Clone Sequence Records
BS09434.complete Sequence
2474 bp assembled on 2009-12-07
GenBank Submission: KX804674
> BS09434.complete
GAAGTTATCAGTCGTCATGTCTGGTGGTCCATCCATAACGATAAAAAGCC
AACCAATCGATGGTAACAACACGGGCAACGCTGCGGCGCAACAGCAGCAG
CAGGCAGCGAATGGCGCAGCAACCGCTGGTGCATCTGGAGCCGCTGGCAG
CGCCCAGAATCCAGGACACGGAGGAGCTGCGTCCGGCGCTGGCAGTGTGC
CGGCAGAGGGAACGCGCCAGAACAGCCTACAGCGCATTCAGCAGCGAAAG
CAAAAGGTCTTCAATCTGCCCGTGCCACAGAAACTGGCCAAATTGTCGAT
GTATTCCGCCTGCCAGTCTGAGGGATGCCGTTGCACCGGCTGGAAGACAC
CGCAGGAAAATCGCCACCGTGACGTCGAGTCCTCCTACTGTCCGGAGTTC
AACGAGGAGTGCCGCAACACCAGCTGTCGCCATTCGCTGAGATCGCACAT
AGCCCATCTGGACAATATATCCAGTTCCAGCATGAACGAGCTACTGGGCG
CCATTATAGACATGGAGAACCTATTCATGTCCATGCAGCGCGTCGAGGAC
GAGGACACCAAGAAGGTGTACCAGTACCTCTTCCGTTTGCTGCGCCAGTG
CGTCCTCACGCGCCAGCAGGCGGTCATCCGGGGTCCTCTCGGCGATCCAC
CATTCGAGACGCCGTGCATCACCAAGGCTGTGCTCTCGTTGGTCTTCTAC
AAGTACAATCACCTGAGCACGCCTGAACTCCAAACCATGACCGAGGTGGC
CAAGACGTTCTTGAACTTTCTGAACCACTACAACTTTGAATCGCCGTCGA
CCAGGAGAGGAGATCTCACCCACGAGGATGCCTCTAACTACAAAATCAAC
TACACCAGGTGGTTGGTGTTCTGCCACGTGCCCGCCTTCTGTAACTCCCT
GCGCCAATGTGAAACGTCCCTAGTGTTTGGACGAACGCTCCTGCGCACCG
TTTTCCAGTGCATGTCGCAGCAGCTGAAAAAGAAGTGCATCTCCGAGCGG
GATCGCTTTCCCGAGGACAAGCGTTCGATCATCACGCTGATGCCGAAGTT
TTTGGAAACGCTTCGCGCCGAATTGCTCAAGGATGATTCGCCCATCTGGG
ATACCAGCTACCGCCCGTCAAATTCCTTTGTCATCCAGCAGAGAAAGCGT
AACCAGGAGGTGGCAAATGTACCCATTGGTCCCAGTGCAGCAAGCATTGG
TGGAAACAAGAGGACCAGTGTGGGTGAACCGCTCCACAAGCGAATCAAAA
AGGAGCCCACCGATCGTCCAAGCAGTGAGAATTTGGATGACCTGCCTGCG
GATGTAGTAATGCGCGCCATGAAATCGGTGTCCGAGTCGAAGACCACCAA
CAAAGCGGAAATTCTCTTTCCGGTTAATGTGTCGCGGGATGAGAACGTCA
AGGCGGAGGAGCAGAAGCGAGCCATTGAGTTCCATGTGGTGGGCAATTCG
CTGACCAAACCGGTGGACAAGCAGACTGTTTTGTGGCTACTGGGCCTGCA
GCTCGTATTTGCCTATCAGCTACCCGAGATGCCGCGCGAGTACATCAGCC
AGTTGGTTTTCGACACCAAGCACAAAACACTGGCGCTCATCAAGGAAAAC
CAACCCATCGGCGGCATCTGTTTCCGCCCGTTTCCGTCGCAAGGCTTCAC
CGAGATCGTTTTCTGCGCGGTCACCATGTCGGAACAAGTTAAGGGCTATG
GCACGCACTTGATGAACCACTTGAAGGACTACAGCATACAGAGGGGTATC
AAGCATCTGCTCACATTCGCCGATTGCGATGCCATCGGGTACTTCAAGAA
GCAGGGTTTCTCCAAGGACATCAAATTGGCGCGACCAGTTTATGCGGGCT
ACATCAAGGAGTACGATAGTGCTACTCTCATGCACTGCGAGCTGCATCCA
AGCATTGTGAACACGCAGTTCATAGCTGTAATTCGCAGTCAGAGCGAGAT
TCTGAAGGAGCTGATCGCACAGCGCCACAACGAGGTGCAGAAAGTAAGAC
CCGGCTTGACTTGCTTCAAGGAGGGCCTGCCCGTGATTCCCGTGGAATCG
ATTCCTGGTCTGCGGGAGATCGGTTGGAAGCCGCAAAATCGTCCGGCGCG
CTCATCGCGACCCCTCGAGGAATCCACCGATCCGGAGAAGCTGGCCACGT
CCTTTGCATCCGTGCTGCAATCCGTGCGCCAGCACACCACCGCCTGGCCC
TTCCTGCGCCCGGTGACCGCGGCCGAAGTTCCGGACTACTACGATCACAT
TAAATATCCCATGGACCTGAAGACCATGGGCGAGCGCCTGAAGAAGGGTT
ACTACCAAACGCGCCGCCTGTTCATGGCGGACATGGCGCGCATTTTCTCC
AACTGTCGGTTCTACAATTCGCCCGACACCGAGTATTATCGGTGTGCCAA
CTCCCTGGAGCGCTACTTCCAGACCAAGATGCGCGAGCTGGGGCTGTGGG
ACAAATGAAAGCATTCTAGACCAT
BS09434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2442 | CG4107-PA | 1..2442 | 17..2458 | 12210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2770 | CG4107-RA | 112..2553 | 17..2458 | 12210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12522645..12523903 | 1275..17 | 6295 | 100 | Minus |
| 3L | 28110227 | 3L | 12521938..12522594 | 1928..1272 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 12521346..12521876 | 2458..1928 | 2655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:49 has no hits.
BS09434.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:21 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcaf-RA | 99..2539 | 17..2457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:31 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..2552 | 17..2457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:16 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcaf-RA | 99..2539 | 17..2457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:19 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..2552 | 17..2457 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:19 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12521347..12521875 | 1929..2457 | 100 | <- | Minus |
| 3L | 12521938..12522590 | 1276..1928 | 100 | <- | Minus |
| 3L | 12522645..12523903 | 17..1275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:31 Download gff for
BS09434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12514447..12514975 | 1929..2457 | 100 | <- | Minus |
| arm_3L | 12515038..12515690 | 1276..1928 | 100 | <- | Minus |
| arm_3L | 12515745..12517003 | 17..1275 | 100 | | Minus |
BS09434.3prime Sequence
849 bp (810 high quality bases) assembled on 2006-04-19
> BS09434.3prime
ATGGTCTAGAATGCTTTCATTTGTCCCACAGCCCCAGCTCGCGCATCTTG
GTCTGGAAGTAGCGCTCCAGGGAGTTGGCACACCGATAATACTCGGTGTC
GGGCGAATTGTAGAACCGACAGTTGGAGAAAATGCGCGCCATGTCCGCCA
TGAACAGGCGGCGCGTTTGGTAGTAACCCTTCTTCAGGCGCTCGCCCATG
GTCTTCAGGTCCATGGGATATTTAATGTGATCGTAGTAGTCCGGAACTTC
GGCCGCGGTCACCGGGCGCAGGAAGGGCCAGGCGGTGGTGTGCTGGCGCA
CGGATTGCAGCACGGATGCAAAGGACGTGGCCAGCTTCTCCGGATCGGTG
GATTCCTCGAGGGGTCGCGATGAGCGCGCCGGACGATTTTGCGGCTTCCA
ACCGATCTCCCGCAGACCAGGAATCGATTCCACGGGAATCACGGGCAGGC
CCTCCTTGAAGCAAGTCAAGCCGGGTCTTACTTTCTGCACCTCGTTGTGG
CGCTGTGCGATCAGCTCCTTCAGAATCTCGCTCTGACTGCGAATTACAGC
TATGAACTGCGTGTTCACAATGCTTGGATGCAGCTCGCAGTGCATGAGAG
TAGCACTATCGTACTCCTTGATGTAGCCCGCATAAACTGGTCGCGCCAAT
TTGATGTCCTTGGAGAAACCCTGCTTCTTGAAGTACCCGATGGCATCGCA
ATCGGCGAATGTGAGCAGATGCTTGATACCCCTCTGTATGCTGTAGTCCT
TCAAGTGGTTCATCAAGTGCGTGCCATAGCCCTTAACTTGTTCCGACATG
GTGACCGCGCAGAANACGATCTCGGTGAAGCCTTGCGACGGAAACGGGC
BS09434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4107-PA | 2442 | Pcaf-RA | 1610..2442 | 849..17 | 4146 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2770 | CG4107-RA | 1721..2553 | 849..17 | 4154 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12521346..12521876 | 17..547 | 2655 | 100 | Plus |
| 3L | 28110227 | 3L | 12521938..12522240 | 547..849 | 1504 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:50:22 has no hits.
BS09434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:27 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcaf-PA | 1610..2442 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:11 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4107-PA | 1610..2442 | 17..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:05 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 1721..2557 | 12..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:17 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 1721..2557 | 12..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:17 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12521342..12521875 | 12..546 | 99 | <- | Plus |
| 3L | 12521938..12522240 | 547..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:05 Download gff for
BS09434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12514442..12514975 | 12..546 | 99 | <- | Plus |
| arm_3L | 12515038..12515340 | 547..849 | 99 | | Plus |
BS09434.5prime Sequence
806 bp (804 high quality bases) assembled on 2006-04-19
> BS09434.5prime
GAAGTTATCAGTCGTCATGTCTGGTGGTCCATCCATAACGATAAAAAGCC
AACCAATCGATGGTAACAACACGGGCAACGCTGCGGCGCAACAGCAGCAG
CAGGCAGCGAATGGCGCAGCAACCGCTGGTGCATCTGGAGCCGCTGGCAG
CGCCCAGAATCCAGGACACGGAGGAGCTGCGTCCGGCGCTGGCAGTGTGC
CGGCAGAGGGAACGCGCCAGAACAGCCTACAGCGCATTCAGCAGCGAAAG
CAAAAGGTCTTCAATCTGCCCGTGCCACAGAAACTGGCCAAATTGTCGAT
GTATTCCGCCTGCCAGTCTGAGGGATGCCGTTGCACCGGCTGGAAGACAC
CGCAGGAAAATCGCCACCGTGACGTCGAGTCCTCCTACTGTCCGGAGTTC
AACGAGGAGTGCCGCAACACCAGCTGTCGCCATTCGCTGAGATCGCACAT
AGCCCATCTGGACAATATATCCAGTTCCAGCATGAACGAGCTACTGGGCG
CCATTATAGACATGGAGAACCTATTCATGTCCATGCAGCGCGTCGAGGAC
GAGGACACCAAGAAGGTGTACCAGTACCTCTTCCGTTTGCTGCGCCAGTG
CGTCCTCACGCGCCAGCAGGCGGTCATCCGGGGTCCTCTCGGCGATCCAC
CATTCGAGACGCCGTGCATCACCAAGGCTGTGCTCTCGTTGGTCTTCTAC
AAGTACAATCACCTGAGCACGCCTGAACTCCAAACCATGACCGAGGTGGC
CAAGACGTTCTTGAACTTTCTGAACCACTACAACTTTGAATCGCCGTCGA
CCAGGA
BS09434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4107-PA | 2442 | Pcaf-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2770 | CG4107-RA | 112..901 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12523114..12523903 | 806..17 | 3950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:05:45 has no hits.
BS09434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:28 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcaf-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:12 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4107-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:30 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..900 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:04 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..900 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:04 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12523115..12523903 | 17..805 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:30 Download gff for
BS09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12516215..12517003 | 17..805 | 100 | | Minus |
BS09434.pep Sequence
Translation from 16 to 2457
> BS09434.pep
MSGGPSITIKSQPIDGNNTGNAAAQQQQQAANGAATAGASGAAGSAQNPG
HGGAASGAGSVPAEGTRQNSLQRIQQRKQKVFNLPVPQKLAKLSMYSACQ
SEGCRCTGWKTPQENRHRDVESSYCPEFNEECRNTSCRHSLRSHIAHLDN
ISSSSMNELLGAIIDMENLFMSMQRVEDEDTKKVYQYLFRLLRQCVLTRQ
QAVIRGPLGDPPFETPCITKAVLSLVFYKYNHLSTPELQTMTEVAKTFLN
FLNHYNFESPSTRRGDLTHEDASNYKINYTRWLVFCHVPAFCNSLRQCET
SLVFGRTLLRTVFQCMSQQLKKKCISERDRFPEDKRSIITLMPKFLETLR
AELLKDDSPIWDTSYRPSNSFVIQQRKRNQEVANVPIGPSAASIGGNKRT
SVGEPLHKRIKKEPTDRPSSENLDDLPADVVMRAMKSVSESKTTNKAEIL
FPVNVSRDENVKAEEQKRAIEFHVVGNSLTKPVDKQTVLWLLGLQLVFAY
QLPEMPREYISQLVFDTKHKTLALIKENQPIGGICFRPFPSQGFTEIVFC
AVTMSEQVKGYGTHLMNHLKDYSIQRGIKHLLTFADCDAIGYFKKQGFSK
DIKLARPVYAGYIKEYDSATLMHCELHPSIVNTQFIAVIRSQSEILKELI
AQRHNEVQKVRPGLTCFKEGLPVIPVESIPGLREIGWKPQNRPARSSRPL
EESTDPEKLATSFASVLQSVRQHTTAWPFLRPVTAAEVPDYYDHIKYPMD
LKTMGERLKKGYYQTRRLFMADMARIFSNCRFYNSPDTEYYRCANSLERY
FQTKMRELGLWDK*
BS09434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-PA | 813 | CG4107-PA | 1..813 | 1..813 | 4272 | 100 | Plus |
| E(bx)-PB | 2649 | CG32346-PB | 2539..2638 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PI | 2668 | CG32346-PI | 2558..2657 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PJ | 2669 | CG32346-PJ | 2559..2658 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PE | 2669 | CG32346-PE | 2559..2658 | 703..806 | 237 | 42.3 | Plus |
