Clone Sequence Records
BS09431.3prime Sequence
935 bp (884 high quality bases) assembled on 2006-04-19
> BS09431.3prime
ATGGTCTAGAAAGCTTCTAAATCTGGCCGGGATCTTGCTGAAGCGGCTGC
TGCTGCTCTCCTTCCTCCTCTCCCTCCTCACCGTAGCAGCGCCGCTTAAA
ATCGCCAAAGAGATCTGCACGCGGCTGCAGACCTTGTTGAAGATGATCCA
TGCTCACCGTCTGCGTAGTGTTCCCGGTTTTGGTGAGCACTGTACATCCG
TGCTCTACCACCATGGTAAGTGAATAGAGCGTGGCCAGATTACTCATGCT
ATCGGTCTCATAAAGCTCTATATCCGGCAAACGGATCTGTGTCTGTTGCG
AATCCTGCAAAAATCGGGCGATGCGCTCATTGACGCTCATCTTGATGCTG
AATCCTGGACGCTCGCCATTGATGCGGCGACACCCTGCTCGTATCTCACG
TACTTCCTGTCCCTGGGCGTGTCCAGGAGGCGACGAGGAAAGAAACGGAT
TAGAGGTTTCGCCGGACATCTCACTCTCGATTTGGCGGGAAGCCGGCATG
GTGCCATCTGCATTTGTTTCCATCTCTGAGCAGGCATTCTGAATCTCGAT
AGGCTCGGAGACGCCGGCTGGTTGGAAGCGGGAAAGATCCTGAAGAGATT
CTGGAAGTTGGACTGGAGACTTCGAAGGCGGTTCCATACCCACCGCTCCC
GCTTCGGTGCCAGACATAAGAGTGTCATCTTCTCCAATTGTGTCATCCGA
GCGAATTTGAGGCAGTAGTGATTTTTTTGTAAGCTTCCTTTTTGGATCGT
ATCTGGCTCCGGGTCCGAATTCGTTTCCCGGCCAGTCGGTGAGTTCATCG
TCGCCCTCGCGATCGGTGTCGTGCCGTCGATGACCACCTACTTCCGCCTC
GCTATCGGTGGACGAGCTCAGGGAACTAGAGCTTAAGAAGTCATAAAGTT
CGCTACAATCCATTGACTGAGCTTGGAGCTGCAGC
BS09431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 2091 | CG4281-RA | 1173..2091 | 935..17 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 1324..2242 | 935..17 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2062946..2063708 | 173..935 | 3815 | 100 | Plus |
| X | 23542271 | X | 2062735..2062892 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:49:20 has no hits.
BS09431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:20 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1173..2091 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:02 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1173..2091 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:44:27 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1324..2242 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:27 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1324..2242 | 17..935 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:27 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2062735..2062891 | 17..173 | 100 | <- | Plus |
| X | 2062947..2063708 | 174..935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:44:27 Download gff for
BS09431.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1956768..1956924 | 17..173 | 100 | <- | Plus |
| arm_X | 1956980..1957741 | 174..935 | 100 | | Plus |
BS09431.5prime Sequence
913 bp (868 high quality bases) assembled on 2006-04-19
> BS09431.5prime
GAAGTTATCAGTCGACATGGATCAATTCTCGCACGATCTGACGTTGGCTC
TGGACCTGACGCTGATGGACAGGGCTAGTGGCGGCGTCGGTAGGTGGGGC
TCCCGCCGCAGGACACGTTCCACGGGCAATCTGCCCTGCGCCCCTCAGCC
CACGGAGGACTCCTCGAGCAGTCCCACGGATGCGCTAAACCAGGGGCACC
ATCACGGGCATCATGGCCACCACCACCATCACCACCACACAAGTGCCAAC
GTGGACGGACTGGACACACACAACCTTAAGTTGCCAGCCAGCGACTCTGA
CGAAAAGGCGGAGGCGATGCTGCCTCTGCGTCTGCCACTGACCTTGCCTA
TACGCATGGGTGCCCTGGAGTCCGACTCGCTTAACGAGACCACCTTCAGT
CCAGCCAGATTCTACAAGCCCAACTCGCGAAGGAAACGCAAGATCAAACG
GATGTCCATGGAGTTCGAGTTCAGCAAGGATACATCACACACCTTCACCG
AATCGCCACTGCAGCCCAGCCTGCTAAGTAGCAGCGGTTCTGCTACTGGA
ACCATACGCAAGCGATTGTTGAAAATTGACGCCACTGGACATCGCTCGCA
TTTGTTCTTCTGCGGCAAACGCAAGCGCTCAAACCGTGATCGCTACCATG
AGCAGGATTCGGTTAAGCTGTACGCCTTGCCACACTCACAAGTAGATGAC
CAGCACGTAGAGCAACCACAGCACCAGCAGCAGAGGATGCGCCCCCGCAG
CTACTCCTCCACATCGAAGCCACTCAGTGACCGCCTGCTTCCACTGAACA
AGGGACTGCTGTCGAAGATCAACCGAATGGCTGCCCAGGGACAGCAGACT
AAGCACACCCAAAAGACTGAGACAAAGGACAAGGACTTGAAATGTCATCG
TTCTGAAGGACCC
BS09431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 2091 | CG4281-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 151..1048 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2063984..2064491 | 913..406 | 2540 | 100 | Minus |
| X | 23542271 | X | 2064547..2064820 | 408..135 | 1370 | 100 | Minus |
| X | 23542271 | X | 2064874..2064992 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:17:40 has no hits.
BS09431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:21 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:04 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:51 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1048 | 16..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:26 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 151..1048 | 16..913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:26 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2063984..2064488 | 409..913 | 100 | <- | Minus |
| X | 2064547..2064820 | 135..408 | 100 | <- | Minus |
| X | 2064874..2064992 | 16..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:51 Download gff for
BS09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1958017..1958521 | 409..913 | 100 | <- | Minus |
| arm_X | 1958580..1958853 | 135..408 | 100 | <- | Minus |
| arm_X | 1958907..1959025 | 16..134 | 100 | | Minus |
BS09431.complete Sequence
2123 bp assembled on 2008-01-16
GenBank Submission: FJ636419
> BS09431.complete
GAAGTTATCAGTCGACATGGATCAATTCTCGCACGATCTGACGTTGGCTC
TGGACCTGACGCTGATGGACAGGGCTAGTGGCGGCGTCGGTAGGTGGGGC
TCCCGCCGCAGGACACGTTCCACGGGCAATCTGCCCTGCGCCCCTCAGCC
CACGGAGGACTCCTCGAGCAGTCCCACGGATGCGCTAAACCAGGGGCACC
ATCACGGGCATCATGGCCACCACCACCATCACCACCACACAAGTGCCAAC
GTGGACGGACTGGACACACACAACCTTAAGTTGCCAGCCAGCGACTCTGA
CGAAAAGGCGGAGGCGATGCTGCCTCTGCGTCTGCCACTGACCTTGCCTA
TACGCATGGGTGCCCTGGAGTCCGACTCGCTTAACGAGACCACCTTCAGT
CCAGCCAGATTCTACAAGCCCAACTCGCGAAGGAAACGCAAGATCAAACG
GATGTCCATGGAGTTCGAGTTCAGCAAGGATACATCACACACCTTCACCG
AATCGCCACTGCAGCCCAGCCTGCTAAGTAGCAGCGGTTCTGCTACTGGA
ACCATACGCAAGCGATTGTTGAAAATTGACGCCACTGGACATCGCTCGCA
TTTGTTCTTCTGCGGCAAACGCAAGCGCTCAAACCGTGATCGCTACCATG
AGCAGGATTCGGTTAAGCTGTACGCCTTGCCACACTCACAAGTAGATGAC
CAGCACGTAGAGCAACCACAGCACCAGCAGCAGAGGATGCGCCCCCGCAG
CTACTCCTCCACATCGAAGCCACTCAGTGACCGCCTGCTTCCACTGAACA
AGGGACTGCTGTCGAAGATCAACCGAATGGCTGCCCAGGGACAGCAGACT
AAGCACACCCAAAAGACTGAGACAAAGGACAAGGACTTGAAATGTCATCG
TTCTGAAGGACCCGAAGGAGTGAGCCTGGAGATGGAGGAGCTGCCCGATC
AAAAGGACGCGGTCCAGAAGCTACCTTTGCCAAGTGCTGATTTTACGACC
GCCAATTTTAACTCCATCAGCATGGACACCATTGTGCCTGTGACCGATAT
TGATGCCTTGTTATTGAGTACGCCACCAGCTGCTCCGCTGCTGCGCAAAA
AGGCGCAGGGGCAGGCGCCGGGACACAGCAGCAGTAGCTCATCCAAAACG
GAACGTCGCCGCCGCTTCCAAACGTTTCCACAGCCTCAGCTGCAGCTCCA
AGCTCAGTCAATGGATTGTAGCGAACTTTATGACTTCTTAAGCTCTAGTT
CCCTGAGCTCGTCCACCGATAGCGAGGCGGAAGTAGGTGGTCATCGACGG
CACGACACCGATCGCGAGGGCGACGATGAACTCACCGACTGGCCGGGAAA
CGAATTCGGACCCGGAGCCAGATACGATCCAAAAAGGAAGCTTACAAAAA
AATCACTACTGCCTCAAATTCGCTCGGATGACACAATTGGAGAAGATGAC
ACTCTTATGTCTGGCACCGAAGCGGGAGCGGTGGGTATGGAACCGCCTTC
GAAGTCTCCAGTCCAACTTCCAGAATCTCTTCAGGATCTTTCCCGCTTCC
AACCAGCCGGCGTCTCCGAGCCTATCGAGATTCAGAATGCCTGCTCAGAG
ATGGAAACAAATGCAGATGGCACCATGCCGGCTTCCCGCCAAATCGAGAG
TGAGATGTCCGGCGAAACCTCTAATCCGTTTCTTTCCTCGTCGCCTCCTG
GACACGCCCAGGGACAGGAAGTACGTGAGATACGAGCAGGGTGTCGCCGC
ATCAATGGCGAGCGTCCAGGATTCAGCATCAAGATGAGCGTCAATGAGCG
CATCGCCCGATTTTTGCAGGATTCGCAACAGACACAGATCCGTTTGCCGG
ATATAGAGCTTTATGAGACCGATAGCATGAGTAATCTGGCCACGCTCTAT
TCACTTACCATGGTGGTAGAGCACGGATGTACAGTGCTCACCAAAACCGG
GAACACTACGCAGACGGTGAGCATGGATCATCTTCAACAAGGTCTGCAGC
CGCGTGCAGATCTCTTTGGCGATTTTAAGCGGCGCTGCTACGGTGAGGAG
GGAGAGGAGGAAGGAGAGCAGCAGCAGCCGCTTCAGCAAGATCCCGGCCA
GATTTAGAAGCTTTCTAGACCAT
BS09431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2091 | CG4281-PA | 1..2091 | 17..2107 | 10455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-RA | 2664 | CG4281-RA | 151..2242 | 16..2107 | 10460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2062946..2064491 | 1951..406 | 7730 | 100 | Minus |
| X | 23542271 | X | 2064547..2064820 | 408..135 | 1370 | 100 | Minus |
| X | 23542271 | X | 2062735..2062892 | 2107..1950 | 790 | 100 | Minus |
| X | 23542271 | X | 2064874..2064992 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:11 has no hits.
BS09431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:10 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 1..2091 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:54 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 146..2236 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:13 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 152..2242 | 17..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:10 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 145..2236 | 16..2107 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:20 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4281-RA | 152..2242 | 17..2107 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:20 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2062735..2062891 | 1951..2107 | 100 | <- | Minus |
| X | 2062947..2064488 | 409..1950 | 100 | <- | Minus |
| X | 2064547..2064820 | 135..408 | 100 | <- | Minus |
| X | 2064874..2064991 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:13 Download gff for
BS09431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1956768..1956924 | 1951..2107 | 100 | <- | Minus |
| arm_X | 1956980..1958521 | 409..1950 | 100 | <- | Minus |
| arm_X | 1958580..1958853 | 135..408 | 100 | <- | Minus |
| arm_X | 1958907..1959024 | 17..134 | 100 | | Minus |
BS09431.pep Sequence
Translation from 16 to 2106
> BS09431.pep
MDQFSHDLTLALDLTLMDRASGGVGRWGSRRRTRSTGNLPCAPQPTEDSS
SSPTDALNQGHHHGHHGHHHHHHHTSANVDGLDTHNLKLPASDSDEKAEA
MLPLRLPLTLPIRMGALESDSLNETTFSPARFYKPNSRRKRKIKRMSMEF
EFSKDTSHTFTESPLQPSLLSSSGSATGTIRKRLLKIDATGHRSHLFFCG
KRKRSNRDRYHEQDSVKLYALPHSQVDDQHVEQPQHQQQRMRPRSYSSTS
KPLSDRLLPLNKGLLSKINRMAAQGQQTKHTQKTETKDKDLKCHRSEGPE
GVSLEMEELPDQKDAVQKLPLPSADFTTANFNSISMDTIVPVTDIDALLL
STPPAAPLLRKKAQGQAPGHSSSSSSKTERRRRFQTFPQPQLQLQAQSMD
CSELYDFLSSSSLSSSTDSEAEVGGHRRHDTDREGDDELTDWPGNEFGPG
ARYDPKRKLTKKSLLPQIRSDDTIGEDDTLMSGTEAGAVGMEPPSKSPVQ
LPESLQDLSRFQPAGVSEPIEIQNACSEMETNADGTMPASRQIESEMSGE
TSNPFLSSSPPGHAQGQEVREIRAGCRRINGERPGFSIKMSVNERIARFL
QDSQQTQIRLPDIELYETDSMSNLATLYSLTMVVEHGCTVLTKTGNTTQT
VSMDHLQQGLQPRADLFGDFKRRCYGEEGEEEGEQQQPLQQDPGQI*
BS09431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4281-PA | 696 | CG4281-PA | 1..696 | 1..696 | 3635 | 100 | Plus |
