Clone Sequence Records
BS09452.3prime Sequence
935 bp (814 high quality bases) assembled on 2006-04-19
> BS09452.3prime
ATGGTCTAGAAAGCTTCTAACAAATGCCGGCTTTGGGAAAGGTGCCATCG
TTAGCGCCAGTTCCACAAGGACCTCCGCAGCGCTGGAAGGCACCTGGCGG
TCCGTAGCTAAGTTTCTGGATGGTACACTTCTCAATAGGTCCGGTTGGCC
GGCAGTAGGATGTGTACCTGGCCCACGGCAGTGGCTCCTTGGGCGGCACA
CAGTTCGGCAAGTAGCTGAGTTTGTATGTGGTGCACTTTTCCATGGGTCC
CTCGTTCCGGCAGAATCCCTGTCGTGGTCGGACGGACTCGGCGCGTGGGA
AACAGGTGACATCCACCGGCATGTACGACAACTTGTTCACCGTGCAGCGC
TCCATGGCTCCAGTGGGCCGGCAGAAGGCCGTTCTCGGCATGATCGGAGC
CCTCCTCACGTGGGGCTTGGCCACAAAATCGTGTTTCTGAGTGGTCATCG
CATACATGGGCCCGTCGAATCGCAGACCATTTTCCATCGGGCGAATCGGA
GGAGTGCGCTCCGTGCAGTTCGGTTGATAGGACAGCTTTTGAATGGTGCA
CCTTTCCAGCGGTCCTGAGGGCCGGCAGAAAGTGTCCCTGGGCAGGACGG
GCGCCGGTTTGGTCCTGGAGGCATCCACGGGCATGTAGCTCAGCTTGTAC
ACCGTGCTGCCGGAACCGGCGTCGTTGCCACAGAAGCGCAAGGTGGTAAG
CGGCGTCACCGGAGCCGTACGTGCCTCATTGCAGTTGGGCATGTAGCTTA
GGTTGTAGGTGGTGCAGACATTGGAGTAGCGCGGCGGCACACAACGTATT
TTGTCGGCCCAGGGCGTGGGCTCCTTGGCCGGCAAACAGACCGGCATGTA
GGACAGCTTTTGGATGGTGCAGCGCTCCATGGGTCCTGCCGGCTTGCAGT
AGTGCGATCCCTGGACCATGGGCTTCGGAGGCGGA
BS09452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 1485 | CG7131-RA | 567..1485 | 935..17 | 4570 | 99.8 | Minus |
| CG7131-PB | 1389 | CG7131-RB | 471..1389 | 935..17 | 4570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 777..1695 | 935..17 | 4580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287080..18287546 | 71..537 | 2335 | 100 | Plus |
| 3R | 32079331 | 3R | 18287602..18288001 | 536..935 | 1985 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18286965..18287022 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:53:19 has no hits.
BS09452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:04 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PB | 472..1389 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:19:59 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PB | 472..1389 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:51:02 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 778..1698 | 12..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:58 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 778..1698 | 12..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:58 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18286962..18287020 | 12..72 | 95 | <- | Plus |
| 3R | 18287082..18287544 | 73..535 | 100 | <- | Plus |
| 3R | 18287602..18288000 | 536..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:51:02 Download gff for
BS09452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14112684..14112742 | 12..72 | 95 | <- | Plus |
| arm_3R | 14112804..14113266 | 73..535 | 100 | <- | Plus |
| arm_3R | 14113324..14113722 | 536..934 | 99 | | Plus |
BS09452.5prime Sequence
900 bp (840 high quality bases) assembled on 2006-04-19
> BS09452.5prime
GAAGTTATCTGTCGACATGTCCGGTGATTGCAACACGTATTGCCAAAATG
CCTGCGATCCCTGCCAGGCGCCCACGGATTTCTCGCCCTGTCCGCCGAAT
TCAACGTGTCCGCCTTGCGACTGCGGCGACTATGCAGGATGCTGCTACCA
GCAGCCGCCGCGCACCATGCCCATCCTGCCCAAGTCGCACTTCATGCGCT
CCACAGCGCCGCTGGACACGGACACCATATACCGACGATCGTTCTATGCT
AACTGTGGCGACAACATTAGGGCCCGACCCGTAATGCCGTGCTCCCAAAT
ACGAGCATCCACGGCGCCGCTGGAAAAGTGCACCATACAGAAGTTATCCT
ACATGCCACCCTGTCCGGTTAAGCGGACGCCACCCATTGTTCCCATGGAG
AGCGGCCTGCGCTTCGAGGGACCCATCTATGCGATGACCTCGCAGAAGCA
CGACTACGTGCCCAAGGGGATCGTGAAGCGGGATCCCATTAAGCCGCGTG
TGGCTATCTGCACGTCGAATGCACCGATGGAGCGCTGTACTATCCAGAAG
CTGAGCTACATGCCCATCGATGTGTGCCAGAATCCGCCTCCGAAGGCCAT
GGTCCAGGGATCGCACTACTGCAAGCCGGCAGGACCCATGGAGCGCTGCA
CCATCCAAAAGCTGTCCTACATGCCGGTCTGTTTGCCGGCCAAGGAGCCC
ACGCCCTGGGCCGACAAAATACGTTGTGTGCCGCCGCGCTACTCCAATGT
CTGCACCACCTACAACCTAAGCTACATGCCCAACTGCAATGAGGCACGTA
CGGCTCCGGTGACGCCGCTTACCACCTTGCGCTTCTGTGGCAACGACGCC
GGTTCCGGCAGCACGGTGTACAAGCTGAGCTACATGCCCGTGGATGCCTC
BS09452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 1485 | CG7131-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
| CG7131-PB | 1389 | CG7131-RB | 43..788 | 155..900 | 3730 | 100 | Plus |
| CG7131-PB | 1389 | CG7131-RB | 1..42 | 48..89 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 210..1094 | 16..900 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287684..18288568 | 900..16 | 4425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:42:17 has no hits.
BS09452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:05 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:01 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:35 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1094 | 7..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:57 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 204..1094 | 7..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:57 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18287684..18288574 | 7..900 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:35 Download gff for
BS09452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14113406..14114296 | 7..900 | 99 | | Minus |
BS09452.complete Sequence
1517 bp assembled on 2009-02-12
> BS09452.complete
GAAGTTATCTGTCGACATGTCCGGTGATTGCAACACGTATTGCCAAAATG
CCTGCGATCCCTGCCAGGCGCCCACGGATTTCTCGCCCTGTCCGCCGAAT
TCAACGTGTCCGCCTTGCGACTGCGGCGACTATGCAGGATGCTGCTACCA
GCAGCCGCCGCGCACCATGCCCATCCTGCCCAAGTCGCACTTCATGCGCT
CCACAGCGCCGCTGGACACGGACACCATATACCGACGATCGTTCTATGCT
AACTGTGGCGACAACATTAGGGCCCGACCCGTAATGCCGTGCTCCCAAAT
ACGAGCATCCACGGCGCCGCTGGAAAAGTGCACCATACAGAAGTTATCCT
ACATGCCACCCTGTCCGGTTAAGCGGACGCCACCCATTGTTCCCATGGAG
AGCGGCCTGCGCTTCGAGGGACCCATCTATGCGATGACCTCGCAGAAGCA
CGACTACGTGCCCAAGGGGATCGTGAAGCGGGATCCCATTAAGCCGCGTG
TGGCTATCTGCACGTCGAATGCACCGATGGAGCGCTGTACTATCCAGAAG
CTGAGCTACATGCCCATCGATGTGTGCCAGAATCCGCCTCCGAAGGCCAT
GGTCCAGGGATCGCACTACTGCAAGCCGGCAGGACCCATGGAGCGCTGCA
CCATCCAAAAGCTGTCCTACATGCCGGTCTGTTTGCCGGCCAAGGAGCCC
ACGCCCTGGGCCGACAAAATACGTTGTGTGCCGCCGCGCTACTCCAATGT
CTGCACCACCTACAACCTAAGCTACATGCCCAACTGCAATGAGGCACGTA
CGGCTCCGGTGACGCCGCTTACCACCTTGCGCTTCTGTGGCAACGACGCC
GGTTCCGGCAGCACGGTGTACAAGCTGAGCTACATGCCCGTGGATGCCTC
CAGGACCAAACCGGCGCCCGTCCTGCCCAGGGACACTTTCTGCCGGCCCT
CAGGACCGCTGGAAAGGTGCACCATTCAAAAGCTGTCCTATCAACCGAAC
TGCACGGAGCGCACTCCTCCGATTCGCCCGATGGAAAATGGTCTGCGATT
CGACGGGCCCATGTATGCGATGACCACTCAGAAACACGATTTTGTGGCCA
AGCCCCACGTGAGGAGGGCTCCGATCATGCCGAGAACGGCCTTCTGCCGG
CCCACTGGAGCCATGGAGCGCTGCACGGTGAACAAGTTGTCGTACATGCC
GGTGGATGTCACCTGTTTCCCACGCGCCGAGTCCGTCCGACCACGACAGG
GATTCTGCCGGAACGAGGGACCCATGGAAAAGTGCACCACATACAAACTC
AGCTACTTGCCGAACTGTGTGCCGCCCAAGGAGCCACTGCCGTGGGCCAG
GTACACATCCTACTGCCGGCCAACCGGACCTATTGAGAAGTGTACCATCC
AGAAACTTAGCTACGGACCGCCAGGTGCCTTCCAGCGCTGCGGAGGTCCT
TGTGGAACTGGCGCTAACGATGGCACCTTTCCCAAAGCCGGCATTTGTTA
GAAGCTTTCTAGACCAT
BS09452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 1485 | CG7131-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-RA | 2040 | CG7131-RA | 210..1695 | 16..1501 | 7430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18287602..18288568 | 982..16 | 4835 | 100 | Minus |
| 3R | 32079331 | 3R | 18287080..18287546 | 1447..981 | 2335 | 100 | Minus |
| 3R | 32079331 | 3R | 18286965..18287022 | 1501..1444 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:50:38 has no hits.
BS09452.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:50 Download gff for
BS09452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 211..1695 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:32 Download gff for
BS09452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 211..1695 | 17..1501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:50 Download gff for
BS09452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7131-RA | 211..1695 | 17..1501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:50 Download gff for
BS09452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18286965..18287020 | 1446..1501 | 100 | <- | Minus |
| 3R | 18287082..18287544 | 983..1445 | 100 | <- | Minus |
| 3R | 18287602..18288567 | 17..982 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:32 Download gff for
BS09452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14112687..14112742 | 1446..1501 | 100 | <- | Minus |
| arm_3R | 14112804..14113266 | 983..1445 | 100 | <- | Minus |
| arm_3R | 14113324..14114289 | 17..982 | 100 | | Minus |
BS09452.pep Sequence
Translation from 16 to 1500
> BS09452.pep
MSGDCNTYCQNACDPCQAPTDFSPCPPNSTCPPCDCGDYAGCCYQQPPRT
MPILPKSHFMRSTAPLDTDTIYRRSFYANCGDNIRARPVMPCSQIRASTA
PLEKCTIQKLSYMPPCPVKRTPPIVPMESGLRFEGPIYAMTSQKHDYVPK
GIVKRDPIKPRVAICTSNAPMERCTIQKLSYMPIDVCQNPPPKAMVQGSH
YCKPAGPMERCTIQKLSYMPVCLPAKEPTPWADKIRCVPPRYSNVCTTYN
LSYMPNCNEARTAPVTPLTTLRFCGNDAGSGSTVYKLSYMPVDASRTKPA
PVLPRDTFCRPSGPLERCTIQKLSYQPNCTERTPPIRPMENGLRFDGPMY
AMTTQKHDFVAKPHVRRAPIMPRTAFCRPTGAMERCTVNKLSYMPVDVTC
FPRAESVRPRQGFCRNEGPMEKCTTYKLSYLPNCVPPKEPLPWARYTSYC
RPTGPIEKCTIQKLSYGPPGAFQRCGGPCGTGANDGTFPKAGIC*
BS09452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7131-PA | 494 | CG7131-PA | 1..494 | 1..494 | 2795 | 100 | Plus |
