Clone Sequence Records
BS09426.3prime Sequence
860 bp (848 high quality bases) assembled on 2006-04-19
> BS09426.3prime
ATGGTCTAGAAAGCTTTTAACAGGGGCCGCTGGGTCCACAAGGCACTTGA
GGACCGCAAGGACCAACTGGGCCGCAGTGGGTATTCCAGGGAGTTGGGGC
GCACGGGTAGCAGGGGCCGCACTCGGGTGACTCGTACGGACACGGGGGCG
AACAGGGTCCGCAGGGTCCGCAAGGACCGCAAGGACTATTGCCGAGCGGT
CCACATGGCCCGCATGGAGCACAGGGTCCACACGGAGCCGGGACAAACGG
ACCCGACGGCATTGTGAGGCCGCAGGGCCCGCAATTGGGCACGGCGCACG
GTCCACCCGGACCGCATCTCGGCCCACAGGGTCCGCACGGGCCGGGTCCG
CAGGGACCACATCGCGGACCGCAGGGTCCGCATCCTGGACCGCAAGGTCC
ACAGGGTCCGCACCTACCCTCGGCAACGGGATACTGGTTTGTGGAGAAGC
AGGGCAGCGGACAGCAGGGTCCTCCAGGAGCACATGGTCCAATGGGGCAG
GGTGGGCACGCTGCACTGGGCTTGTAGTTGATGGGTCCATTTGGATAGCA
GCAGTACTCCCTTGGCGGCGGAATGTCGATGGTCTGTGGCTTCGGCTGGC
ACAGGATCGACTGACACACCTCCCGGGGTTCGCAGACGCGCTTGGGATAG
CACACCACATAGGGATCGGGGATCATCGAGGGGTAGTAGATTACTCTGGG
TTCTCGCACCATCTGCGACACCCAAATCAGCTTGGGCACCTTGATCACCC
GCGTGGCATCAACGACCTTTGGAATGGTAATCTGTCTGCATCGGTTAACC
ACCATTGGCTCCGGCACAATCTTCTCCGTGAACACCACGCGTTTCTTGCA
GATCATGCCG
BS09426.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11719-PA | 1005 | Mst98Ca-RA | 164..1005 | 858..17 | 4210 | 100 | Minus |
| CG18396-PA | 798 | Mst98Cb-RA | 164..587 | 858..435 | 1870 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Ca-RA | 1319 | CG11719-RA | 285..1126 | 858..17 | 4210 | 100 | Minus |
| Mst98Cb-RA | 1066 | CG18396-RA | 281..770 | 858..369 | 2105 | 95.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28291622..28292463 | 858..17 | 4210 | 100 | Minus |
| 3R | 32079331 | 3R | 28293078..28293567 | 858..369 | 2105 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:54:22 has no hits.
BS09426.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:11 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11719-PA | 163..1005 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:52 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11719-PA | 163..1005 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:34 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 284..1126 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:54 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 284..1126 | 17..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:54 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28291621..28292463 | 17..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:34 Download gff for
BS09426.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24117343..24118185 | 17..860 | 99 | | Minus |
BS09426.5prime Sequence
877 bp (792 high quality bases) assembled on 2006-04-19
> BS09426.5prime
GAAGTTATCAGTCGACATGTGCTCTCCGTGCGGTCCTTGTAGTCCATGCG
ATCCCTGCTGCGGTCCCTTCGAGTGCTCACCCAAGTGCTATAATGCCGCC
CAATTGGAGGCCTTGCCACAATGTGCTCCACGTATTCCACCTCCCTTCCC
CAAATGCATCACCGTGCAGCAACCACCACGCATGATCTGCAAGAAACGCG
TGGTGTTCACGGAGAAGATTGTGCCGGAGCCAATGGTGGTTAACCGATGC
AGACAGATTACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATCAAGGT
GCCCAAGCTGATTTGGGTGTCGCAGATGGTGCGAGAACCCAGAGTAATCT
ACTACCCCTCGATGATCCCCGATCCCTATGTGGTGTGCTATCCCAAGCGC
GTCTGCGAACCCCGGGAGGTGTGTCAGTCGATCCTGTGCCAGCCGAAGCC
ACAGACCATCGACATTCCGCCGCCAAGGGAGTACTGCTGCTATCCAAATG
GACCCATCAACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCATTGGA
CCATGTGCTCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCCACAAA
CCAGTATCCCGTTGCCGAGGGTAGGTGCGGACCCTGTGGACCTTGCGGTC
CAGGATGCGGACCCTGCGGTCCGCGATGTGGTCCCTGCGGACCCGGCCCG
TGCGGACCCTGTGGGCCGAGATGCGGTCCGGGTGGACCGTGCGCCGTGCC
CAATTGCGGGCCCTGCGGCCTCACAATGCCGTCGGGTCCGTTTGTCCCGG
CTCCGTGTGGACCCTGTGCTCCATGCGGGCCATGTGGACCGCTCGGCATA
GNTCCTTGCGGTCCTTGCGGAACCCTG
BS09426.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11719-PA | 1005 | Mst98Ca-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
| CG18396-PA | 798 | Mst98Cb-RA | 1..587 | 17..603 | 2635 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Ca-RA | 1319 | CG11719-RA | 120..981 | 15..877 | 4245 | 99.7 | Plus |
| Mst98Cb-RA | 1066 | CG18396-RA | 118..770 | 17..669 | 2890 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28291457..28292313 | 15..871 | 4229 | 99.5 | Plus |
| 3R | 32079331 | 3R | 28292915..28293567 | 17..669 | 2890 | 96.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:29:06 has no hits.
BS09426.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:13 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11719-PA | 1..860 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:53 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11719-PA | 1..860 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:16 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 112..981 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:12 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 112..981 | 10..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:12 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28291449..28292318 | 10..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:16 Download gff for
BS09426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24117171..24118040 | 10..877 | 99 | | Plus |
BS09426.complete Sequence
1037 bp (1037 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636417
> BS09426.complete
GAAGTTATCAGTCGACATGTGCTCTCCGTGCGGTCCTTGTAGTCCATGCG
ATCCCTGCTGCGGTCCCTTCGAGTGCTCACCCAAGTGCTATAATGCCGCC
CAATTGGAGGCCTTGCCACAATGTGCTCCACGTATTCCACCTCCCTTCCC
CAAATGCATCACCGTGCAGCAACCACCACGCATGATCTGCAAGAAACGCG
TGGTGTTCACGGAGAAGATTGTGCCGGAGCCAATGGTGGTTAACCGATGC
AGACAGATTACCATTCCAAAGGTCGTTGATGCCACGCGGGTGATCAAGGT
GCCCAAGCTGATTTGGGTGTCGCAGATGGTGCGAGAACCCAGAGTAATCT
ACTACCCCTCGATGATCCCCGATCCCTATGTGGTGTGCTATCCCAAGCGC
GTCTGCGAACCCCGGGAGGTGTGTCAGTCGATCCTGTGCCAGCCGAAGCC
ACAGACCATCGACATTCCGCCGCCAAGGGAGTACTGCTGCTATCCAAATG
GACCCATCAACTACAAGCCCAGTGCAGCGTGCCCACCCTGCCCCATTGGA
CCATGTGCTCCTGGAGGACCCTGCTGTCCGCTGCCCTGCTTCTCCACAAA
CCAGTATCCCGTTGCCGAGGGTAGGTGCGGACCCTGTGGACCTTGCGGTC
CAGGATGCGGACCCTGCGGTCCGCGATGTGGTCCCTGCGGACCCGGCCCG
TGCGGACCCTGTGGGCCGAGATGCGGTCCGGGTGGACCGTGCGCCGTGCC
CAATTGCGGGCCCTGCGGCCTCACAATGCCGTCGGGTCCGTTTGTCCCGG
CTCCGTGTGGACCCTGTGCTCCATGCGGGCCATGTGGACCGCTCGGCAAT
AGTCCTTGCGGTCCTTGCGGACCCTGCGGACCCTGTTCGCCCCCGTGTCC
GTACGAGTCACCCGAGTGCGGCCCCTGCTACCCGTGCGCCCCAACTCCCT
GGAATACCCACTGCGGCCCAGTTGGTCCTTGCGGTCCTCAAGTGCCTTGT
GGACCCAGCGGCCCCTGTTAAAAGCTTTCTAGACCAT
BS09426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Ca-RA | 1005 | CG11719-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| Mst98Cb-RA | 798 | CG18396-PA | 1..653 | 17..669 | 2890 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Ca-RA | 1319 | CG11719-RA | 120..1126 | 15..1021 | 5035 | 100 | Plus |
| Mst98Cb-RA | 1066 | CG18396-RA | 118..770 | 17..669 | 2890 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28291457..28292463 | 15..1021 | 5035 | 100 | Plus |
| 3R | 32079331 | 3R | 28292915..28293567 | 17..669 | 2890 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:44 has no hits.
BS09426.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:51 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 1..1005 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:06 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 117..1131 | 10..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:34 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 122..1124 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:51 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 117..1131 | 10..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:13 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst98Ca-RA | 122..1124 | 17..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:13 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28291459..28292461 | 17..1019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:34 Download gff for
BS09426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24117181..24118183 | 17..1019 | 100 | | Plus |
BS09426.pep Sequence
Translation from 16 to 1020
> BS09426.pep
MCSPCGPCSPCDPCCGPFECSPKCYNAAQLEALPQCAPRIPPPFPKCITV
QQPPRMICKKRVVFTEKIVPEPMVVNRCRQITIPKVVDATRVIKVPKLIW
VSQMVREPRVIYYPSMIPDPYVVCYPKRVCEPREVCQSILCQPKPQTIDI
PPPREYCCYPNGPINYKPSAACPPCPIGPCAPGGPCCPLPCFSTNQYPVA
EGRCGPCGPCGPGCGPCGPRCGPCGPGPCGPCGPRCGPGGPCAVPNCGPC
GLTMPSGPFVPAPCGPCAPCGPCGPLGNSPCGPCGPCGPCSPPCPYESPE
CGPCYPCAPTPWNTHCGPVGPCGPQVPCGPSGPC*
BS09426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst98Ca-PA | 334 | CG11719-PA | 1..334 | 1..334 | 2065 | 100 | Plus |
| Mst98Cb-PA | 265 | CG18396-PA | 1..265 | 1..290 | 1479 | 89.3 | Plus |
| Mst84Db-PA | 74 | CG17934-PA | 2..70 | 157..275 | 245 | 45.4 | Plus |
| Mst84Db-PA | 74 | CG17934-PA | 3..73 | 221..323 | 230 | 48.6 | Plus |
| Mst84Db-PA | 74 | CG17934-PA | 3..68 | 247..334 | 229 | 50.6 | Plus |
| Mst84Dd-PA | 72 | CG17935-PA | 3..56 | 180..273 | 229 | 50.5 | Plus |
| Mst84Dd-PA | 72 | CG17935-PA | 2..56 | 213..290 | 228 | 57 | Plus |
| Pif2-PA | 118 | CG31483-PA | 8..113 | 170..320 | 214 | 38.8 | Plus |
| Mst84Dd-PA | 72 | CG17935-PA | 3..55 | 229..309 | 210 | 49.4 | Plus |
| Mst84Dd-PA | 72 | CG17935-PA | 3..56 | 236..334 | 200 | 47 | Plus |
| Mst84Dd-PA | 72 | CG17935-PA | 3..58 | 158..237 | 195 | 52.5 | Plus |
