Clone Sequence Records
BS09454.3prime Sequence
825 bp (824 high quality bases) assembled on 2006-04-19
> BS09454.3prime
ATGGTCTAGAAAGCTTTTAGTTATCGTTGGAGTTACTCAAGGGATCGCTG
GACTCCTCCTCCTCATCGCCGTCGGAGTCGAAGGCGTTTTCCGGAACGTC
ATACAGACGGATCATCGGCTTGTTGGGATCCTTCATGATCAGATACTTTC
CATCCGGTTGCCTCATCACAAGGTCAATTAGGCAACGCAATACTCCCCAG
GCATTGTCCATGTTCAGGTTGATTTGGGTGGCGAACTCCTGCGGCTTGAA
TTGCTGTGTGCCAAGGATCACGTGACGCAGGTGATCACGCGGATTCATCC
TGGACACATAGCCTAACTTCAGTTGATCGGAACCAGCCAGCACAGCCTCA
ACGGTCCATCGAGCTAGCTTACAAGCATTGTTGCGCAACTCGGAGGCCAA
GACTGCACCGCGCTGGGTGTCCAACTTCTGGCGCCACTCCACACTGTTGG
TCACCTTGGAGTCCCATTCATTCAGCGCCTTGATCGAGAGGAACTGCACG
TCCCCATTGGGTCCTTGGATAACCCCATTGTGCTTGCAGCGAGCAATCAG
CACCACATCGTTGCCCAGATCCCACTGACGGTAGCGATAGCCAATGGAGG
CAAGATCCACGCCTGGCTCCTCGAACGGATTGGGCTCCTCAAACATGAAA
CGTGGCTCTTGGTCGCCAATGCGAAGAACCTGCTGGCTAAAGTTGTGATT
AATTAGAGTGGCCTCCATTGCCAAGCTATGTGCCGAATTGATGGAACCCT
CCTCATCCATCGGAGGTTCTACTGAAGTCTCGTTGACAGTCAGCAAATCA
AATTGATCATTATATCTCTTATCTA
BS09454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-PA | 1656 | CG4810-RA | 848..1656 | 825..17 | 4045 | 100 | Minus |
CG10161-PB | 1683 | eIF-3p66-RB | 1540..1580 | 142..102 | 155 | 95.1 | Minus |
CG10161-PB | 1683 | eIF-3p66-RB | 1404..1488 | 278..194 | 150 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-RA | 2232 | CG4810-RA | 907..1715 | 825..17 | 4045 | 100 | Minus |
eIF-3p66-RB | 2012 | CG10161-RB | 1242..1762 | 592..72 | 755 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12193220..12193884 | 17..681 | 3325 | 100 | Plus |
3R | 32079331 | 3R | 23681642..23682067 | 497..72 | 750 | 78.4 | Minus |
3R | 32079331 | 3R | 12193958..12194105 | 678..825 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:12:24 has no hits.
BS09454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:08 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-PA | 849..1656 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:05 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-PA | 849..1656 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:32 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 908..1722 | 9..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:44 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 908..1722 | 9..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:44 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12193213..12193882 | 9..679 | 99 | <- | Plus |
3R | 12193960..12194104 | 680..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:32 Download gff for
BS09454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8018935..8019604 | 9..679 | 99 | <- | Plus |
arm_3R | 8019682..8019826 | 680..824 | 100 | | Plus |
BS09454.5prime Sequence
901 bp (821 high quality bases) assembled on 2006-04-19
> BS09454.5prime
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGC
ACTAAGGTGTTCTTTAGATAGAGATATNATGATCAATTTGATTTGCTGAC
T
BS09454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-PA | 1656 | CG4810-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG4810-PA | 1656 | CG4810-RA | 854..885 | 870..901 | 141 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-RA | 2232 | CG4810-RA | 60..944 | 17..901 | 4369 | 99.7 | Plus |
eIF-3p66-RB | 2012 | CG10161-RB | 669..1001 | 530..862 | 270 | 72.8 | Plus |
eIF-3p66-RB | 2012 | CG10161-RB | 225..436 | 68..270 | 225 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12194068..12194952 | 901..17 | 4339 | 99.3 | Minus |
3R | 32079331 | 3R | 23680829..23681143 | 530..844 | 255 | 72.1 | Plus |
3R | 32079331 | 3R | 23680298..23680357 | 97..156 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:37:51 has no hits.
BS09454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:09 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:06 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:04 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 54..944 | 11..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:37 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 54..944 | 11..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:37 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12194068..12194958 | 11..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:04 Download gff for
BS09454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8019790..8020680 | 11..901 | 99 | | Minus |
BS09454.complete Sequence
1688 bp assembled on 2007-10-17
GenBank Submission: FJ636423
> BS09454.complete
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGC
ACTAAGGTGTTCTTAGATAAGAGATATAATGATCAATTTGATTTGCTGAC
TGTCAACGAGACTTCAGTAGAACCTCCGATGGATGAGGAGGGTTCCATCA
ATTCGGCACATAGCTTGGCAATGGAGGCCACTCTAATTAATCACAACTTT
AGCCAGCAGGTTCTTCGCATTGGCGACCAAGAGCCACGTTTCATGTTTGA
GGAGCCCAATCCGTTCGAGGAGCCAGGCGTGGATCTTGCCTCCATTGGCT
ATCGCTACCGTCAGTGGGATCTGGGCAACGATGTGGTGCTGATTGCTCGC
TGCAAGCACAATGGGGTTATCCAAGGACCCAATGGGGACGTGCAGTTCCT
CTCGATCAAGGCGCTGAATGAATGGGACTCCAAGGTGACCAACAGTGTGG
AGTGGCGCCAGAAGTTGGACACCCAGCGCGGTGCAGTCTTGGCCTCCGAG
TTGCGCAACAATGCTTGTAAGCTAGCTCGATGGACCGTTGAGGCTGTGCT
GGCTGGTTCCGATCAACTGAAGTTAGGCTATGTGTCCAGGATGAATCCGC
GTGATCACCTGCGTCACGTGATCCTTGGCACACAGCAATTCAAGCCGCAG
GAGTTCGCCACCCAAATCAACCTGAACATGGACAATGCCTGGGGAGTATT
GCGTTGCCTAATTGACCTTGTGATGAGGCAACCGGATGGAAAGTATCTGA
TCATGAAGGATCCCAACAAGCCGATGATCCGTCTGTATGACGTTCCGGAA
AACGCCTTCGACTCCGACGGCGATGAGGAGGAGGAGTCCAGCGATCCCTT
GAGTAACTCCAACGATAACTAAAAGCTTTCTAGACCAT
BS09454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-RA | 1656 | CG4810-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
eIF-3p66-RB | 1683 | CG10161-PB | 517..1610 | 530..1617 | 815 | 71.8 | Plus |
eIF-3p66-RB | 1683 | CG10161-PB | 108..167 | 97..156 | 210 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-RA | 2232 | CG4810-RA | 60..1715 | 17..1672 | 8280 | 100 | Plus |
eIF-3p66-RB | 2012 | CG10161-RB | 669..1762 | 530..1617 | 815 | 71.8 | Plus |
eIF-3p66-RB | 2012 | CG10161-RB | 260..319 | 97..156 | 210 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12193958..12194952 | 1011..17 | 4975 | 100 | Minus |
3R | 32079331 | 3R | 12193220..12193884 | 1672..1008 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 23681642..23682067 | 1192..1617 | 750 | 78.4 | Plus |
3R | 32079331 | 3R | 23680829..23681143 | 530..844 | 255 | 72.1 | Plus |
3R | 32079331 | 3R | 23680298..23680357 | 97..156 | 210 | 90 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:52 has no hits.
BS09454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:11 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 1..1656 | 17..1672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:15 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 54..1722 | 11..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:23 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 60..1713 | 17..1670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:15 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 60..1713 | 17..1670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:56 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4810-RA | 60..1713 | 17..1670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:56 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12193222..12193882 | 1010..1670 | 100 | <- | Minus |
3R | 12193960..12194952 | 17..1009 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:23 Download gff for
BS09454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8018944..8019604 | 1010..1670 | 100 | <- | Minus |
arm_3R | 8019682..8020674 | 17..1009 | 100 | | Minus |
BS09454.pep Sequence
Translation from 16 to 1671
> BS09454.pep
MSNYAPFIKPYVEYNEHGWGPCEVPELDVPYQPFCKSDRLGKICDWTAMV
PEKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQRGRYR
PNMRNNVRSRGRTGRGTPNIASLGGSTAGGATASTTKYGKGRNTRNTQNM
GRRFGRNAPTRIRESSVMVQSDWVSIEEIDFPRLLKLALPNIKDGKDIAT
CGWLEFYDKLYDRVNLRNEKPLQKMDRVVHTVTTTDDPVIRRLSRTMGNV
FATDEILSTIMCCTRSNYSWDVVVEKLGTKVFLDKRYNDQFDLLTVNETS
VEPPMDEEGSINSAHSLAMEATLINHNFSQQVLRIGDQEPRFMFEEPNPF
EEPGVDLASIGYRYRQWDLGNDVVLIARCKHNGVIQGPNGDVQFLSIKAL
NEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQ
LKLGYVSRMNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLID
LVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSDPLSNSND
N*
BS09454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4810-PA | 551 | CG4810-PA | 1..551 | 1..551 | 2945 | 100 | Plus |
eIF-3p66-PB | 560 | CG10161-PB | 9..546 | 2..543 | 1969 | 66.4 | Plus |