Clone Sequence Records
BS09437.3prime Sequence
842 bp (841 high quality bases) assembled on 2006-04-19
> BS09437.3prime
ATGGTCTAGAATGCTTTTAATCGCTATCGTCGCGCTTTTTATCGTGGGCA
CTGGGCGTGGCCGGTGTGGGCGTCCCTAGGTCGTCCGGCTTGCTCTCCAG
TGAGAAGGGCGGAATCTTGCAATCGAAGGAGTATCCGTCTTCGCGCTCCA
GCCGGAAGGTGCCCCACATATGGCCGCTGGGAGCCTGCAGGCTCACATGG
CTGCTGTACTGAAAGGCGGGCAGCCGGGGGCTCAGAATGGGCTCCTGGCC
CACCACTCCTCTTCCGCGCACCGTCTCCAGGGTTCCAGACAGTGAGAAAA
TGCGCCAGTGGCGCTCGCGCAGCTGCACGCTCAGCTCGCCGAGGTTCTCC
AGTCGGATGCAGTAGCGCCACCAGTAGACCGAACTAGCAGGCGTCTCCCG
GCAACCCATGTAGAAGGGAATCACGGTAATGCGCACGTTCTCCGTGGTCT
CCTTGTGTACATCGCTCATGTCCAGCCAGGGATGGTTCTTCTCCTGCCAC
GCCTTCAGAGTGTCCTGGCCCACAAATGGCGGGTCCGCGTCCGGAGCGTG
CGTAAGGAACTTATCGAACAGCTCGTGCTGCAGCGGACTCTTCTCGCTGG
AGCTGTAAGGCATGATGTCCTCGTGGGCCACGTAGTCCAGCCCGGGGATG
GCGTAGAGGCTGCGGTTGGAGTCCTGGTTGCCGAGAAAGGTGACCGCCTC
GGTCTGGGCGCGAATGTACGGGCAATCGCGGGTGTCTATGAGCACCTGAT
AAAAGGTTTGCACCTTGCCCTTGACCTCTTTGGGATCCACTTGGGAGGTG
GTACCCAGGTTTGTGGTGCCTGTACTTTCAGCCGCGTTCGTC
BS09437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 1233 | CG12162-RA | 408..1233 | 842..17 | 4130 | 100 | Minus |
CG12162-PB | 1296 | CG12162-RB | 471..1296 | 842..17 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RB | 1639 | CG12162-RB | 687..1512 | 842..17 | 4130 | 100 | Minus |
CG12162-RA | 1595 | CG12162-RA | 670..1495 | 842..17 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5469085..5469439 | 371..17 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 5468689..5469030 | 712..371 | 1710 | 100 | Minus |
3R | 32079331 | 3R | 5468500..5468629 | 842..713 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:14:51 has no hits.
BS09437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:33 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 408..1233 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:20 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PB | 471..1296 | 17..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:54 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 670..1498 | 14..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:59 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 670..1498 | 14..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:59 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5468689..5469030 | 371..712 | 100 | -> | Minus |
3R | 5469086..5469442 | 14..370 | 99 | | Minus |
3R | 5468500..5468629 | 713..842 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:54 Download gff for
BS09437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1294222..1294351 | 713..842 | 100 | -> | Minus |
arm_3R | 1294411..1294752 | 371..712 | 100 | -> | Minus |
arm_3R | 1294808..1295164 | 14..370 | 99 | | Minus |
BS09437.5prime Sequence
908 bp (868 high quality bases) assembled on 2006-04-19
> BS09437.5prime
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCA
BS09437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 1233 | CG12162-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
CG12162-PB | 1296 | CG12162-RB | 174..955 | 127..908 | 3910 | 100 | Plus |
CG12162-PB | 1296 | CG12162-RB | 11..120 | 17..126 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1595 | CG12162-RA | 263..1154 | 17..908 | 4460 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 390..1171 | 127..908 | 3910 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 227..336 | 17..126 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5468203..5468629 | 127..553 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 5468689..5469030 | 554..895 | 1710 | 100 | Plus |
3R | 32079331 | 3R | 5468040..5468149 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:18:58 has no hits.
BS09437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:34 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:22 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:49:13 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 259..1153 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:41 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 259..1153 | 13..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:41 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5468036..5468149 | 13..126 | 98 | -> | Plus |
3R | 5468203..5468629 | 127..553 | 100 | -> | Plus |
3R | 5468689..5469030 | 554..895 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:49:13 Download gff for
BS09437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1293758..1293871 | 13..126 | 98 | -> | Plus |
arm_3R | 1293925..1294351 | 127..553 | 100 | -> | Plus |
arm_3R | 1294411..1294752 | 554..895 | 100 | -> | Plus |
BS09437.complete Sequence
1265 bp assembled on 2008-08-15
GenBank Submission: FJ636420
> BS09437.complete
GAAGTTATCAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACC
AGCGATGTCCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTC
AAGAAGCAGGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGT
GGATGCCCGCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCA
TCTTCGGCTACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTAC
GACCGGGATCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAG
CGCCAATCCGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGA
AGGCCAACACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGAT
GCCCCCACCTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCAC
CACAAACCTGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCA
AGGTGCAAACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTAC
ATTCGCGCCCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAA
CCGCAGCCTCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACA
TCATGCCTTACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTC
GATAAGTTCCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCA
GGACACTCTGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGA
GCGATGTACACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCC
TTCTACATGGGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCG
CTACTGCATCCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCG
AGCGCCACTGGCGCATTTTCTCACTGTCTGGAACCCTGGAGACGGTGCGC
GGAAGAGGAGTGGTGGGCCAGGAGCCCATTCTGAGCCCCCGGCTGCCCGC
CTTTCAGTACAGCAGCCATGTGAGCCTGCAGGCTCCCAGCGGCCATATGT
GGGGCACCTTCCGGCTGGAGCGCGAAGACGGATACTCCTTCGATTGCAAG
ATTCCGCCCTTCTCACTGGAGAGCAAGCCGGACGACCTAGGGACGCCCAC
ACCGGCCACGCCCAGTGCCCACGATAAAAAGCGCGACGATAGCGATTAAA
AGCATTCTAGACCAT
BS09437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1233 | CG12162-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG12162-RB | 1296 | CG12162-PB | 174..1296 | 127..1249 | 5615 | 100 | Plus |
CG12162-RB | 1296 | CG12162-PB | 11..120 | 17..126 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-RA | 1595 | CG12162-RA | 263..1495 | 17..1249 | 6165 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 390..1512 | 127..1249 | 5615 | 100 | Plus |
CG12162-RB | 1639 | CG12162-RB | 227..336 | 17..126 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5468203..5468629 | 127..553 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 5469085..5469439 | 895..1249 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 5468689..5469030 | 554..895 | 1710 | 100 | Plus |
3R | 32079331 | 3R | 5468040..5468149 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:58:20 has no hits.
BS09437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:11 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 244..1483 | 13..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:01 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 263..1493 | 17..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:07 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 248..1478 | 17..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:00 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12162-RA | 263..1493 | 17..1247 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:00 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5469086..5469437 | 896..1247 | 100 | | Plus |
3R | 5468040..5468149 | 17..126 | 100 | -> | Plus |
3R | 5468203..5468629 | 127..553 | 100 | -> | Plus |
3R | 5468689..5469030 | 554..895 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:01 Download gff for
BS09437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1293762..1293871 | 17..126 | 100 | -> | Plus |
arm_3R | 1293925..1294351 | 127..553 | 100 | -> | Plus |
arm_3R | 1294411..1294752 | 554..895 | 100 | -> | Plus |
arm_3R | 1294808..1295159 | 896..1247 | 100 | | Plus |
BS09437.pep Sequence
Translation from 16 to 1248
> BS09437.pep
MSLLVQVFKWDQRCPMLHRVDILLRRGVKKQAVYPTKLAEVGRLVDARDD
RYETGQLFLHRIFGYRGVILFPWTARVYDRDLHNPGKISATTTTSANPTQ
QNRTKEASLRVKANTSASPTAATAQSADAPTSTAFETNAAESTGTTNLGT
TSQVDPKEVKGKVQTFYQVLIDTRDCPYIRAQTEAVTFLGNQDSNRSLYA
IPGLDYVAHEDIMPYSSSEKSPLQHELFDKFLTHAPDADPPFVGQDTLKA
WQEKNHPWLDMSDVHKETTENVRITVIPFYMGCRETPASSVYWWRYCIRL
ENLGELSVQLRERHWRIFSLSGTLETVRGRGVVGQEPILSPRLPAFQYSS
HVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDDLGTPTPATPS
AHDKKRDDSD*
BS09437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12162-PA | 410 | CG12162-PA | 1..410 | 1..410 | 2180 | 100 | Plus |
CG12162-PB | 431 | CG12162-PB | 58..431 | 37..410 | 1987 | 99.7 | Plus |