Clone Sequence Records
BS09441.3prime Sequence
829 bp (828 high quality bases) assembled on 2006-04-19
> BS09441.3prime
ATGGTCTTGAAAGCTTTTACAAGGTGCTCGCCTCGATATGTGGGATATTG
TGTAGGCCGGAGTCGGGATTGGACCAGAAGTAGTAGGGGGCGCCCTGGCT
GAAGCAGAACTTCATGTTTAGTGTCTCCCCGTGATCCACGTAGTACATGA
GATAGAAGTTGCACATCTCGTCCTCGTTCGTGGGACCTATTTTGGTAGTC
CGATGGCGAGTGCTCTGCATAGTACACCTCACGGCGATCTTATCTCCCTC
GATTATGGGGTCTGTGTTGCTGGTGTTATAGAACATCTGGGGCGTGAGGG
GATCTCTCTTGCCCAGCTGCAGCCACTCCTGTTCGCCGTCGCTGTTTGTC
CTCACCCGGTAGCCGGAAACGACCTTTCCCAGGCCGTGGGTGTGCACCCG
GTACGCAAAAGGATGCAGCACCTTCTGCTCGTTCACCTCGCAGGCCGTTT
CCAGGTGCTCCGTCTTCATCGCCGGAATCTGTCCGTCAGTGCCCAGCAGC
AGAGTGCCAGCCAGCTTTTTCCGAGGCTCTTCTGTGTAATCCAAAAACAC
ACCAGAATCATCAGTGGAGCCATCTTTGAACTTATCAATGTGCGCGTAGT
GAACTTGCAGCACAAGGTACTTGATTGGCGAGTTCTTGCCCACCTTGAAA
CCCACTCCCTCGGGCAGATTTAACTTTTGGGCGTCTCTGGCCCAAGCGTA
TACGATCTGGGAATTGGAGTGGGGTCCGCAAGGACTGGCAGACTCTTCTT
GGGAAGCTCGGTTCATCTCGCCACAGTTCCAGGTGGTCTTCGAGGTTCCG
GGCTCTCCGCATCCGTAGAGCAGCATATG
BS09441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3832-PB | 1098 | Phm-RB | 286..1098 | 829..17 | 4065 | 100 | Minus |
CG3832-PA | 1098 | Phm-RA | 286..1098 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phm-RA | 1603 | CG3832-RA | 439..1251 | 829..17 | 4065 | 100 | Minus |
Phm-RB | 1439 | CG3832-RB | 439..1251 | 829..17 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23985763..23986101 | 186..524 | 1695 | 100 | Plus |
2R | 25286936 | 2R | 23985527..23985696 | 17..186 | 850 | 100 | Plus |
2R | 25286936 | 2R | 23986262..23986397 | 574..709 | 680 | 100 | Plus |
2R | 25286936 | 2R | 23987337..23987410 | 707..780 | 370 | 100 | Plus |
2R | 25286936 | 2R | 23986160..23986210 | 525..575 | 255 | 100 | Plus |
2R | 25286936 | 2R | 23987466..23987516 | 779..829 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:14:14 has no hits.
BS09441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:42 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-PB | 286..1098 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:32 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3832-PA | 286..1098 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:04:01 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 439..1260 | 9..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:28 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 439..1260 | 9..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:28 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23986262..23986394 | 574..706 | 100 | <- | Plus |
2R | 23987337..23987409 | 707..779 | 100 | <- | Plus |
2R | 23987467..23987516 | 780..829 | 100 | | Plus |
2R | 23985518..23985695 | 9..185 | 97 | <- | Plus |
2R | 23985763..23986101 | 186..524 | 100 | <- | Plus |
2R | 23986160..23986208 | 525..573 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:04:01 Download gff for
BS09441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19873041..19873218 | 9..185 | 97 | <- | Plus |
arm_2R | 19873286..19873624 | 186..524 | 100 | <- | Plus |
arm_2R | 19873683..19873731 | 525..573 | 100 | <- | Plus |
arm_2R | 19873785..19873917 | 574..706 | 100 | <- | Plus |
arm_2R | 19874860..19874932 | 707..779 | 100 | <- | Plus |
arm_2R | 19874990..19875039 | 780..829 | 100 | | Plus |
BS09441.5prime Sequence
749 bp (747 high quality bases) assembled on 2006-04-19
> BS09441.5prime
GAAGTTATCAGTCGACATGCCACGCATATCCGAAATAGCCGCTTCCGTGG
GGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAAGAG
GGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTCCGC
AACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGCCCC
AGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACTACC
ACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGCCCA
CCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCACCT
GGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGTCCT
TGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGACGC
CCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGAACT
CGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGATAAG
TTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACACAGA
AGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACGGAC
AGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTGAAC
GAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGGCC
BS09441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3832-PB | 1098 | Phm-RB | 1..733 | 17..749 | 3665 | 100 | Plus |
CG3832-PA | 1098 | Phm-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phm-RA | 1603 | CG3832-RA | 154..886 | 17..749 | 3665 | 100 | Plus |
Phm-RB | 1439 | CG3832-RB | 154..886 | 17..749 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23988114..23988302 | 205..17 | 945 | 100 | Minus |
2R | 25286936 | 2R | 23985959..23986101 | 749..607 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23986262..23986397 | 557..422 | 680 | 100 | Minus |
2R | 25286936 | 2R | 23987466..23987555 | 352..263 | 450 | 100 | Minus |
2R | 25286936 | 2R | 23987337..23987410 | 424..351 | 370 | 100 | Minus |
2R | 25286936 | 2R | 23987618..23987675 | 263..206 | 290 | 100 | Minus |
2R | 25286936 | 2R | 23986160..23986210 | 606..556 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:28:05 has no hits.
BS09441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:43 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-PB | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:34 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3832-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:42 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 148..886 | 11..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:39 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 148..886 | 11..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:39 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23987467..23987554 | 264..351 | 100 | <- | Minus |
2R | 23987618..23987675 | 206..263 | 100 | <- | Minus |
2R | 23988114..23988308 | 11..205 | 98 | | Minus |
2R | 23985959..23986101 | 607..749 | 100 | <- | Minus |
2R | 23986160..23986208 | 558..606 | 100 | <- | Minus |
2R | 23986262..23986394 | 425..557 | 100 | <- | Minus |
2R | 23987337..23987409 | 352..424 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:42 Download gff for
BS09441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19873482..19873624 | 607..749 | 100 | <- | Minus |
arm_2R | 19873683..19873731 | 558..606 | 100 | <- | Minus |
arm_2R | 19873785..19873917 | 425..557 | 100 | <- | Minus |
arm_2R | 19874860..19874932 | 352..424 | 100 | <- | Minus |
arm_2R | 19874990..19875077 | 264..351 | 100 | <- | Minus |
arm_2R | 19875141..19875198 | 206..263 | 100 | <- | Minus |
arm_2R | 19875637..19875831 | 11..205 | 98 | | Minus |
BS09441.complete Sequence
1130 bp assembled on 2008-08-15
GenBank Submission: FJ636421
> BS09441.complete
GAAGTTATCAGTCGACATGCCACGCATATCCGAAATAGCCGCTTCCGTGG
GGCTGCTCCTGCTTATCGGAGTGATCAGTGTGGATGGCCTTGTGAAAGAG
GGGGATTACCAAAACTCCCTTTATCAACAGAATCTCGAGTCGAACTCCGC
AACAGGCGCAACGGCTTCGTTTCCATTCCTGATGCCCAACGTTTCGCCCC
AGACCCCCGATCTGTACTTGTGCACGCCCATCAAGGTCGACCCAACTACC
ACCTACTATATTGTTGGCTTCAATCCTAATGCCACGATGAACACGGCCCA
CCATATGCTGCTCTACGGATGCGGAGAGCCCGGAACCTCGAAGACCACCT
GGAACTGTGGCGAGATGAACCGAGCTTCCCAAGAAGAGTCTGCCAGTCCT
TGCGGACCCCACTCCAATTCCCAGATCGTATACGCTTGGGCCAGAGACGC
CCAAAAGTTAAATCTGCCCGAGGGAGTGGGTTTCAAGGTGGGCAAGAACT
CGCCAATCAAGTACCTTGTGCTGCAAGTTCACTACGCGCACATTGATAAG
TTCAAAGATGGCTCCACTGATGATTCTGGTGTGTTTTTGGATTACACAGA
AGAGCCTCGGAAAAAGCTGGCTGGCACTCTGCTGCTGGGCACTGACGGAC
AGATTCCGGCGATGAAGACGGAGCACCTGGAAACGGCCTGCGAGGTGAAC
GAGCAGAAGGTGCTGCATCCTTTTGCGTACCGGGTGCACACCCACGGCCT
GGGAAAGGTCGTTTCCGGCTACCGGGTGAGGACAAACAGCGACGGCGAAC
AGGAGTGGCTGCAGCTGGGCAAGAGAGATCCCCTCACGCCCCAGATGTTC
TATAACACCAGCAACACAGACCCCATAATCGAGGGAGATAAGATCGCCGT
GAGGTGTACTATGCAGAGCACTCGCCATCGGACTACCAAAATAGGTCCCA
CGAACGAGGACGAGATGTGCAACTTCTATCTCATGTACTACGTGGATCAC
GGGGAGACACTAAACATGAAGTTCTGCTTCAGCCAGGGCGCCCCCTACTA
CTTCTGGTCCAATCCCGACTCCGGCCTACACAATATCCCACATATCGAGG
CGAGCACCTTGTAAAAGCTTTCTAGACCAT
BS09441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phm-RA | 1098 | CG3832-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Phm-RB | 1098 | CG3832-PB | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phm-RA | 1603 | CG3832-RA | 154..1251 | 17..1114 | 5490 | 100 | Plus |
Phm-RB | 1439 | CG3832-RB | 154..1251 | 17..1114 | 5490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23985763..23986101 | 945..607 | 1695 | 100 | Minus |
2R | 25286936 | 2R | 23988114..23988302 | 205..17 | 945 | 100 | Minus |
2R | 25286936 | 2R | 23985527..23985696 | 1114..945 | 850 | 100 | Minus |
2R | 25286936 | 2R | 23986262..23986397 | 557..422 | 680 | 100 | Minus |
2R | 25286936 | 2R | 23987466..23987555 | 352..263 | 450 | 100 | Minus |
2R | 25286936 | 2R | 23987337..23987410 | 424..351 | 370 | 100 | Minus |
2R | 25286936 | 2R | 23987618..23987675 | 263..206 | 290 | 100 | Minus |
2R | 25286936 | 2R | 23986160..23986210 | 606..556 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:51 has no hits.
BS09441.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:53 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RA | 160..1272 | 11..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:43 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 154..1249 | 17..1112 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:39 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RA | 166..1261 | 17..1112 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:45 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phm-RB | 154..1249 | 17..1112 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:45 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23985529..23985695 | 946..1112 | 100 | <- | Minus |
2R | 23985763..23986101 | 607..945 | 100 | <- | Minus |
2R | 23986160..23986208 | 558..606 | 100 | <- | Minus |
2R | 23986262..23986394 | 425..557 | 100 | <- | Minus |
2R | 23987337..23987409 | 352..424 | 100 | <- | Minus |
2R | 23987467..23987554 | 264..351 | 100 | <- | Minus |
2R | 23987618..23987675 | 206..263 | 100 | <- | Minus |
2R | 23988114..23988302 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:43 Download gff for
BS09441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19874990..19875077 | 264..351 | 100 | <- | Minus |
arm_2R | 19875141..19875198 | 206..263 | 100 | <- | Minus |
arm_2R | 19873785..19873917 | 425..557 | 100 | <- | Minus |
arm_2R | 19874860..19874932 | 352..424 | 100 | <- | Minus |
arm_2R | 19873052..19873218 | 946..1112 | 100 | <- | Minus |
arm_2R | 19873286..19873624 | 607..945 | 100 | <- | Minus |
arm_2R | 19873683..19873731 | 558..606 | 100 | <- | Minus |
arm_2R | 19875637..19875825 | 17..205 | 100 | | Minus |
BS09441.pep Sequence
Translation from 16 to 1113
> BS09441.pep
MPRISEIAASVGLLLLIGVISVDGLVKEGDYQNSLYQQNLESNSATGATA
SFPFLMPNVSPQTPDLYLCTPIKVDPTTTYYIVGFNPNATMNTAHHMLLY
GCGEPGTSKTTWNCGEMNRASQEESASPCGPHSNSQIVYAWARDAQKLNL
PEGVGFKVGKNSPIKYLVLQVHYAHIDKFKDGSTDDSGVFLDYTEEPRKK
LAGTLLLGTDGQIPAMKTEHLETACEVNEQKVLHPFAYRVHTHGLGKVVS
GYRVRTNSDGEQEWLQLGKRDPLTPQMFYNTSNTDPIIEGDKIAVRCTMQ
STRHRTTKIGPTNEDEMCNFYLMYYVDHGETLNMKFCFSQGAPYYFWSNP
DSGLHNIPHIEASTL*
BS09441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phm-PA | 365 | CG3832-PA | 1..365 | 1..365 | 1969 | 100 | Plus |
Phm-PB | 365 | CG3832-PB | 1..365 | 1..365 | 1969 | 100 | Plus |
CG5235-PB | 698 | CG5235-PB | 231..518 | 66..339 | 172 | 24.3 | Plus |
CG5235-PA | 698 | CG5235-PA | 231..518 | 66..339 | 172 | 24.3 | Plus |