Clone Sequence Records
BS09457.complete Sequence
1823 bp assembled on 2009-12-07
GenBank Submission: KX800340
> BS09457.complete
GAAGTTATCAGTCGACATGGTCGACGAAAAGCTACCACCAAGCAAGGAAC
CGGCTGAACGGCCTCCAGACCAGACCACCCCCGGAAACGCGGCTACCCGA
TTCGGCTTGGAGGATCACGAGGCCACTCAGCAGGATGCCCGGGTGAACAC
ACTGCGCCAAGCAGAAGAGCGACGTGGTTCAATGGTGCCTCCCGACAAGC
GGGCGATGTCCATGAAGATGTCGCAAGCGCGCTTACACACCATAAATGAT
CCGAATCGAACTGGCACACATTCTGCTGAAGCGACGACACCACCGGCCAA
GCCTGCGGTCAACATTTCGTCGCGGAGTTCTTTGGTAAGAGGTGTGGCGC
CAGATCTTCCACCCAAGCCGCAGCGCCCCTCCGATAGCGAGGCCGATCTT
GAATCGTCCGATGTGGATAGACCATCGGCAAAAAGGAAATCGGAGAAAGC
TCTAGCTGATGTGTCAACTTCGTCATCGGAGGAATCAGAGAAACGCGTCC
CACCTGCTGCTGCATCGGCGCCTCCTCCAGCACAAGCTGAGCCTCAGTGG
AAATCAATTGATTTTGCAGCATCGGAAGCTGAGCCCATTGCCCCGCCGGC
GCCTAGGCCGGAGGATGTACCATTGCCCCCACCCATGATGTCGTCTTTGC
CGACGGATGGAAGCCCCGACGATGTGCAGAGCATAAACAGCAAGTTGACC
AATACCGACATCACTTTTCACCCATCCAAGGTATTCGCCTCGAAGGCAAC
TAACACTTCGGGCATGCTCTACTCCGACGAGGAAAATGAGCCGGAGGAAG
AGGAATTTCCAAAGCTTCCGGATCAGTTTTCCGCCAGCGATCTGGACACT
TTGTTCCTGCTGGCTTGTCGGGAGGTGAAGAAGGCTGGTGCTATCGCTCT
TGCGGAAAACAAAAAGAACCAGGAGTACACCACCAAGAAGCACACGAATG
ATATCGTCACTCCCACCGACAACATTGTCGAGGAGTCTTTCATTAAGGCC
ATCAGCTCACGGTATCCCAATCACCAATTTATTGCCGAAGAGAGAATTTC
AAAGTCGGAGACTGGTATGGTGACCCTGACCGATGACCCCACCTGGATAA
TCGATCCCATTGATGGCACCATGAACTTTGTCCACCACTTTCCGTACTAC
TGCATCTCCGTGGCCTATTTGGTAAATCAGGAGACCCAGTTTGGTATTAT
CTATAATCCGCCCATGAAGAATATGTACACGGCCCAACTGGGCAAGGGTG
CTCAAATGAACGGCGAGATGATAAGGACCACTGGCCAAACCAACCTCTCC
GCGGCCATGGTTCTACAGGAGTACAGCTCGGGCAGCAATGAGGCGCGTAA
CCAAGTGGCCACTGAAAATTCCCAGCGACTGGTAAAGAAAACCCATGCGA
TGCGCTCTATTGGATCCTCCGCCATGTGCTTGGCAATGGTCGCCTCCGGA
GTGGCGGATGCCTTCTACAACTTTGGGCTGCACGTTTGGGATATGGCAGC
AGGCGCTTTGATAGTCACGGAGGCCGGAGGAGTGGTAATGGATCCGGCCG
GAGAGGAGTTGGACATTATGTCCCGCCGCTGCCTCGCTGCCTCTACTGAC
TACCTTGCCCTCGAATTGGGTAACTGCCTGCAGCAGAATTATCCATCTCC
ACGTGACGACGAGCCGCGTTCCGTTAACCCCAATGAGTACGGGCCTGCTC
CGGAGACCAGGGACTTTACCAGCCAAACGGACTTCCCCGATTCGGATACC
CCAGAAACCACTGACACCGAAATAGGCGGCGAAAAATCAGCGACGCCAGC
TAACTAAAAGCTTTCTAGACCAT
BS09457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 1791 | CG9389-PA | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| CG9391-RC | 837 | CG9391-PC | 250..337 | 1076..1163 | 260 | 86.4 | Plus |
| CG9391-RA | 837 | CG9391-PA | 250..337 | 1076..1163 | 260 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 2043 | CG9389-RA | 155..1945 | 17..1807 | 8955 | 100 | Plus |
| CG9391-RC | 1171 | CG9391-RC | 423..510 | 1076..1163 | 260 | 86.4 | Plus |
| CG9391-RA | 1104 | CG9391-RA | 356..443 | 1076..1163 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21269417..21270426 | 1026..17 | 5050 | 100 | Minus |
| 3L | 28110227 | 3L | 21268490..21268898 | 1807..1399 | 2045 | 100 | Minus |
| 3L | 28110227 | 3L | 21268966..21269338 | 1399..1027 | 1865 | 100 | Minus |
| 3L | 28110227 | 3L | 21267402..21267489 | 1163..1076 | 260 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:10:04 has no hits.
BS09457.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:24 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1943 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:37 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1943 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:08 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1943 | 17..1805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:26 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 155..1943 | 17..1805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:26 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21268967..21269338 | 1027..1398 | 100 | <- | Minus |
| 3L | 21268492..21268898 | 1399..1805 | 100 | <- | Minus |
| 3L | 21269417..21270426 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:37 Download gff for
BS09457.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21262067..21262438 | 1027..1398 | 100 | <- | Minus |
| arm_3L | 21261592..21261998 | 1399..1805 | 100 | <- | Minus |
| arm_3L | 21262517..21263526 | 17..1026 | 100 | | Minus |
BS09457.3prime Sequence
912 bp (791 high quality bases) assembled on 2006-04-19
> BS09457.3prime
ATGGTCTAGAAAGCTTTTAGTTAGCTGGCGTCGCTGATTTTTCGCCGCCT
ATTTCGGTGTCAGTGGTTTCTGGGGTATCCGAATCGGGGAAGTCCGTTTG
GCTGGTAAAGTCCCTGGTCTCCGGAGCAGGCCCGTACTCATTGGGGTTAA
CGGAACGCGGCTCGTCGTCACGTGGAGATGGATAATTCTGCTGCAGGCAG
TTACCCAATTCGAGGGCAAGGTAGTCAGTAGAGGCAGCGAGGCAGCGGCG
GGACATAATGTCCAACTCCTCTCCGGCCGGATCCATTACCACTCCTCCGG
CCTCCGTGACTATCAAAGCGCCTGCTGCCATATCCCAAACGTGCAGCCCA
AAGTTGTAGAAGGCATCCGCCACTCCGGAGGCGACCATTGCCAAGCACAT
GGCGGAGGATCCAATAGAGCGCATCGCATGGGTTTTCTTTACCAGTCGCT
GGGAATTTTCAGTGGCCACTTGGTTACGCGCCTCATTGCTGCCCGAGCTG
TACTCCTGTAGAACCATGGCCGCGGAGAGGTTGGTTTGGCCAGTGGTCCT
TATCATCTCGCCGTTCATTTGAGCACCCTTGCCCAGTTGGGCCGTGTACA
TATTCTTCATGGGCGGATTATAGATAATACCAAACTGGGTCTCCTGATTT
ACCAAATAGGCCACGGAGATGCAGTAGTACGGAAAGTGGTGGACAAAGTT
CATGGTGCCATCAATGGGATCGATTATCCAGGTGGGGTCATCGGTCAGGG
TCACCATACCAGTCTCCGACTTTGAAATTCTCTCTTCGGCAATAAATTGG
TGATTGGGATACCGTGAGCTGATGGCCTTAATGAAAGACTCCTCGACAAT
GTTGTCGGTGGGAGTGACGATATCATTCGTGTGCTTCTTGGTGGTGTACT
CCTGGTTCTTTT
BS09457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-PA | 1791 | CG9389-RA | 896..1791 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 2043 | CG9389-RA | 1050..1945 | 912..17 | 4480 | 100 | Minus |
| CG9391-RC | 1171 | CG9391-RC | 423..510 | 748..661 | 260 | 86.4 | Minus |
| CG9391-RA | 1104 | CG9391-RA | 356..443 | 748..661 | 260 | 86.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21268490..21268898 | 17..425 | 2045 | 100 | Plus |
| 3L | 28110227 | 3L | 21268966..21269338 | 425..797 | 1865 | 100 | Plus |
| 3L | 28110227 | 3L | 21269417..21269531 | 798..912 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 21267402..21267489 | 661..748 | 260 | 86.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:30:29 has no hits.
BS09457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:16 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-PA | 896..1791 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:13 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-PA | 896..1791 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:27:56 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 1050..1945 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:39 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 1050..1945 | 17..912 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:39 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21268967..21269338 | 426..797 | 100 | <- | Plus |
| 3L | 21269417..21269531 | 798..912 | 100 | | Plus |
| 3L | 21268490..21268898 | 17..425 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:27:56 Download gff for
BS09457.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21261590..21261998 | 17..425 | 100 | <- | Plus |
| arm_3L | 21262067..21262438 | 426..797 | 100 | <- | Plus |
| arm_3L | 21262517..21262631 | 798..912 | 100 | | Plus |
BS09457.5prime Sequence
878 bp (867 high quality bases) assembled on 2006-04-19
> BS09457.5prime
GAAGTTATCAGTCGACATGGTCGACGAAAAGCTACCACCAAGCAAGGAAC
CGGCTGAACGGCCTCCAGACCAGACCACCCCCGGAAACGCGGCTACCCGA
TTCGGCTTGGAGGATCACGAGGCCACTCAGCAGGATGCCCGGGTGAACAC
ACTGCGCCAAGCAGAAGAGCGACGTGGTTCAATGGTGCCTCCCGACAAGC
GGGCGATGTCCATGAAGATGTCGCAAGCGCGCTTACACACCATAAATGAT
CCGAATCGAACTGGCACACATTCTGCTGAAGCGACGACACCACCGGCCAA
GCCTGCGGTCAACATTTCGTCGCGGAGTTCTTTGGTAAGAGGTGTGGCGC
CAGATCTTCCACCCAAGCCGCAGCGCCCCTCCGATAGCGAGGCCGATCTT
GAATCGTCCGATGTGGATAGACCATCGGCAAAAAGGAAATCGGAGAAAGC
TCTAGCTGATGTGTCAACTTCGTCATCGGAGGAATCAGAGAAACGCGTCC
CACCTGCTGCTGCATCGGCGCCTCCTCCAGCACAAGCTGAGCCTCAGTGG
AAATCAATTGATTTTGCAGCATCGGAAGCTGAGCCCATTGCCCCGCCGGC
GCCTAGGCCGGAGGATGTACCATTGCCCCCACCCATGATGTCGTCTTTGC
CGACGGATGGAAGCCCCGACGATGTGCAGAGCATAAACAGCAAGTTGACC
AATACCGACATCACTTTTCACCCATCCAAGGTATTCGCCTCGAAGGCAAC
TAACACTTCGGGCATGCTCTACTCCGACGAGGAAAATGAGCCGGAGGAAG
AGGAATTTCCAAAGCTTCCGGATCAGTTTTCCGCCAGCGATCTGGACACT
TTGTTCCTGCTGGCTTGTCGGGAGGTGA
BS09457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-PA | 1791 | CG9389-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-RA | 2043 | CG9389-RA | 155..1016 | 17..878 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21269565..21270426 | 878..17 | 4310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:36:42 has no hits.
BS09457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:17 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:15 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:03 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 148..1015 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:38 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9389-RA | 148..1015 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:38 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21269566..21270430 | 9..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:03 Download gff for
BS09457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21262666..21263530 | 9..877 | 99 | | Minus |
BS09457.pep Sequence
Translation from 16 to 1806
> BS09457.pep
MVDEKLPPSKEPAERPPDQTTPGNAATRFGLEDHEATQQDARVNTLRQAE
ERRGSMVPPDKRAMSMKMSQARLHTINDPNRTGTHSAEATTPPAKPAVNI
SSRSSLVRGVAPDLPPKPQRPSDSEADLESSDVDRPSAKRKSEKALADVS
TSSSEESEKRVPPAAASAPPPAQAEPQWKSIDFAASEAEPIAPPAPRPED
VPLPPPMMSSLPTDGSPDDVQSINSKLTNTDITFHPSKVFASKATNTSGM
LYSDEENEPEEEEFPKLPDQFSASDLDTLFLLACREVKKAGAIALAENKK
NQEYTTKKHTNDIVTPTDNIVEESFIKAISSRYPNHQFIAEERISKSETG
MVTLTDDPTWIIDPIDGTMNFVHHFPYYCISVAYLVNQETQFGIIYNPPM
KNMYTAQLGKGAQMNGEMIRTTGQTNLSAAMVLQEYSSGSNEARNQVATE
NSQRLVKKTHAMRSIGSSAMCLAMVASGVADAFYNFGLHVWDMAAGALIV
TEAGGVVMDPAGEELDIMSRRCLAASTDYLALELGNCLQQNYPSPRDDEP
RSVNPNEYGPAPETRDFTSQTDFPDSDTPETTDTEIGGEKSATPAN*
BS09457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9389-PA | 596 | CG9389-PA | 1..596 | 1..596 | 3094 | 100 | Plus |
| CG9391-PC | 278 | CG9391-PC | 6..278 | 275..548 | 667 | 47.8 | Plus |
| CG9391-PA | 278 | CG9391-PA | 6..278 | 275..548 | 667 | 47.8 | Plus |
| CG17029-PB | 284 | CG17029-PB | 6..274 | 272..540 | 435 | 35.9 | Plus |
| CG17029-PA | 284 | CG17029-PA | 6..274 | 272..540 | 435 | 35.9 | Plus |
