGCTTATTCTTCCACACGACGCCCACGTAGTAGAAAGGTATGCCAATTA
TGGTGATTAATACCCCCATTCCGACCTCATAGGGCGCCACATAGATGGGC
ACGACAACTAAGAATGCGCACACGATGACGAATAGGGCGGGAATCCACAT
GGCGACTTTAATTGGCCGCTCCATGCAGGGACGGGTGTAGCGGAAATATA
GAACCGCCGACACCGACAACATTATAAAGAACGATTCCACAATGCTGGCG
TAGGTGATCAGCACATACACATCGCTCACCACCAGCATCACAATGGAGAG
AAAGCACAGAAAAACGAGCGACGGCAGTGGGGTGTAGCTCTTTACGCTGA
TGTGCGACAGAATCGCCGGCATGTGTCCATTGCGGGCACCCACGAAGCAG
ATGCGGGAGGAGGTCATGATGTGGACGGAAAGGCCGCCAAAAGCAGATAT
GGCCACCATGAGGGGTATGATCAGTGAAAACACGCCGAGAATCTTATCGC
CAAAGGTCACAGCGATGGCATTGGATGCGATCATCTCCGAGGGCGACAGC
ACGGCCAGATAAGCCACATTGGCCAGCACATAAATGCCGGTGACCAGAGG
TAGGGAGATGTAAATGGCGCGCGGCAGGTTGCGATATGGATCGCGGAGCT
CCTCCGTCATGAAGTTCAAGTAATTCCATCCGGCATAGGAAAAGATACCG
GAGTAAAAGGCTACCGACATCTTGCCGGGATCAGTCTCAGTGTTATCAAA
GGGTCTCGTGAAGTTCTCCACGTTGCCCATCATCATCCAGACCAGGCCTA
CCAGGATGATCAAGACCAGGGCGGCGATCTTGGT
BS09422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6070-PA | 1554 | CG6070-RA | 637..1554 | 934..17 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 743..1661 | 934..16 | 4595 | 100 | Minus |
| gb-RA | 2635 | CG6070-RA | 1188..2106 | 934..16 | 4595 | 100 | Minus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 811..650 | 255 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110134..27110460 | 608..934 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 27109682..27109883 | 407..608 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 27109127..27109304 | 79..256 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 27109449..27109601 | 255..407 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 27108996..27109059 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:07:22 has no hits.
BS09422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:02 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 637..1554 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:41 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 637..1554 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:58 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1188..2108 | 12..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:44 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1188..2108 | 12..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:44 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27108994..27109058 | 12..78 | 97 | <- | Plus |
| 3R | 27109127..27109304 | 79..256 | 100 | <- | Plus |
| 3R | 27109451..27109600 | 257..406 | 100 | <- | Plus |
| 3R | 27109682..27109882 | 407..607 | 100 | <- | Plus |
| 3R | 27110134..27110460 | 608..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:58 Download gff for
BS09422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22934716..22934780 | 12..78 | 97 | <- | Plus |
| arm_3R | 22934849..22935026 | 79..256 | 100 | <- | Plus |
| arm_3R | 22935173..22935322 | 257..406 | 100 | <- | Plus |
| arm_3R | 22935404..22935604 | 407..607 | 100 | <- | Plus |
| arm_3R | 22935856..22936182 | 608..934 | 100 | | Plus |
BS09422.5prime Sequence
919 bp (832 high quality bases) assembled on 2006-04-19
> BS09422.5prime
GAAGTTATCAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCA
GCGAAATGGTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATT
GCCCAACCAGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATC
CGCCGAGTCAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCC
TCGAAGGAGTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTT
GTTTCTCCGAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCT
GGTCATCTGGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCT
ACGCGGAACTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTAT
ATCTTCGAGGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGC
CATGATGATATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTG
CCTCCTACGTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAA
ATAGCGTTACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCT
GAATTCGTACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGT
TCACCAAGATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGG
ATGATGATGGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGA
GACTGATCCCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCT
ATGCCGGATGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCA
TATCGCAACCTGCCGCGCGCCATTTACATCTCCCTACCTCTGGTCACCGG
CATTTATGTGCTGGGCCAT
BS09422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6070-PA | 1554 | CG6070-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1004 | 16..914 | 4495 | 100 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..1449 | 16..914 | 4495 | 100 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1009 | 776..914 | 230 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27111271..27111720 | 465..16 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27110199..27110647 | 914..466 | 2245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:43:13 has no hits.
BS09422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:03 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 1..901 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:42 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 1..901 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:40 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 542..1452 | 6..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:52 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 542..1452 | 6..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:52 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27110194..27110647 | 466..919 | 99 | <- | Minus |
| 3R | 27111271..27111729 | 6..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:40 Download gff for
BS09422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22935916..22936369 | 466..919 | 99 | <- | Minus |
| arm_3R | 22936993..22937451 | 6..465 | 99 | | Minus |
BS09422.complete Sequence
1586 bp (1586 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636416
> BS09422.complete
GAAGTTATCAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCA
GCGAAATGGTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATT
GCCCAACCAGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATC
CGCCGAGTCAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCC
TCGAAGGAGTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTT
GTTTCTCCGAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCT
GGTCATCTGGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCT
ACGCGGAACTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTAT
ATCTTCGAGGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGC
CATGATGATATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTG
CCTCCTACGTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAA
ATAGCGTTACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCT
GAATTCGTACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGT
TCACCAAGATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGG
ATGATGATGGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGA
GACTGATCCCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCT
ATGCCGGATGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCA
TATCGCAACCTGCCGCGCGCCATTTACATCTCCCTACCTCTGGTCACCGG
CATTTATGTGCTGGCCAATGTGGCTTATCTGGCCGTGCTGTCGCCCTCGG
AGATGATCGCATCCAATGCCATCGCTGTGACCTTTGGCGATAAGATTCTC
GGCGTGTTTTCACTGATCATACCCCTCATGGTGGCCATATCTGCTTTTGG
CGGCCTTTCCGTCCACATCATGACCTCCTCCCGCATCTGCTTCGTGGGTG
CCCGCAATGGACACATGCCGGCGATTCTGTCGCACATCAGCGTAAAGAGC
TACACCCCACTGCCGTCGCTCGTTTTTCTGTGCTTTCTCTCCATTGTGAT
GCTGGTGGTGAGCGATGTGTATGTGCTGATCACCTACGCCAGCATTGTGG
AATCGTTCTTTATAATGTTGTCGGTGTCGGCGGTTCTATATTTCCGCTAC
ACCCGTCCCTGCATGGAGCGGCCAATTAAAGTCGCCATGTGGATTCCCGC
CCTATTCGTCATCGTGTGCGCATTCTTAGTTGTCGTGCCCATCTATGTGG
CGCCCTATGAGGTCGGAATGGGGGTATTAATCACCATAATTGGCATACCT
TTCTACTACGTGGGCGTCGTGTGGAAGAATAAGCCGAAATGGGTGCAGAG
CACGATTGACTCGGTGACCTTCACTTGCCAGAAGCTCTTCATGTCCGCCA
AAGAGGAGAAGGAGGACTAAAAGCTTTCTAGACCAT
BS09422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 1554 | CG6070-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| gb-RA | 1554 | CG6070-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
| JhI-21-RC | 1503 | CG12317-PC | 700..861 | 776..937 | 255 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..1661 | 16..1571 | 7780 | 100 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..2106 | 16..1571 | 7780 | 100 | Plus |
| JhI-21-RC | 2149 | CG12317-RC | 871..1032 | 776..937 | 255 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27110134..27110647 | 979..466 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 27111271..27111720 | 465..16 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27109682..27109883 | 1180..979 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 27109127..27109304 | 1508..1331 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 27109449..27109601 | 1332..1180 | 765 | 100 | Minus |
| 3R | 32079331 | 3R | 27108996..27109059 | 1571..1508 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:20 has no hits.
BS09422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:10 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:31 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 527..2093 | 6..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:31 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 552..2103 | 17..1568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:10 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 527..2093 | 6..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:55 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 552..2103 | 17..1568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:55 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27109682..27109882 | 980..1180 | 100 | <- | Minus |
| 3R | 27108999..27109058 | 1509..1568 | 100 | <- | Minus |
| 3R | 27109127..27109304 | 1331..1508 | 100 | <- | Minus |
| 3R | 27109451..27109600 | 1181..1330 | 100 | <- | Minus |
| 3R | 27110134..27110647 | 466..979 | 100 | <- | Minus |
| 3R | 27111271..27111719 | 17..465 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:31 Download gff for
BS09422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22934721..22934780 | 1509..1568 | 100 | <- | Minus |
| arm_3R | 22934849..22935026 | 1331..1508 | 100 | <- | Minus |
| arm_3R | 22935173..22935322 | 1181..1330 | 100 | <- | Minus |
| arm_3R | 22935404..22935604 | 980..1180 | 100 | <- | Minus |
| arm_3R | 22935856..22936369 | 466..979 | 100 | <- | Minus |
| arm_3R | 22936993..22937441 | 17..465 | 100 | | Minus |
BS09422.pep Sequence
Translation from 16 to 1569
> BS09422.pep
MPAADELQSPSSEMVLLTPSSGNPPSSIAQPAANPAEKAQCREGSAESDS
SRVVIKKQLGLLEGVAIILGIIFGSGIFVSPKGVIREVESVGASLVIWVL
CGLLSMIGALCYAELGTAIPKSGGDYAYIFEAYGSLPAFLYLWDAMMIFV
PTTNAIMGLTFASYVLEPFFGGACEIPKIALQLLAAITICFLTYLNSYYM
KVTTKMQNVIMFTKIAALVLIILVGLVWMMMGNVENFTRPFDNTETDPGK
MSVAFYSGIFSYAGWNYLNFMTEELRDPYRNLPRAIYISLPLVTGIYVLA
NVAYLAVLSPSEMIASNAIAVTFGDKILGVFSLIIPLMVAISAFGGLSVH
IMTSSRICFVGARNGHMPAILSHISVKSYTPLPSLVFLCFLSIVMLVVSD
VYVLITYASIVESFFIMLSVSAVLYFRYTRPCMERPIKVAMWIPALFVIV
CAFLVVVPIYVAPYEVGMGVLITIIGIPFYYVGVVWKNKPKWVQSTIDSV
TFTCQKLFMSAKEEKED*
BS09422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-PB | 517 | CG6070-PB | 1..517 | 1..517 | 2632 | 100 | Plus |
| gb-PA | 517 | CG6070-PA | 1..517 | 1..517 | 2632 | 100 | Plus |
| mnd-PD | 499 | CG3297-PD | 20..497 | 35..516 | 1334 | 53.6 | Plus |
| mnd-PA | 499 | CG3297-PA | 20..497 | 35..516 | 1334 | 53.6 | Plus |
| mnd-PC | 499 | CG3297-PC | 20..497 | 35..516 | 1334 | 53.6 | Plus |
