Clone BS09441 Report

Search the DGRC for BS09441

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptPhm-RA
Protein status:BS09441.pep: full length peptide match
Sequenced Size:1130

Clone Sequence Records

BS09441.3prime Sequence

829 bp (828 high quality bases) assembled on 2006-04-19

> BS09441.3prime
ATGGTCTTGAAAGCTTTTACAAGGTGCTCGCCTCGATATGTGGGATATTG
TGTAGGCCGGAGTCGGGATTGGACCAGAAGTAGTAGGGGGCGCCCTGGCT
GAAGCAGAACTTCATGTTTAGTGTCTCCCCGTGATCCACGTAGTACATGA
GATAGAAGTTGCACATCTCGTCCTCGTTCGTGGGACCTATTTTGGTAGTC
CGATGGCGAGTGCTCTGCATAGTACACCTCACGGCGATCTTATCTCCCTC
GATTATGGGGTCTGTGTTGCTGGTGTTATAGAACATCTGGGGCGTGAGGG
GATCTCTCTTGCCCAGCTGCAGCCACTCCTGTTCGCCGTCGCTGTTTGTC
CTCACCCGGTAGCCGGAAACGACCTTTCCCAGGCCGTGGGTGTGCACCCG
GTACGCAAAAGGATGCAGCACCTTCTGCTCGTTCACCTCGCAGGCCGTTT
CCAGGTGCTCCGTCTTCATCGCCGGAATCTGTCCGTCAGTGCCCAGCAGC
AGAGTGCCAGCCAGCTTTTTCCGAGGCTCTTCTGTGTAATCCAAAAACAC
ACCAGAATCATCAGTGGAGCCATCTTTGAACTTATCAATGTGCGCGTAGT
GAACTTGCAGCACAAGGTACTTGATTGGCGAGTTCTTGCCCACCTTGAAA
CCCACTCCCTCGGGCAGATTTAACTTTTGGGCGTCTCTGGCCCAAGCGTA
TACGATCTGGGAATTGGAGTGGGGTCCGCAAGGACTGGCAGACTCTTCTT
GGGAAGCTCGGTTCATCTCGCCACAGTTCCAGGTGGTCTTCGAGGTTCCG
GGCTCTCCGCATCCGTAGAGCAGCATATG

BS09441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3832-PB 1098 Phm-RB 286..1098 829..17 4065 100 Minus
CG3832-PA 1098 Phm-RA 286..1098 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-RA 1603 CG3832-RA 439..1251 829..17 4065 100 Minus
Phm-RB 1439 CG3832-RB 439..1251 829..17 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23985763..23986101 186..524 1695 100 Plus
2R 25286936 2R 23985527..23985696 17..186 850 100 Plus
2R 25286936 2R 23986262..23986397 574..709 680 100 Plus
2R 25286936 2R 23987337..23987410 707..780 370 100 Plus
2R 25286936 2R 23986160..23986210 525..575 255 100 Plus
2R 25286936 2R 23987466..23987516 779..829 255 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:14:14 has no hits.

BS09441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:42 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
Phm-PB 286..1098 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:32 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3832-PA 286..1098 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:04:01 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 439..1260 9..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:28 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 439..1260 9..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:28 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23986262..23986394 574..706 100 <- Plus
2R 23987337..23987409 707..779 100 <- Plus
2R 23987467..23987516 780..829 100   Plus
2R 23985518..23985695 9..185 97 <- Plus
2R 23985763..23986101 186..524 100 <- Plus
2R 23986160..23986208 525..573 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:04:01 Download gff for BS09441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19873041..19873218 9..185 97 <- Plus
arm_2R 19873286..19873624 186..524 100 <- Plus
arm_2R 19873683..19873731 525..573 100 <- Plus
arm_2R 19873785..19873917 574..706 100 <- Plus
arm_2R 19874860..19874932 707..779 100 <- Plus
arm_2R 19874990..19875039 780..829 100   Plus

BS09441.5prime Sequence

749 bp (747 high quality bases) assembled on 2006-04-19

> BS09441.5prime
GAAGTTATCAGTCGACATGCCACGCATATCCGAAATAGCCGCTTCCGTGG
GGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAAGAG
GGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTCCGC
AACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGCCCC
AGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACTACC
ACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGCCCA
CCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCACCT
GGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGTCCT
TGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGACGC
CCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGAACT
CGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGATAAG
TTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACACAGA
AGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACGGAC
AGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTGAAC
GAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGGCC

BS09441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3832-PB 1098 Phm-RB 1..733 17..749 3665 100 Plus
CG3832-PA 1098 Phm-RA 1..733 17..749 3665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-RA 1603 CG3832-RA 154..886 17..749 3665 100 Plus
Phm-RB 1439 CG3832-RB 154..886 17..749 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23988114..23988302 205..17 945 100 Minus
2R 25286936 2R 23985959..23986101 749..607 715 100 Minus
2R 25286936 2R 23986262..23986397 557..422 680 100 Minus
2R 25286936 2R 23987466..23987555 352..263 450 100 Minus
2R 25286936 2R 23987337..23987410 424..351 370 100 Minus
2R 25286936 2R 23987618..23987675 263..206 290 100 Minus
2R 25286936 2R 23986160..23986210 606..556 255 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:28:05 has no hits.

BS09441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:43 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
Phm-PB 1..733 17..749 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:34 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3832-PA 1..733 17..749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:42 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 148..886 11..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:39 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 148..886 11..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:39 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23987467..23987554 264..351 100 <- Minus
2R 23987618..23987675 206..263 100 <- Minus
2R 23988114..23988308 11..205 98   Minus
2R 23985959..23986101 607..749 100 <- Minus
2R 23986160..23986208 558..606 100 <- Minus
2R 23986262..23986394 425..557 100 <- Minus
2R 23987337..23987409 352..424 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:42 Download gff for BS09441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19873482..19873624 607..749 100 <- Minus
arm_2R 19873683..19873731 558..606 100 <- Minus
arm_2R 19873785..19873917 425..557 100 <- Minus
arm_2R 19874860..19874932 352..424 100 <- Minus
arm_2R 19874990..19875077 264..351 100 <- Minus
arm_2R 19875141..19875198 206..263 100 <- Minus
arm_2R 19875637..19875831 11..205 98   Minus

BS09441.complete Sequence

1130 bp assembled on 2008-08-15

GenBank Submission: FJ636421

> BS09441.complete
GAAGTTATCAGTCGACATGCCACGCATATCCGAAATAGCCGCTTCCGTGG
GGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAAGAG
GGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTCCGC
AACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGCCCC
AGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACTACC
ACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGCCCA
CCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCACCT
GGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGTCCT
TGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGACGC
CCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGAACT
CGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGATAAG
TTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACACAGA
AGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACGGAC
AGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTGAAC
GAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGGCCT
GGGAAAGGTCGTTTCCGGCTACCGGGTGAGGACAAACAGCGACGGCGAAC
AGGAGTGGCTGCAGCTGGGCAAGAGAGATCCCCTCACGCCCCAGATGTTC
TATAACACCAGCAACACAGACCCCATAATCGAGGGAGATAAGATCGCCGT
GAGGTGTACTATGCAGAGCACTCGCCATCGGACTACCAAAATAGGTCCCA
CGAACGAGGACGAGATGTGCAACTTCTATCTCATGTACTACGTGGATCAC
GGGGAGACACTAAACATGAAGTTCTGCTTCAGCCAGGGCGCCCCCTACTA
CTTCTGGTCCAATCCCGACTCCGGCCTACACAATATCCCACATATCGAGG
CGAGCACCTTGTAAAAGCTTTCTAGACCAT

BS09441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-RA 1098 CG3832-PA 1..1098 17..1114 5490 100 Plus
Phm-RB 1098 CG3832-PB 1..1098 17..1114 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-RA 1603 CG3832-RA 154..1251 17..1114 5490 100 Plus
Phm-RB 1439 CG3832-RB 154..1251 17..1114 5490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23985763..23986101 945..607 1695 100 Minus
2R 25286936 2R 23988114..23988302 205..17 945 100 Minus
2R 25286936 2R 23985527..23985696 1114..945 850 100 Minus
2R 25286936 2R 23986262..23986397 557..422 680 100 Minus
2R 25286936 2R 23987466..23987555 352..263 450 100 Minus
2R 25286936 2R 23987337..23987410 424..351 370 100 Minus
2R 25286936 2R 23987618..23987675 263..206 290 100 Minus
2R 25286936 2R 23986160..23986210 606..556 255 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:32:51 has no hits.

BS09441.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:53 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 160..1272 11..1122 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:43 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 154..1249 17..1112 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:39 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RA 166..1261 17..1112 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:45 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
Phm-RB 154..1249 17..1112 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:45 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23985529..23985695 946..1112 100 <- Minus
2R 23985763..23986101 607..945 100 <- Minus
2R 23986160..23986208 558..606 100 <- Minus
2R 23986262..23986394 425..557 100 <- Minus
2R 23987337..23987409 352..424 100 <- Minus
2R 23987467..23987554 264..351 100 <- Minus
2R 23987618..23987675 206..263 100 <- Minus
2R 23988114..23988302 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:43 Download gff for BS09441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19874990..19875077 264..351 100 <- Minus
arm_2R 19875141..19875198 206..263 100 <- Minus
arm_2R 19873785..19873917 425..557 100 <- Minus
arm_2R 19874860..19874932 352..424 100 <- Minus
arm_2R 19873052..19873218 946..1112 100 <- Minus
arm_2R 19873286..19873624 607..945 100 <- Minus
arm_2R 19873683..19873731 558..606 100 <- Minus
arm_2R 19875637..19875825 17..205 100   Minus

BS09441.pep Sequence

Translation from 16 to 1113

> BS09441.pep
MPRISEIAASVGLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATA
SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLY
GCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNL
PEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKK
LAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVS
GYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQ
STRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNP
DSGLHNIPHIEASTL*

BS09441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Phm-PA 365 CG3832-PA 1..365 1..365 1969 100 Plus
Phm-PB 365 CG3832-PB 1..365 1..365 1969 100 Plus
CG5235-PB 698 CG5235-PB 231..518 66..339 172 24.3 Plus
CG5235-PA 698 CG5235-PA 231..518 66..339 172 24.3 Plus