Clone BS09437 Report

Search the DGRC for BS09437

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG12162-RA
Protein status:BS09437.pep: full length peptide match
Sequenced Size:1265

Clone Sequence Records

BS09437.3prime Sequence

842 bp (841 high quality bases) assembled on 2006-04-19

> BS09437.3prime
ATGGTCTAGAATGCTTTTAATCGCTATCGTCGCGCTTTTTATCGTGGGCA
CTGGGCGTGGCCGGTGTGGGCGTCCCTAGGTCGTCCGGCTTGCTCTCCAG
TGAGAAGGGCGGAATCTTGCAATCGAAGGAGTATCCGTCTTCGCGCTCCA
GCCGGAAGGTGCCCCACATATGGCCGCTGGGAGCCTGCAGGCTCACATGG
CTGCTGTACTGAAAGGCGGGCAGCCGGGGGCTCAGAATGGGCTCCTGGCC
CACCACTCCTCTTCCGCGCACCGTCTCCAGGGTTCCAGACAGTGAGAAAA
TGCGCCAGTGGCGCTCGCGCAGCTGCACGCTCAGCTCGCCGAGGTTCTCC
AGTCGGATGCAGTAGCGCCACCAGTAGACCGAACTAGCAGGCGTCTCCCG
GCAACCCATGTAGAAGGGAATCACGGTAATGCGCACGTTCTCCGTGGTCT
CCTTGTGTACATCGCTCATGTCCAGCCAGGGATGGTTCTTCTCCTGCCAC
GCCTTCAGAGTGTCCTGGCCCACAAATGGCGGGTCCGCGTCCGGAGCGTG
CGTAAGGAACTTATCGAACAGCTCGTGCTGCAGCGGACTCTTCTCGCTGG
AGCTGTAAGGCATGATGTCCTCGTGGGCCACGTAGTCCAGCCCGGGGATG
GCGTAGAGGCTGCGGTTGGAGTCCTGGTTGCCGAGAAAGGTGACCGCCTC
GGTCTGGGCGCGAATGTACGGGCAATCGCGGGTGTCTATGAGCACCTGAT
AAAAGGTTTGCACCTTGCCCTTGACCTCTTTGGGATCCACTTGGGAGGTG
GTACCCAGGTTTGTGGTGCCTGTACTTTCAGCCGCGTTCGTC

BS09437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 1233 CG12162-RA 408..1233 842..17 4130 100 Minus
CG12162-PB 1296 CG12162-RB 471..1296 842..17 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RB 1639 CG12162-RB 687..1512 842..17 4130 100 Minus
CG12162-RA 1595 CG12162-RA 670..1495 842..17 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5469085..5469439 371..17 1775 100 Minus
3R 32079331 3R 5468689..5469030 712..371 1710 100 Minus
3R 32079331 3R 5468500..5468629 842..713 650 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:14:51 has no hits.

BS09437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:33 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 408..1233 17..842 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:20 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PB 471..1296 17..842 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:54 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 670..1498 14..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:59 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 670..1498 14..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:59 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5468689..5469030 371..712 100 -> Minus
3R 5469086..5469442 14..370 99   Minus
3R 5468500..5468629 713..842 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:54 Download gff for BS09437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1294222..1294351 713..842 100 -> Minus
arm_3R 1294411..1294752 371..712 100 -> Minus
arm_3R 1294808..1295164 14..370 99   Minus

BS09437.5prime Sequence

908 bp (868 high quality bases) assembled on 2006-04-19

> BS09437.5prime
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCA

BS09437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 1233 CG12162-RA 1..892 17..908 4460 100 Plus
CG12162-PB 1296 CG12162-RB 174..955 127..908 3910 100 Plus
CG12162-PB 1296 CG12162-RB 11..120 17..126 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1595 CG12162-RA 263..1154 17..908 4460 100 Plus
CG12162-RB 1639 CG12162-RB 390..1171 127..908 3910 100 Plus
CG12162-RB 1639 CG12162-RB 227..336 17..126 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5468203..5468629 127..553 2135 100 Plus
3R 32079331 3R 5468689..5469030 554..895 1710 100 Plus
3R 32079331 3R 5468040..5468149 17..126 550 100 Plus
Blast to na_te.dros performed on 2015-02-04 02:18:58 has no hits.

BS09437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:34 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:22 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-PA 1..891 17..907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:49:13 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 259..1153 13..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:41 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 259..1153 13..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:41 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5468036..5468149 13..126 98 -> Plus
3R 5468203..5468629 127..553 100 -> Plus
3R 5468689..5469030 554..895 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:49:13 Download gff for BS09437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1293758..1293871 13..126 98 -> Plus
arm_3R 1293925..1294351 127..553 100 -> Plus
arm_3R 1294411..1294752 554..895 100 -> Plus

BS09437.complete Sequence

1265 bp assembled on 2008-08-15

GenBank Submission: FJ636420

> BS09437.complete
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGCGCCACTGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGGTGCGC
GGAAGAGGAGTGGTGGGCCAGGAGCCCATTCTGAGCCCCCGGCTGCCCGC
CTTTCAGTACAGCAGCCATGTGAGCCTGCAGGCTCCCAGCGGCCATATGT
GGGGCACCTTCCGGCTGGAGCGCGAAGACGGATACTCCTTCGATTGCAAG
ATTCCGCCCTTCTCACTGGAGAGCAAGCCGGACGACCTAGGGACGCCCAC
ACCGGCCACGCCCAGTGCCCACGATAAAAAGCGCGACGATAGCGATTAAA
AGCATTCTAGACCAT

BS09437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1233 CG12162-PA 1..1233 17..1249 6165 100 Plus
CG12162-RB 1296 CG12162-PB 174..1296 127..1249 5615 100 Plus
CG12162-RB 1296 CG12162-PB 11..120 17..126 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-RA 1595 CG12162-RA 263..1495 17..1249 6165 100 Plus
CG12162-RB 1639 CG12162-RB 390..1512 127..1249 5615 100 Plus
CG12162-RB 1639 CG12162-RB 227..336 17..126 550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5468203..5468629 127..553 2135 100 Plus
3R 32079331 3R 5469085..5469439 895..1249 1775 100 Plus
3R 32079331 3R 5468689..5469030 554..895 1710 100 Plus
3R 32079331 3R 5468040..5468149 17..126 550 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:58:20 has no hits.

BS09437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:11 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 244..1483 13..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:01 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 263..1493 17..1247 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:07 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 248..1478 17..1247 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:00 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
CG12162-RA 263..1493 17..1247 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:00 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5469086..5469437 896..1247 100   Plus
3R 5468040..5468149 17..126 100 -> Plus
3R 5468203..5468629 127..553 100 -> Plus
3R 5468689..5469030 554..895 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:01 Download gff for BS09437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1293762..1293871 17..126 100 -> Plus
arm_3R 1293925..1294351 127..553 100 -> Plus
arm_3R 1294411..1294752 554..895 100 -> Plus
arm_3R 1294808..1295159 896..1247 100   Plus

BS09437.pep Sequence

Translation from 16 to 1248

> BS09437.pep
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSD*

BS09437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12162-PA 410 CG12162-PA 1..410 1..410 2180 100 Plus
CG12162-PB 431 CG12162-PB 58..431 37..410 1987 99.7 Plus