Clone BS09448 Report

Search the DGRC for BS09448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCyp6w1-RA
Protein status:BS09448.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09448.3prime Sequence

925 bp (822 high quality bases) assembled on 2006-04-19

> BS09448.3prime
ATGGTCTAGAAAGCTTTCATTTTTGTCCAAAATCTTTCTTCCCGGAAACC
TTCTCCACTCGAAGGATAATATCGCGCTTTGAGGCCATAACCGGGCTAGT
TGGAGCCCACTCGATCTTCTTAATGGTTTTATCACATGTGTGGAATCGGT
GGTTGCGCAAAATATGCACAAGTCCAAGCTTGGATTGAAGCAGACCCAAC
CGCATGCCAATGCAGTTTCGCGGACCAACACCAAACGGCATGTATGCGTC
CATGTTAAGATTGTCGCGGTTGCTCGAATTGAAGCGCTCCGGATCGTACT
TCTCGGGGTCCGGCCAGTACTGGGGGTCACGATGAACGGCCACAGTGGAC
ATATAAATGGACATGCCGTGCGGCAGCTCCATGTTGTGGAATGGTTCGAG
GGTGAATCGCTCACCCTCCGCCGGTTGAGAGCATTCTCGTTCTATATAGC
CCACGATCGGATACTTGCGGAGTGTCTCGTTGACAACCTGAGATAGGTAG
GGCATCTCCTGAATACGCTCATAGCTTATATGGTCCTCGTCCCCGAAGAA
GTCAACGATCTCTTGCCGCAGACGGTCCTGTAGAGCCTCGTTCTTGGCCA
GCTCGTAAAGCGTCATCGTCATTGTGGACGCACTAGTTTCAAATCCGGCG
GTCTGAAAAACAGCTGCCTGGGCAACTAAGTAGTCCAAGTCAACTTCCTT
CGACATCTTCCCCGGGTTGGCAGCAGCCTCGCGCTTTAGGGCTAGAAGGA
TGTCGATAAGGTCGTTTCGCTTTTCGCCTGTCCTTTCGCGCTCCTTTAGA
ACGTAGTTGACGCTGGACCGGATGAACTTTGTGGTTTCCCTAGAAAAGAG
TTTCACACGGGCCAGTGACGCCAGAGCCGGGATCATAAAAATAATCGCAA
AAGTCATGCCCCTACTAAAGTCAGC

BS09448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8345-PA 1545 Cyp6w1-RA 661..1545 901..17 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6w1-RB 2392 CG8345-RB 668..1577 925..17 4465 99.6 Minus
Cyp6w1-RA 1628 CG8345-RA 668..1577 925..17 4465 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6174477..6175380 920..17 4445 99.4 Minus
Blast to na_te.dros performed 2015-01-31 14:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 3376..3414 766..727 116 80 Minus

BS09448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:53 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8345-PA 636..1545 17..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:47 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8345-PA 636..1545 17..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:58 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 668..1577 17..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:27 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 668..1577 17..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:27 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6174471..6175380 17..925 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:58 Download gff for BS09448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2061976..2062885 17..925 99   Minus

BS09448.5prime Sequence

867 bp (857 high quality bases) assembled on 2006-04-19

> BS09448.5prime
GAAGTTATCAGTCGACATGTTGTTACTGCTTCTTCTCGGTTCATTAACGA
TCGTCTTCTATATCTGGCAGAGGCGAACCTTATCGTTTTGGGAACGCCAT
GGAGTAAAATACATCCGTCCGTTTCCCGTTGTAGGCTGCACCCGGGAGTT
TTTGACCGCAAAAGTGCCGTTCTTCGAGCAGATTCAAAAATTCCACGAAG
CGCCTGGCTTCGAGAACGAGCCTTTCGTTGGAGTATACATGACCCATCGT
CCGGCACTTGTCATTCGCGATTTAGAACTGATCAAGACGGTGATGATCAA
GAAGTTTCAATACTTCAACAACCGCGTCCTTCAAACTGACCCGCACAACG
ACGCGCTTGGCTATAAAAACCTCTTCTTTGCACGAAGCCCAGGATGGAGG
GAATTGCGCACAAAAATCTCTCCGGTTTTTACATCTGGCAAGATCAAGCA
AATGTATCCTCTAATGGTGAAGATTGGAAAGAACTTGCAGGACAGCGCCG
AGCGTCTAGGCAGTGGTACGGAAGTCCAAGTGAAGGATCTATGCTCCCGG
TTCACCACTGACCTAATAGCGACTATTGCCTTTGGCGTAGAGGCCAACGC
TCTGCAGGACGCCAAGAGCGAGTTCTTTTACCACAATAGAGCTATATTTT
CGCTGACCTTAAGTAGGGGCATTGACTTTGCGATTATTTTTATGATCCCG
GCTCTGGCGTCACTGGCCCGTGTGAAACTCTTTTCTAGGGAAACCACAAA
GTTCATCCGGTCCAGCGTCAACTACGTTCTAAAGGAGCGCGAAAGGACAG
GCGAAAAGCGAAACGACCTTATCGACATCCTTCTAGCCCTAAAGCGCGAG
GCTGCTGCCACCCCGGG

BS09448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8345-PA 1545 Cyp6w1-RA 1..851 17..867 4230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6w1-RB 2392 CG8345-RB 31..883 15..867 4250 99.9 Plus
Cyp6w1-RA 1628 CG8345-RA 31..883 15..867 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6173714..6174171 15..472 2290 100 Plus
2R 25286936 2R 6174290..6174686 471..867 1970 99.7 Plus
Blast to na_te.dros performed 2015-02-11 13:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 3376..3414 812..851 116 80 Plus

BS09448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:09:55 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8345-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:49 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8345-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:19:03 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 25..883 9..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:46 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 25..883 9..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:46 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6174292..6174686 473..867 99   Plus
2R 6173708..6174171 9..472 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:19:03 Download gff for BS09448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2061213..2061676 9..472 99 -> Plus
arm_2R 2061797..2062191 473..867 99   Plus

BS09448.complete Sequence

1577 bp (1577 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636422

> BS09448.complete
GAAGTTATCAGTCGACATGTTGTTACTGCTTCTTCTCGGTTCATTAACGA
TCGTCTTCTATATCTGGCAGAGGCGAACCTTATCGTTTTGGGAACGCCAT
GGAGTAAAATACATCCGTCCGTTTCCCGTTGTAGGCTGCACCCGGGAGTT
TTTGACCGCAAAAGTGCCGTTCTTCGAGCAGATTCAAAAATTCCACGAAG
CGCCTGGCTTCGAGAACGAGCCTTTCGTTGGAGTATACATGACCCATCGT
CCGGCACTTGTCATTCGCGATTTAGAACTGATCAAGACGGTGATGATCAA
GAAGTTTCAATACTTCAACAACCGCGTCCTTCAAACTGACCCGCACAACG
ACGCGCTTGGCTATAAAAACCTCTTCTTTGCACGAAGCCCAGGATGGAGG
GAATTGCGCACAAAAATCTCTCCGGTTTTTACATCTGGCAAGATCAAGCA
AATGTATCCTCTAATGGTGAAGATTGGAAAGAACTTGCAGGACAGCGCCG
AGCGTCTAGGCAGTGGTACGGAAGTCCAAGTGAAGGATCTATGCTCCCGG
TTCACCACTGACCTAATAGCGACTATTGCCTTTGGCGTAGAGGCCAACGC
TCTGCAGGACGCCAAGAGCGAGTTCTTTTACCACAATAGAGCTATATTTT
CGCTGACCTTAAGTAGGGGCATTGACTTTGCGATTATTTTTATGATCCCG
GCTCTGGCGTCACTGGCCCGTGTGAAACTCTTTTCTAGGGAAACCACAAA
GTTCATCCGGTCCAGCGTCAACTACGTTCTAAAGGAGCGCGAAAGGACAG
GCGAAAAGCGAAACGACCTTATCGACATCCTTCTAGCCCTAAAGCGCGAG
GCTGCTGCCAACCCGGGGAAGATGTCGAAGGAAGTTGACTTGGACTACTT
AGTTGCCCAGGCAGCTGTTTTTCAGACCGCCGGATTTGAAACTAGTGCGT
CCACAATGACGATGACGCTTTACGAGCTGGCCAAGAACGAGGCTCTACAG
GACCGTCTGCGGCAAGAGATCGTTGACTTCTTCGGGGACGAGGACCATAT
AAGCTATGAGCGTATTCAGGAGATGCCCTACCTATCTCAGGTTGTCAACG
AGACACTCCGCAAGTATCCGATCGTGGGCTATATAGAACGAGAATGCTCT
CAACCGGCGGAGGGTGAGCGATTCACCCTCGAACCATTCCACAACATGGA
GCTGCCGCACGGCATGTCCATTTATATGTCCACTGTGGCCGTTCATCGTG
ACCCCCAGTACTGGCCGGACCCCGAGAAGTACGATCCGGAGCGCTTCAAT
TCGAGCAACCGCGACAATCTTAACATGGACGCATACATGCCGTTTGGTGT
TGGTCCGCGAAACTGCATTGGCATGCGGTTGGGTCTGCTTCAATCCAAGC
TTGGACTTGTGCATATTTTGCGCAACCACCGATTCCACACATGTGATAAA
ACCATTAAGAAGATCGAGTGGGCTCCAACTAGCCCGGTTATGGCCTCAAA
GCGCGATATTATCCTTCGAGTGGAGAAGGTTTCCGGGAAGAAAGATTTTG
GACAAAAATGAAAGCTTTCTAGACCAT

BS09448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6w1-RB 1545 CG8345-PB 1..1545 17..1561 7725 100 Plus
Cyp6w1-RA 1545 CG8345-PA 1..1545 17..1561 7725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6w1-RB 2392 CG8345-RB 31..1577 15..1561 7735 100 Plus
Cyp6w1-RA 1628 CG8345-RA 31..1577 15..1561 7735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6174290..6175380 471..1561 5455 100 Plus
2R 25286936 2R 6173714..6174171 15..472 2290 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:09:36 has no hits.

BS09448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:55 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 1..1545 17..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:11 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 13..1565 9..1561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:28 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 38..1569 22..1553 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:55 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 13..1565 9..1561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:32 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp6w1-RA 38..1569 22..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:32 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6173721..6174171 22..472 100 -> Plus
2R 6174292..6175372 473..1553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:28 Download gff for BS09448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2061226..2061676 22..472 100 -> Plus
arm_2R 2061797..2062877 473..1553 100   Plus

BS09448.pep Sequence

Translation from 16 to 1560

> BS09448.pep
MLLLLLLGSLTIVFYIWQRRTLSFWERHGVKYIRPFPVVGCTREFLTAKV
PFFEQIQKFHEAPGFENEPFVGVYMTHRPALVIRDLELIKTVMIKKFQYF
NNRVLQTDPHNDALGYKNLFFARSPGWRELRTKISPVFTSGKIKQMYPLM
VKIGKNLQDSAERLGSGTEVQVKDLCSRFTTDLIATIAFGVEANALQDAK
SEFFYHNRAIFSLTLSRGIDFAIIFMIPALASLARVKLFSRETTKFIRSS
VNYVLKERERTGEKRNDLIDILLALKREAAANPGKMSKEVDLDYLVAQAA
VFQTAGFETSASTMTMTLYELAKNEALQDRLRQEIVDFFGDEDHISYERI
QEMPYLSQVVNETLRKYPIVGYIERECSQPAEGERFTLEPFHNMELPHGM
SIYMSTVAVHRDPQYWPDPEKYDPERFNSSNRDNLNMDAYMPFGVGPRNC
IGMRLGLLQSKLGLVHILRNHRFHTCDKTIKKIEWAPTSPVMASKRDIIL
RVEKVSGKKDFGQK*

BS09448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp6w1-PB 514 CG8345-PB 1..514 1..514 2671 100 Plus
Cyp6w1-PA 514 CG8345-PA 1..514 1..514 2671 100 Plus
Cyp6g1-PB 524 CG8453-PB 6..510 3..502 1185 44 Plus
Cyp6g1-PA 524 CG8453-PA 6..510 3..502 1185 44 Plus
Cyp6v1-PC 520 CG1829-PC 7..518 2..503 1094 42.1 Plus