Clone Sequence Records
BS09429.3prime Sequence
900 bp (827 high quality bases) assembled on 2006-04-19
> BS09429.3prime
ATGGTCTAGAAAGCTTTTATTGCTGAGCAGCCGCCCTGGCGAGCCGATCG
TGGCAGGATAGGTGCACGATGTGCCCATTTGGATAGCGCACGAAGGCGGA
CTGGGTTTGAAAACGCTTCTTGCACTCGGAACACACACTAGACTCGTTTA
ACTCGAAGCTAATGTTTCGCTGCTCCTCCAAGGCATTCTCCAGGCGCGTG
GACTCTGCCTCCAGGAAGCCGCACATCATCTGCATCTCGTGCTTGTCGGC
CATCATTTTACGTATAGATTTCTCCAAGTATTTCTCCAGCTGGGGCATGG
GCATGTCATCGGGAAGGTGCTCGAAGATCTCGAATGGATCGATTCTGGTG
GCGTGGGTGTTAAGTATTTCCAGGGCCACCTCTCGATTCACTTGCGAGAA
ATCCGGATGCAAGGGCACACCATCATAGAGCGGTTGAGTTGGTGGTATTA
ATATGCACTTAATGAGCGTGTGAAATATGTGCTTGTCCTCTTTGTAATGG
GCTTCCGCATAGGCCGTTGCCTTGGCCACATCTCCGAGAACATGAATATA
GATGGACAGGACGTTGTCGTGCTTTTTGAGCCTGCCCAGGATTAGGGCAC
GCTCCTCCAAGAGTATATTGGTTGGAAATTCCTCTAGGAGGCGATCCGGC
GAATAGTCGTTGGACTCCTCCAACATCTTGTAGAGCTTGGCTCGCATCGG
AATGAGTTCGGGAACTTCCTCTCCTTTTTCCTGCTGAGCAAGAAGCCGTT
GCACCTTTTCGCGATACTGCTTGAGGAGCACATTGTGGAGCANGGTGTTG
CCGTCCTTCCATTCAGTGATTACGTGCTCCAAATAGGGAATGACAAGTGC
TTTGTGCTTTGCTATAAAAAAATCAAGAACTTTGGCGCGCGGCAGGGATT
BS09429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7146-PA | 2631 | CG7146-RA | 1789..2631 | 859..17 | 4196 | 99.8 | Minus |
| CG7146-PA | 2631 | CG7146-RA | 1748..1784 | 900..864 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2915 | CG7146-RA | 1841..2724 | 900..17 | 4364 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18271746..18272149 | 320..723 | 2020 | 100 | Plus |
| 3R | 32079331 | 3R | 18271380..18271684 | 17..321 | 1525 | 100 | Plus |
| 3R | 32079331 | 3R | 18272203..18272380 | 723..900 | 819 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:23:42 has no hits.
BS09429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:16 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-PA | 1748..2631 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:57 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-PA | 1748..2631 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:56 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 1841..2724 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:18 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps39-RA | 1841..2724 | 17..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:18 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18271380..18271682 | 17..319 | 100 | <- | Plus |
| 3R | 18271746..18272148 | 320..722 | 100 | <- | Plus |
| 3R | 18272203..18272380 | 723..900 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:56 Download gff for
BS09429.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14097102..14097404 | 17..319 | 100 | <- | Plus |
| arm_3R | 14097468..14097870 | 320..722 | 100 | <- | Plus |
| arm_3R | 14097925..14098102 | 723..900 | 98 | | Plus |
BS09429.5prime Sequence
868 bp (828 high quality bases) assembled on 2006-04-19
> BS09429.5prime
GAAGTTATCAGTCGACATGCACCAGGCCTACAGTGTTCACTCGATCCTGA
AACAGGGCGTGCAGATAGAGTCAATTGCGGCATATGGCAACCATGTCATC
TTGGGCACCCGCAGCGGACAGCTGATCATGTACTCTGTGGACGAGGAGAC
GGGCGTGGACATGCGGATGTTCAACAAGAACTTCAGCCGGAAACCGATCA
CCCAAATGGAAGTGATTGCCTCGGAGAACCTGCTCTTCGTACTCACCGAC
TTACAGGTGCAGGTGTGCGACATTCGGCGGATTGAGAGCAACTTCGCTTT
CATGCACAGTGCGCCCGACACGAAGGGATGCACCCTGTTCACCATGGACG
TGGACACGCCGAAGTCCACAACCGGACGTGTGGCCACCGTCATACGGGTG
TGCTGCGCTATCCGGCGGCGTCTTGTGTTCTTCTTTTGGAAGGAGGACAA
GCTTAATTCCCTGGAATTGATCATCGAGCTCAGCGATGTGCCCAGGACAC
TGTGCTGGGTGGGCCATGCTGTCTGCGTGGGCTTCAAAGACGAATATGTT
GTTTACGATATATCAGGAAAAGCACCAAAGAAGCACAACCTCTTCCTTAC
CTCCTCTAGTATCAGCAGAGATCCCTGCATTTGCCTTATCCGGAACAACA
TGTTGGGCATCTCTAAGGACAGCTACCTCGTCGTAGTAGATCCGAGTCAG
TACAAAGAATCGGATGGAATCAATAACTCAACAGATGTCCGGCCAGCTGC
CATGGACAGCAATAGTTCCCTAACTCCTCTGCTCTGGTCAAGTCCGCTTT
TAGATCTGGTCTGGGATGAGCCATTCGCTGTGGGTCGTGTCAACAACGCC
ATCGAGGTGCGCAGCCTA
BS09429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7146-PA | 2631 | CG7146-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2915 | CG7146-RA | 94..945 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18273759..18274232 | 559..86 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 18273448..18273697 | 809..560 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 18274283..18274353 | 87..17 | 355 | 100 | Minus |
| 3R | 32079331 | 3R | 18273331..18273390 | 868..809 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:18:42 has no hits.
BS09429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:17 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:58 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:55:11 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..944 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:13:50 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps39-RA | 94..944 | 17..867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:13:50 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18273332..18273389 | 810..867 | 100 | <- | Minus |
| 3R | 18273448..18273697 | 560..809 | 100 | <- | Minus |
| 3R | 18273759..18274231 | 87..559 | 100 | <- | Minus |
| 3R | 18274284..18274353 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:55:11 Download gff for
BS09429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14099054..14099111 | 810..867 | 100 | <- | Minus |
| arm_3R | 14099170..14099419 | 560..809 | 100 | <- | Minus |
| arm_3R | 14099481..14099953 | 87..559 | 100 | <- | Minus |
| arm_3R | 14100006..14100075 | 17..86 | 100 | | Minus |
BS09429.complete Sequence
2663 bp assembled on 2008-01-16
GenBank Submission: FJ636418
> BS09429.complete
GAAGTTATCAGTCGACATGCACCAGGCCTACAGTGTTCACTCGATCCTGA
AACAGGGCGTGCAGATAGAGTCAATTGCGGCATATGGCAACCATGTCATC
TTGGGCACCCGCAGCGGACAGCTGATCATGTACTCTGTGGACGAGGAGAC
GGGCGTGGACATGCGGATGTTCAACAAGAACTTCAGCCGGAAACCGATCA
CCCAAATGGAAGTGATTGCCTCGGAGAACCTGCTCTTCGTACTCACCGAC
TTACAGGTGCAGGTGTGCGACATTCGGCGGATTGAGAGCAACTTCGCTTT
CATGCACAGTGCGCCCGACACGAAGGGATGCACCCTGTTCACCATGGACG
TGGACACGCCGAAGTCCACAACCGGACGTGTGGCCACCGTCATACGGGTG
TGCTGCGCTATCCGGCGGCGTCTTGTGTTCTTCTTTTGGAAGGAGGACAA
GCTTAATTCCCTGGAATTGATCATCGAGCTCAGCGATGTGCCCAGGACAC
TGTGCTGGGTGGGCCATGCTGTCTGCGTGGGCTTCAAAGACGAATATGTT
GTTTACGATATATCAGGAAAAGCACCAAAGAAGCACAACCTCTTCCTTAC
CTCCTCTAGTATCAGCAGAGATCCCTGCATTTGCCTTATCCGGAACAACA
TGTTGGGCATCTCTAAGGACAGCTACCTCGTCGTAGTAGATCCGAGTCAG
TACAAAGAATCGGATGGAATCAATAACTCAACAGATGTCCGGCCAGCTGC
CATGGACAGCAATAGTTCCCTAACTCCTCTGCTCTGGTCAAGTCCGCTTT
TAGATCTGGTCTGGGATGAGCCATTCGCTGTGGGTCGTGTCAACAACGCC
ATCGAGGTGCGCAGCCTAGTGGGCAAGGACACCCTGGTCCAGACCATTCC
CGAGCTACAGAAGACGAAATTCCTGGTTCACGCCGACAAGGGAACCATCT
TTGCCGCCGCCACCTCCGAGCTTTGGTGCATTCGAATGGTGGAAATCCCT
ATCCAGCGTCAGCAGTTGCTACAGCAAAAGAAATTCCAACTGGCTATTGA
GCTGACGCAAATCTCCGATGAACCTGCCGCGGACCGAGCCCAAACCATTC
GCCAGATACACATGCTCTATGCGAAAGAGCTGTTTACCAATAAGGAGTTC
TCGGCGGCCATGAAGGAGTTTGAAAAGGCGGCTATAGATCCCTACGATGT
GATAAGACTGTTCCCAAACTTGGTGCCAGAACCAAAGCCCGGCACCGAAG
ATGTCACCGTGCCTACGTCCAGTACTCCGGCGCTTGAGGATAGCGACCTG
GAGAACGCCTACTTGGCACTGATCGAGTATCTGGCATGGGCCCGACAGCG
GGAGGTGGTCAAGCTGCGCGACACTAAAAGTAGTTCAAAGTCCCTGCTGG
AGATCATCGATACAACGTTGCTGAAGTGTTACCTGCAGACAAACGACTCT
CTGGTGGCACCACTGCTACGCCTAAACCAGTGCCACTTAGAGGAGTCGGA
AAAGACGTTGAAGAAGCACAACAAGATCTCTGAACTTATCATCCTCTACC
AGATGAAGGGCAAGCACAAGGAGGCCCTTAAACTGCTTCGAGAGCAGGCG
AGCATCGAAGGATCTGTGCTGCAGGGTCGCAAGCGTACCATACGCTATCT
TCAGGAGCTGGGTGGTGATCATCTGCCGCTGATCTTTGAGTTCGCTGACT
GGGTCTTAAACGATAATCCCGAGGAAGGCCTAACCATTTTCACCGACGAA
CTTATTGAAGTGGAATCCCTGCCGCGCGCCAAAGTTCTTGATTTTTTTAT
TAGCAAGCACAAAGCACTTGTCATTCCCTATTTGGAGCACGTAATCACTG
AATGGAAGGACGGCAACACCCTGCTCCACAATGTGCTCCTCAAGCAGTAT
CGCGAAAAGGTGCAACGGCTTCTTGCTCAGCAGGAAAAAGGAGAGGAAGT
TCCCGAACTCATTCCGATGCGAGCCAAGCTCTACAAGATGTTGGAGGAGT
CCAACGACTATTCGCCGGATCGCCTCCTAGAGGAATTTCCAACCAATATA
CTCTTGGAGGAGCGTGCCCTAATCCTGGGCAGGCTCAAAAAGCACGACAA
CGTCCTGTCCATCTATATTCATGTTCTCGGAGATGTGGCCAAGGCAACGG
CCTATGCGGAAGCCCATTACAAAGAGGACAAGCACATATTTCACACGCTC
ATTAAGTGCATATTAATACCACCAACTCAACCGCTCTATGATGGTGTGCC
CTTGCATCCGGATTTCTCGCAAGTGAATCGAGAGGTGGCCCTGGAAATAC
TTAACACCCACGCCACCAGAATCGATCCATTCGAGATCTTCGAGCACCTT
CCCGATGACATGCCCATGCCCCAGCTGGAGAAATACTTGGAGAAATCTAT
ACGTAAAATGATGGCCGACAAGCACGAGATGCAGATGATGTGCGGCTTCC
TGGAGGCAGAGTCCACGCGCCTGGAGAATGCCTTGGAGGAGCAGCGAAAC
ATTAGCTTCGAGTTAAACGAGTCTAGTGTGTGTTCCGAGTGCAAGAAGCG
TTTTCAAACCCAGTCCGCCTTCGTGCGCTATCCAAATGGGCACATCGTGC
ACCTATCCTGCCACGATCGGCTCGCCAGGGCGGCTGCTCAGCAATAAAAG
CTTTCTAGACCAT
BS09429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2631 | CG7146-PA | 1..2631 | 17..2647 | 13155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-RA | 2915 | CG7146-RA | 94..2724 | 17..2647 | 13155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18272203..18273087 | 1941..1057 | 4425 | 100 | Minus |
| 3R | 32079331 | 3R | 18273759..18274232 | 559..86 | 2370 | 100 | Minus |
| 3R | 32079331 | 3R | 18271746..18272149 | 2344..1941 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 18271380..18271684 | 2647..2343 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 18273448..18273697 | 809..560 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 18273142..18273390 | 1057..809 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 18274283..18274353 | 87..17 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:02:17 has no hits.
BS09429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:09 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 1..2631 | 17..2647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:03 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..2722 | 17..2645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:57 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..2722 | 17..2645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:09 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7146-RA | 94..2724 | 17..2647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:16 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps39-RA | 94..2722 | 17..2645 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:16 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18271382..18271682 | 2345..2645 | 100 | <- | Minus |
| 3R | 18271746..18272148 | 1942..2344 | 100 | <- | Minus |
| 3R | 18272203..18273086 | 1058..1941 | 100 | <- | Minus |
| 3R | 18273142..18273389 | 810..1057 | 100 | <- | Minus |
| 3R | 18273448..18273697 | 560..809 | 100 | <- | Minus |
| 3R | 18273759..18274231 | 87..559 | 100 | <- | Minus |
| 3R | 18274284..18274353 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:57 Download gff for
BS09429.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14098864..14099111 | 810..1057 | 100 | <- | Minus |
| arm_3R | 14097104..14097404 | 2345..2645 | 100 | <- | Minus |
| arm_3R | 14097468..14097870 | 1942..2344 | 100 | <- | Minus |
| arm_3R | 14097925..14098808 | 1058..1941 | 100 | <- | Minus |
| arm_3R | 14099170..14099419 | 560..809 | 100 | <- | Minus |
| arm_3R | 14099481..14099953 | 87..559 | 100 | <- | Minus |
| arm_3R | 14100006..14100075 | 17..86 | 100 | | Minus |
BS09429.pep Sequence
Translation from 16 to 2646
> BS09429.pep
MHQAYSVHSILKQGVQIESIAAYGNHVILGTRSGQLIMYSVDEETGVDMR
MFNKNFSRKPITQMEVIASENLLFVLTDLQVQVCDIRRIESNFAFMHSAP
DTKGCTLFTMDVDTPKSTTGRVATVIRVCCAIRRRLVFFFWKEDKLNSLE
LIIELSDVPRTLCWVGHAVCVGFKDEYVVYDISGKAPKKHNLFLTSSSIS
RDPCICLIRNNMLGISKDSYLVVVDPSQYKESDGINNSTDVRPAAMDSNS
SLTPLLWSSPLLDLVWDEPFAVGRVNNAIEVRSLVGKDTLVQTIPELQKT
KFLVHADKGTIFAAATSELWCIRMVEIPIQRQQLLQQKKFQLAIELTQIS
DEPAADRAQTIRQIHMLYAKELFTNKEFSAAMKEFEKAAIDPYDVIRLFP
NLVPEPKPGTEDVTVPTSSTPALEDSDLENAYLALIEYLAWARQREVVKL
RDTKSSSKSLLEIIDTTLLKCYLQTNDSLVAPLLRLNQCHLEESEKTLKK
HNKISELIILYQMKGKHKEALKLLREQASIEGSVLQGRKRTIRYLQELGG
DHLPLIFEFADWVLNDNPEEGLTIFTDELIEVESLPRAKVLDFFISKHKA
LVIPYLEHVITEWKDGNTLLHNVLLKQYREKVQRLLAQQEKGEEVPELIP
MRAKLYKMLEESNDYSPDRLLEEFPTNILLEERALILGRLKKHDNVLSIY
IHVLGDVAKATAYAEAHYKEDKHIFHTLIKCILIPPTQPLYDGVPLHPDF
SQVNREVALEILNTHATRIDPFEIFEHLPDDMPMPQLEKYLEKSIRKMMA
DKHEMQMMCGFLEAESTRLENALEEQRNISFELNESSVCSECKKRFQTQS
AFVRYPNGHIVHLSCHDRLARAAAQQ*
BS09429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps39-PA | 876 | CG7146-PA | 1..876 | 1..876 | 4510 | 100 | Plus |
