Clone BS09454 Report

Search the DGRC for BS09454

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG4810-RA
Protein status:BS09454.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09454.3prime Sequence

825 bp (824 high quality bases) assembled on 2006-04-19

> BS09454.3prime
ATGGTCTAGAAAGCTTTTAGTTATCGTTGGAGTTACTCAAGGGATCGCTG
GACTCCTCCTCCTCATCGCCGTCGGAGTCGAAGGCGTTTTCCGGAACGTC
ATACAGACGGATCATCGGCTTGTTGGGATCCTTCATGATCAGATACTTTC
CATCCGGTTGCCTCATCACAAGGTCAATTAGGCAACGCAATACTCCCCAG
GCATTGTCCATGTTCAGGTTGATTTGGGTGGCGAACTCCTGCGGCTTGAA
TTGCTGTGTGCCAAGGATCACGTGACGCAGGTGATCACGCGGATTCATCC
TGGACACATAGCCTAACTTCAGTTGATCGGAACCAGCCAGCACAGCCTCA
ACGGTCCATCGAGCTAGCTTACAAGCATTGTTGCGCAACTCGGAGGCCAA
GACTGCACCGCGCTGGGTGTCCAACTTCTGGCGCCACTCCACACTGTTGG
TCACCTTGGAGTCCCATTCATTCAGCGCCTTGATCGAGAGGAACTGCACG
TCCCCATTGGGTCCTTGGATAACCCCATTGTGCTTGCAGCGAGCAATCAG
CACCACATCGTTGCCCAGATCCCACTGACGGTAGCGATAGCCAATGGAGG
CAAGATCCACGCCTGGCTCCTCGAACGGATTGGGCTCCTCAAACATGAAA
CGTGGCTCTTGGTCGCCAATGCGAAGAACCTGCTGGCTAAAGTTGTGATT
AATTAGAGTGGCCTCCATTGCCAAGCTATGTGCCGAATTGATGGAACCCT
CCTCATCCATCGGAGGTTCTACTGAAGTCTCGTTGACAGTCAGCAAATCA
AATTGATCATTATATCTCTTATCTA

BS09454.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 1656 CG4810-RA 848..1656 825..17 4045 100 Minus
CG10161-PB 1683 eIF-3p66-RB 1540..1580 142..102 155 95.1 Minus
CG10161-PB 1683 eIF-3p66-RB 1404..1488 278..194 150 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 907..1715 825..17 4045 100 Minus
eIF-3p66-RB 2012 CG10161-RB 1242..1762 592..72 755 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12193220..12193884 17..681 3325 100 Plus
3R 32079331 3R 23681642..23682067 497..72 750 78.4 Minus
3R 32079331 3R 12193958..12194105 678..825 740 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:12:24 has no hits.

BS09454.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:08 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 849..1656 17..824 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:05 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 849..1656 17..824 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:59:32 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 908..1722 9..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:44 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 908..1722 9..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:44 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12193213..12193882 9..679 99 <- Plus
3R 12193960..12194104 680..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:59:32 Download gff for BS09454.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8018935..8019604 9..679 99 <- Plus
arm_3R 8019682..8019826 680..824 100   Plus

BS09454.5prime Sequence

901 bp (821 high quality bases) assembled on 2006-04-19

> BS09454.5prime
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGC
ACTAAGGTGTTCTTTAGATAGAGATATNATGATCAATTTGATTTGCTGAC
T

BS09454.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 1656 CG4810-RA 1..848 17..864 4240 100 Plus
CG4810-PA 1656 CG4810-RA 854..885 870..901 141 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 60..944 17..901 4369 99.7 Plus
eIF-3p66-RB 2012 CG10161-RB 669..1001 530..862 270 72.8 Plus
eIF-3p66-RB 2012 CG10161-RB 225..436 68..270 225 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12194068..12194952 901..17 4339 99.3 Minus
3R 32079331 3R 23680829..23681143 530..844 255 72.1 Plus
3R 32079331 3R 23680298..23680357 97..156 210 90 Plus
Blast to na_te.dros performed on 2015-02-13 02:37:51 has no hits.

BS09454.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:09 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:06 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-PA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:04 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..944 11..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:37 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..944 11..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:37 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12194068..12194958 11..901 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:04 Download gff for BS09454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8019790..8020680 11..901 99   Minus

BS09454.complete Sequence

1688 bp assembled on 2007-10-17

GenBank Submission: FJ636423

> BS09454.complete
GAAGTTATCAGTCGACATGTCCAACTACGCACCCTTTATCAAGCCCTATG
TGGAGTACAACGAGCACGGCTGGGGTCCTTGCGAGGTACCCGAATTGGAT
GTGCCCTACCAGCCGTTCTGCAAAAGTGATCGCCTGGGCAAGATCTGCGA
CTGGACTGCGATGGTGCCCGAGAAGAAGTTCCCCAGTAAATACGCCTCGA
CCTTTGGCAACAACAGTCAGTACGCATACTTCTACGAGGACGATGACTCC
ACCTTCCATTTGGTGGACACCACTGGATCGAAGGCCACCAAGCCCTATCA
GCGGGGACGCTATAGACCCAATATGCGCAACAATGTGAGGAGCAGGGGTC
GCACGGGGCGTGGCACTCCGAATATAGCAAGTCTCGGGGGATCCACGGCT
GGAGGCGCAACTGCCAGTACCACCAAGTACGGAAAGGGTCGCAATACACG
CAACACGCAGAATATGGGTCGCAGATTCGGTCGCAATGCTCCCACCAGAA
TCCGCGAGAGCTCAGTGATGGTGCAATCGGATTGGGTTTCGATCGAGGAG
ATTGATTTTCCACGCCTTCTCAAGCTGGCACTTCCCAATATTAAAGATGG
TAAGGACATTGCCACCTGCGGATGGCTGGAATTTTATGATAAGTTATACG
ATCGAGTCAACTTACGCAATGAAAAACCATTGCAAAAGATGGATCGTGTT
GTGCACACCGTGACGACCACGGATGATCCGGTTATTCGTCGTCTTTCGAG
GACCATGGGCAATGTCTTTGCCACCGACGAAATCTTGTCCACCATAATGT
GCTGCACACGCTCCAATTACTCTTGGGATGTGGTAGTCGAGAAATTGGGC
ACTAAGGTGTTCTTAGATAAGAGATATAATGATCAATTTGATTTGCTGAC
TGTCAACGAGACTTCAGTAGAACCTCCGATGGATGAGGAGGGTTCCATCA
ATTCGGCACATAGCTTGGCAATGGAGGCCACTCTAATTAATCACAACTTT
AGCCAGCAGGTTCTTCGCATTGGCGACCAAGAGCCACGTTTCATGTTTGA
GGAGCCCAATCCGTTCGAGGAGCCAGGCGTGGATCTTGCCTCCATTGGCT
ATCGCTACCGTCAGTGGGATCTGGGCAACGATGTGGTGCTGATTGCTCGC
TGCAAGCACAATGGGGTTATCCAAGGACCCAATGGGGACGTGCAGTTCCT
CTCGATCAAGGCGCTGAATGAATGGGACTCCAAGGTGACCAACAGTGTGG
AGTGGCGCCAGAAGTTGGACACCCAGCGCGGTGCAGTCTTGGCCTCCGAG
TTGCGCAACAATGCTTGTAAGCTAGCTCGATGGACCGTTGAGGCTGTGCT
GGCTGGTTCCGATCAACTGAAGTTAGGCTATGTGTCCAGGATGAATCCGC
GTGATCACCTGCGTCACGTGATCCTTGGCACACAGCAATTCAAGCCGCAG
GAGTTCGCCACCCAAATCAACCTGAACATGGACAATGCCTGGGGAGTATT
GCGTTGCCTAATTGACCTTGTGATGAGGCAACCGGATGGAAAGTATCTGA
TCATGAAGGATCCCAACAAGCCGATGATCCGTCTGTATGACGTTCCGGAA
AACGCCTTCGACTCCGACGGCGATGAGGAGGAGGAGTCCAGCGATCCCTT
GAGTAACTCCAACGATAACTAAAAGCTTTCTAGACCAT

BS09454.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 1656 CG4810-PA 1..1656 17..1672 8280 100 Plus
eIF-3p66-RB 1683 CG10161-PB 517..1610 530..1617 815 71.8 Plus
eIF-3p66-RB 1683 CG10161-PB 108..167 97..156 210 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-RA 2232 CG4810-RA 60..1715 17..1672 8280 100 Plus
eIF-3p66-RB 2012 CG10161-RB 669..1762 530..1617 815 71.8 Plus
eIF-3p66-RB 2012 CG10161-RB 260..319 97..156 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12193958..12194952 1011..17 4975 100 Minus
3R 32079331 3R 12193220..12193884 1672..1008 3325 100 Minus
3R 32079331 3R 23681642..23682067 1192..1617 750 78.4 Plus
3R 32079331 3R 23680829..23681143 530..844 255 72.1 Plus
3R 32079331 3R 23680298..23680357 97..156 210 90 Plus
Blast to na_te.dros performed on 2014-11-27 23:32:52 has no hits.

BS09454.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:11 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 1..1656 17..1672 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:15 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 54..1722 11..1680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:23 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 60..1713 17..1670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:15 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 60..1713 17..1670 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:56 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
CG4810-RA 60..1713 17..1670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:56 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12193222..12193882 1010..1670 100 <- Minus
3R 12193960..12194952 17..1009 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:23 Download gff for BS09454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8018944..8019604 1010..1670 100 <- Minus
arm_3R 8019682..8020674 17..1009 100   Minus

BS09454.pep Sequence

Translation from 16 to 1671

> BS09454.pep
MSNYAPFIKPYVEYNEHGWGPCEVPELDVPYQPFCKSDRLGKICDWTAMV
PEKKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQRGRYR
PNMRNNVRSRGRTGRGTPNIASLGGSTAGGATASTTKYGKGRNTRNTQNM
GRRFGRNAPTRIRESSVMVQSDWVSIEEIDFPRLLKLALPNIKDGKDIAT
CGWLEFYDKLYDRVNLRNEKPLQKMDRVVHTVTTTDDPVIRRLSRTMGNV
FATDEILSTIMCCTRSNYSWDVVVEKLGTKVFLDKRYNDQFDLLTVNETS
VEPPMDEEGSINSAHSLAMEATLINHNFSQQVLRIGDQEPRFMFEEPNPF
EEPGVDLASIGYRYRQWDLGNDVVLIARCKHNGVIQGPNGDVQFLSIKAL
NEWDSKVTNSVEWRQKLDTQRGAVLASELRNNACKLARWTVEAVLAGSDQ
LKLGYVSRMNPRDHLRHVILGTQQFKPQEFATQINLNMDNAWGVLRCLID
LVMRQPDGKYLIMKDPNKPMIRLYDVPENAFDSDGDEEEESSDPLSNSND
N*

BS09454.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4810-PA 551 CG4810-PA 1..551 1..551 2945 100 Plus
eIF-3p66-PB 560 CG10161-PB 9..546 2..543 1969 66.4 Plus