Clone Sequence Records
BS09448.3prime Sequence
925 bp (822 high quality bases) assembled on 2006-04-19
> BS09448.3prime
ATGGTCTAGAAAGCTTTCATTTTTGTCCAAAATCTTTCTTCCCGGAAACC
TTCTCCACTCGAAGGATAATATCGCGCTTTGAGGCCATAACCGGGCTAGT
TGGAGCCCACTCGATCTTCTTAATGGTTTTATCACATGTGTGGAATCGGT
GGTTGCGCAAAATATGCACAAGTCCAAGCTTGGATTGAAGCAGACCCAAC
CGCATGCCAATGCAGTTTCGCGGACCAACACCAAACGGCATGTATGCGTC
CATGTTAAGATTGTCGCGGTTGCTCGAATTGAAGCGCTCCGGATCGTACT
TCTCGGGGTCCGGCCAGTACTGGGGGTCACGATGAACGGCCACAGTGGAC
ATATAAATGGACATGCCGTGCGGCAGCTCCATGTTGTGGAATGGTTCGAG
GGTGAATCGCTCACCCTCCGCCGGTTGAGAGCATTCTCGTTCTATATAGC
CCACGATCGGATACTTGCGGAGTGTCTCGTTGACAACCTGAGATAGGTAG
GGCATCTCCTGAATACGCTCATAGCTTATATGGTCCTCGTCCCCGAAGAA
GTCAACGATCTCTTGCCGCAGACGGTCCTGTAGAGCCTCGTTCTTGGCCA
GCTCGTAAAGCGTCATCGTCATTGTGGACGCACTAGTTTCAAATCCGGCG
GTCTGAAAAACAGCTGCCTGGGCAACTAAGTAGTCCAAGTCAACTTCCTT
CGACATCTTCCCCGGGTTGGCAGCAGCCTCGCGCTTTAGGGCTAGAAGGA
TGTCGATAAGGTCGTTTCGCTTTTCGCCTGTCCTTTCGCGCTCCTTTAGA
ACGTAGTTGACGCTGGACCGGATGAACTTTGTGGTTTCCCTAGAAAAGAG
TTTCACACGGGCCAGTGACGCCAGAGCCGGGATCATAAAAATAATCGCAA
AAGTCATGCCCCTACTAAAGTCAGC
BS09448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8345-PA | 1545 | Cyp6w1-RA | 661..1545 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6w1-RB | 2392 | CG8345-RB | 668..1577 | 925..17 | 4465 | 99.6 | Minus |
Cyp6w1-RA | 1628 | CG8345-RA | 668..1577 | 925..17 | 4465 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6174477..6175380 | 920..17 | 4445 | 99.4 | Minus |
Blast to na_te.dros performed 2015-01-31 14:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3376..3414 | 766..727 | 116 | 80 | Minus |
BS09448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:53 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8345-PA | 636..1545 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:47 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8345-PA | 636..1545 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:58 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 668..1577 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:27 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 668..1577 | 17..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:27 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6174471..6175380 | 17..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:58 Download gff for
BS09448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2061976..2062885 | 17..925 | 99 | | Minus |
BS09448.5prime Sequence
867 bp (857 high quality bases) assembled on 2006-04-19
> BS09448.5prime
GAAGTTATCAGTCGACATGTTGTTACTGCTTCTTCTCGGTTCATTAACGA
TCGTCTTCTATATCTGGCAGAGGCGAACCTTATCGTTTTGGGAACGCCAT
GGAGTAAAATACATCCGTCCGTTTCCCGTTGTAGGCTGCACCCGGGAGTT
TTTGACCGCAAAAGTGCCGTTCTTCGAGCAGATTCAAAAATTCCACGAAG
CGCCTGGCTTCGAGAACGAGCCTTTCGTTGGAGTATACATGACCCATCGT
CCGGCACTTGTCATTCGCGATTTAGAACTGATCAAGACGGTGATGATCAA
GAAGTTTCAATACTTCAACAACCGCGTCCTTCAAACTGACCCGCACAACG
ACGCGCTTGGCTATAAAAACCTCTTCTTTGCACGAAGCCCAGGATGGAGG
GAATTGCGCACAAAAATCTCTCCGGTTTTTACATCTGGCAAGATCAAGCA
AATGTATCCTCTAATGGTGAAGATTGGAAAGAACTTGCAGGACAGCGCCG
AGCGTCTAGGCAGTGGTACGGAAGTCCAAGTGAAGGATCTATGCTCCCGG
TTCACCACTGACCTAATAGCGACTATTGCCTTTGGCGTAGAGGCCAACGC
TCTGCAGGACGCCAAGAGCGAGTTCTTTTACCACAATAGAGCTATATTTT
CGCTGACCTTAAGTAGGGGCATTGACTTTGCGATTATTTTTATGATCCCG
GCTCTGGCGTCACTGGCCCGTGTGAAACTCTTTTCTAGGGAAACCACAAA
GTTCATCCGGTCCAGCGTCAACTACGTTCTAAAGGAGCGCGAAAGGACAG
GCGAAAAGCGAAACGACCTTATCGACATCCTTCTAGCCCTAAAGCGCGAG
GCTGCTGCCACCCCGGG
BS09448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8345-PA | 1545 | Cyp6w1-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6w1-RB | 2392 | CG8345-RB | 31..883 | 15..867 | 4250 | 99.9 | Plus |
Cyp6w1-RA | 1628 | CG8345-RA | 31..883 | 15..867 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6173714..6174171 | 15..472 | 2290 | 100 | Plus |
2R | 25286936 | 2R | 6174290..6174686 | 471..867 | 1970 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-11 13:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3376..3414 | 812..851 | 116 | 80 | Plus |
BS09448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:55 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8345-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:49 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8345-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:19:03 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 25..883 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:46 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 25..883 | 9..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:46 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6174292..6174686 | 473..867 | 99 | | Plus |
2R | 6173708..6174171 | 9..472 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:19:03 Download gff for
BS09448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2061213..2061676 | 9..472 | 99 | -> | Plus |
arm_2R | 2061797..2062191 | 473..867 | 99 | | Plus |
BS09448.complete Sequence
1577 bp (1577 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636422
> BS09448.complete
GAAGTTATCAGTCGACATGTTGTTACTGCTTCTTCTCGGTTCATTAACGA
TCGTCTTCTATATCTGGCAGAGGCGAACCTTATCGTTTTGGGAACGCCAT
GGAGTAAAATACATCCGTCCGTTTCCCGTTGTAGGCTGCACCCGGGAGTT
TTTGACCGCAAAAGTGCCGTTCTTCGAGCAGATTCAAAAATTCCACGAAG
CGCCTGGCTTCGAGAACGAGCCTTTCGTTGGAGTATACATGACCCATCGT
CCGGCACTTGTCATTCGCGATTTAGAACTGATCAAGACGGTGATGATCAA
GAAGTTTCAATACTTCAACAACCGCGTCCTTCAAACTGACCCGCACAACG
ACGCGCTTGGCTATAAAAACCTCTTCTTTGCACGAAGCCCAGGATGGAGG
GAATTGCGCACAAAAATCTCTCCGGTTTTTACATCTGGCAAGATCAAGCA
AATGTATCCTCTAATGGTGAAGATTGGAAAGAACTTGCAGGACAGCGCCG
AGCGTCTAGGCAGTGGTACGGAAGTCCAAGTGAAGGATCTATGCTCCCGG
TTCACCACTGACCTAATAGCGACTATTGCCTTTGGCGTAGAGGCCAACGC
TCTGCAGGACGCCAAGAGCGAGTTCTTTTACCACAATAGAGCTATATTTT
CGCTGACCTTAAGTAGGGGCATTGACTTTGCGATTATTTTTATGATCCCG
GCTCTGGCGTCACTGGCCCGTGTGAAACTCTTTTCTAGGGAAACCACAAA
GTTCATCCGGTCCAGCGTCAACTACGTTCTAAAGGAGCGCGAAAGGACAG
GCGAAAAGCGAAACGACCTTATCGACATCCTTCTAGCCCTAAAGCGCGAG
GCTGCTGCCAACCCGGGGAAGATGTCGAAGGAAGTTGACTTGGACTACTT
AGTTGCCCAGGCAGCTGTTTTTCAGACCGCCGGATTTGAAACTAGTGCGT
CCACAATGACGATGACGCTTTACGAGCTGGCCAAGAACGAGGCTCTACAG
GACCGTCTGCGGCAAGAGATCGTTGACTTCTTCGGGGACGAGGACCATAT
AAGCTATGAGCGTATTCAGGAGATGCCCTACCTATCTCAGGTTGTCAACG
AGACACTCCGCAAGTATCCGATCGTGGGCTATATAGAACGAGAATGCTCT
CAACCGGCGGAGGGTGAGCGATTCACCCTCGAACCATTCCACAACATGGA
GCTGCCGCACGGCATGTCCATTTATATGTCCACTGTGGCCGTTCATCGTG
ACCCCCAGTACTGGCCGGACCCCGAGAAGTACGATCCGGAGCGCTTCAAT
TCGAGCAACCGCGACAATCTTAACATGGACGCATACATGCCGTTTGGTGT
TGGTCCGCGAAACTGCATTGGCATGCGGTTGGGTCTGCTTCAATCCAAGC
TTGGACTTGTGCATATTTTGCGCAACCACCGATTCCACACATGTGATAAA
ACCATTAAGAAGATCGAGTGGGCTCCAACTAGCCCGGTTATGGCCTCAAA
GCGCGATATTATCCTTCGAGTGGAGAAGGTTTCCGGGAAGAAAGATTTTG
GACAAAAATGAAAGCTTTCTAGACCAT
BS09448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6w1-RB | 1545 | CG8345-PB | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Cyp6w1-RA | 1545 | CG8345-PA | 1..1545 | 17..1561 | 7725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6w1-RB | 2392 | CG8345-RB | 31..1577 | 15..1561 | 7735 | 100 | Plus |
Cyp6w1-RA | 1628 | CG8345-RA | 31..1577 | 15..1561 | 7735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6174290..6175380 | 471..1561 | 5455 | 100 | Plus |
2R | 25286936 | 2R | 6173714..6174171 | 15..472 | 2290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:36 has no hits.
BS09448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:55 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 1..1545 | 17..1561 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:11 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 13..1565 | 9..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:28 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 38..1569 | 22..1553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:55 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 13..1565 | 9..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:32 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp6w1-RA | 38..1569 | 22..1553 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:32 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6173721..6174171 | 22..472 | 100 | -> | Plus |
2R | 6174292..6175372 | 473..1553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:28 Download gff for
BS09448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2061226..2061676 | 22..472 | 100 | -> | Plus |
arm_2R | 2061797..2062877 | 473..1553 | 100 | | Plus |
BS09448.pep Sequence
Translation from 16 to 1560
> BS09448.pep
MLLLLLLGSLTIVFYIWQRRTLSFWERHGVKYIRPFPVVGCTREFLTAKV
PFFEQIQKFHEAPGFENEPFVGVYMTHRPALVIRDLELIKTVMIKKFQYF
NNRVLQTDPHNDALGYKNLFFARSPGWRELRTKISPVFTSGKIKQMYPLM
VKIGKNLQDSAERLGSGTEVQVKDLCSRFTTDLIATIAFGVEANALQDAK
SEFFYHNRAIFSLTLSRGIDFAIIFMIPALASLARVKLFSRETTKFIRSS
VNYVLKERERTGEKRNDLIDILLALKREAAANPGKMSKEVDLDYLVAQAA
VFQTAGFETSASTMTMTLYELAKNEALQDRLRQEIVDFFGDEDHISYERI
QEMPYLSQVVNETLRKYPIVGYIERECSQPAEGERFTLEPFHNMELPHGM
SIYMSTVAVHRDPQYWPDPEKYDPERFNSSNRDNLNMDAYMPFGVGPRNC
IGMRLGLLQSKLGLVHILRNHRFHTCDKTIKKIEWAPTSPVMASKRDIIL
RVEKVSGKKDFGQK*
BS09448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp6w1-PB | 514 | CG8345-PB | 1..514 | 1..514 | 2671 | 100 | Plus |
Cyp6w1-PA | 514 | CG8345-PA | 1..514 | 1..514 | 2671 | 100 | Plus |
Cyp6g1-PB | 524 | CG8453-PB | 6..510 | 3..502 | 1185 | 44 | Plus |
Cyp6g1-PA | 524 | CG8453-PA | 6..510 | 3..502 | 1185 | 44 | Plus |
Cyp6v1-PC | 520 | CG1829-PC | 7..518 | 2..503 | 1094 | 42.1 | Plus |