Clone BS09464 Report

Search the DGRC for BS09464

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptsqa-RB
Protein status:BS09464.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09464.3prime Sequence

940 bp (847 high quality bases) assembled on 2006-04-19

> BS09464.3prime
ATGGTCTAGAAAGCTTTCATTTGCCGTGGATGAGGGCGTGTCGGTCGCGC
TGTCGCTGGGATCCGTACTCACCTCTGGAGGAGGAAAGGCTGTCCGCGCC
GTGGGTCCTCCTGGGATGGGGGTAGCTCGTCTCGCTCAGCGGAGCAATCA
CATTCCCCTCCACGTCGAACACGTACGGACTGTTCGGATGCGTCTCCCAG
CGCACGATGAAGTTCTTAAGGTTGTCCTTCGTGGCATCCAGTTCTTTGTT
CTCAAGTTCAGCGTCGCCGCAGAGATTGGCCAGCTCCTCGTCCTGCTGCT
GGTCTTTCTGCTTCGCCTGCTGCACGGCAACCTCTTCCTCGTCGTCTTCG
TCCTCAATGGTTTCCGTGGAGTCCTCGGAGGATTCCGAGGGAGCTGTCAC
CGGAGACACAGACTTCAGGCGCGACTTCGACGCCGCGGAGGCGGCCTTTG
TGATGGGCGTGGCCGTGGCGGCGGTGGCCGGCCGCTGCTGAAGCCATTTG
TGCTTCATGCACTCGGCGGCTGTCATCCGGGTGCTCAGGTCCTTGGCCAG
CAGCTTGGCTATGAAATCCAGACACTCGGGGGATATGCCATTAAAGCATT
CATCCTCGAAGTCGTATTTTGCAATGGTTACATTTGACATTGTTTCAATG
TCGTTCTCGCCCATGAAAGGCGACAGTCCTGAGATGAGCACATAGCATAT
AACGCCAACACTCCACATATCTGTTCCATACGATATACAGTCAAAGTTCA
CAACTTCTGGCGCCACAAATTCCGGAGTGCCGAAGAGAACTCTGAGTCGC
TTATCAGGATCAAATTTACGAGCCAGTCCGAAGTCAATGATCTTGATGCG
GTTGCCCTTCTGTGTGAGCACCAAAATGTTTTCGGGCTTCAGATCGAGGT
GGACTATTCCATTGCCGTGGATGAAGGCCATGGCCTCGCA

BS09464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1776-PA 1341 CG1776-RA 418..1341 940..17 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 2057 CG42347-RB 794..1717 940..17 4620 100 Minus
sqa-RD 6062 CG42347-RD 3642..4509 940..73 4340 100 Minus
sqa-RC 3214 CG42347-RC 794..1661 940..73 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9719466..9719750 251..535 1425 100 Plus
2R 25286936 2R 9718997..9719232 17..252 1180 100 Plus
2R 25286936 2R 9719819..9719971 534..686 765 100 Plus
2R 25286936 2R 9721018..9721169 789..940 760 100 Plus
2R 25286936 2R 9720662..9720765 687..790 520 100 Plus
Blast to na_te.dros performed 2015-02-10 18:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 655..584 135 65.3 Minus

BS09464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:30 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 419..1341 17..939 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:33 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 419..1341 17..939 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:59 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 795..1720 13..939 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:43 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 795..1720 13..939 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:43 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9719466..9719748 251..533 100 <- Plus
2R 9719819..9719971 534..686 100 <- Plus
2R 9720662..9720765 687..790 100 <- Plus
2R 9721020..9721168 791..939 100   Plus
2R 9718994..9719230 13..250 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:59 Download gff for BS09464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5606499..5606735 13..250 99 <- Plus
arm_2R 5606971..5607253 251..533 100 <- Plus
arm_2R 5607324..5607476 534..686 100 <- Plus
arm_2R 5608167..5608270 687..790 100 <- Plus
arm_2R 5608525..5608673 791..939 100   Plus

BS09464.5prime Sequence

868 bp (814 high quality bases) assembled on 2006-04-19

> BS09464.5prime
GAAGTTATCAGTCGACATGATCTATATAGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGGCCAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATG

BS09464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1776-PA 1341 CG1776-RA 1..852 17..868 4210 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RD 6062 CG42347-RD 3225..4076 17..868 4230 99.8 Plus
sqa-RC 3214 CG42347-RC 377..1228 17..868 4230 99.8 Plus
sqa-RB 2057 CG42347-RB 377..1228 17..868 4230 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9721018..9721257 585..346 1200 100 Minus
2R 25286936 2R 9723540..9723744 345..141 1025 100 Minus
2R 25286936 2R 9719819..9719971 840..688 735 98.7 Minus
2R 25286936 2R 9720662..9720765 687..584 520 100 Minus
2R 25286936 2R 9723829..9723920 141..50 460 100 Minus
Blast to na_te.dros performed 2015-02-12 04:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 719..790 135 65.3 Plus

BS09464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:31 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:35 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1776-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:32 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1228 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:18 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 370..1228 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:18 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9719721..9719748 841..868 100 <- Minus
2R 9719819..9719971 688..840 98 <- Minus
2R 9720662..9720765 584..687 100 <- Minus
2R 9721020..9721257 346..583 100 <- Minus
2R 9723540..9723743 142..345 100 <- Minus
2R 9723829..9723919 51..141 100 <- Minus
2R 9744864..9744904 9..50 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:32 Download gff for BS09464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5607226..5607253 841..868 100 <- Minus
arm_2R 5607324..5607476 688..840 98 <- Minus
arm_2R 5608167..5608270 584..687 100 <- Minus
arm_2R 5608525..5608762 346..583 100 <- Minus
arm_2R 5611045..5611248 142..345 100 <- Minus
arm_2R 5611334..5611424 51..141 100 <- Minus
arm_2R 5632369..5632409 9..50 92   Minus

BS09464.complete Sequence

1373 bp assembled on 2007-10-17

GenBank Submission: FJ636424

> BS09464.complete
GAAGTTATCAGTCGACATGATCTATATAGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCACAAATGGCTTCAGCAGCGGCCGGCCAC
CGCCGCCACGGCCACGCCCATCACAAAGGCCGCCTCCGCGGCGTCGAAGT
CGCGCCTGAAGTCTGTGTCTCCGGTGACAGCTCCCTCGGAATCCTCCGAG
GACTCCACGGAAACCATTGAGGACGAAGACGACGAGGAAGAGGTTGCCGT
GCAGCAGGCGAAGCAGAAAGACCAGCAGCAGGACGAGGAGCTGGCCAATC
TCTGCGGCGACGCTGAACTTGAGAACAAAGAACTGGATGCCACGAAGGAC
AACCTTAAGAACTTCATCGTGCGCTGGGAGACGCATCCGAACAGTCCGTA
CGTGTTCGACGTGGAGGGGAATGTGATTGCTCCGCTGAGCGAGACGAGCT
ACCCCCATCCCAGGAGGACCCACGGCGCGGACAGCCTTTCCTCCTCCAGA
GGTGAGTACGGATCCCAGCGACAGCGCGACCGACACGCCCTCATCCACGG
CAAATGAAAGCTTTCTAGACCAT

BS09464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 1341 CG42347-PB 1..1341 17..1357 6705 100 Plus
sqa-RD 2667 CG42347-PD 1..1285 17..1301 6425 100 Plus
sqa-RC 2667 CG42347-PC 1..1285 17..1301 6425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-RB 2057 CG42347-RB 377..1717 17..1357 6705 100 Plus
sqa-RD 6062 CG42347-RD 3225..4509 17..1301 6425 100 Plus
sqa-RC 3214 CG42347-RC 377..1661 17..1301 6425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9719466..9719750 1123..839 1425 100 Minus
2R 25286936 2R 9721018..9721257 585..346 1200 100 Minus
2R 25286936 2R 9718997..9719232 1357..1122 1180 100 Minus
2R 25286936 2R 9723540..9723744 345..141 1025 100 Minus
2R 25286936 2R 9719819..9719971 840..688 765 100 Minus
2R 25286936 2R 9720662..9720765 687..584 520 100 Minus
2R 25286936 2R 9723829..9723920 141..50 460 100 Minus
Blast to na_te.dros performed 2014-11-26 21:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4230..4301 719..790 135 65.3 Plus

BS09464.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:14 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 1..1341 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:16 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 370..1720 9..1361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:29 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 377..1716 17..1356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:01 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
CG42347-RB 377..1716 17..1356 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:44 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
sqa-RB 377..1716 17..1356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:44 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9723540..9723743 142..345 100 <- Minus
2R 9723829..9723919 51..141 100 <- Minus
2R 9744864..9744897 17..50 100   Minus
2R 9721020..9721257 346..583 100 <- Minus
2R 9719466..9719748 841..1123 100 <- Minus
2R 9719819..9719971 688..840 100 <- Minus
2R 9718998..9719230 1124..1356 100 <- Minus
2R 9720662..9720765 584..687 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:29 Download gff for BS09464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5606503..5606735 1124..1356 100 <- Minus
arm_2R 5606971..5607253 841..1123 100 <- Minus
arm_2R 5607324..5607476 688..840 100 <- Minus
arm_2R 5608167..5608270 584..687 100 <- Minus
arm_2R 5608525..5608762 346..583 100 <- Minus
arm_2R 5611045..5611248 142..345 100 <- Minus
arm_2R 5611334..5611424 51..141 100 <- Minus
arm_2R 5632369..5632402 17..50 100   Minus

BS09464.pep Sequence

Translation from 16 to 1356

> BS09464.pep
MIYIDDSEPEGVLEPAFPMRDVTINRNVDAHKHYDVLGEVGRGKFGTVYK
CRDKANGLQLAAKFVPIPKREDKRNVEREVEIMNSLQHHLIIQLYAAYEY
QKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNG
IVHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAP
EVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDF
EDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATAT
PITKAASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQ
KDQQQDEELANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVE
GNVIAPLSETSYPHPRRTHGADSLSSSRGEYGSQRQRDRHALIHGK*

BS09464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
sqa-PB 446 CG1776-PA 1..446 1..446 2326 100 Plus
sqa-PD 888 CG42347-PD 1..428 1..428 2228 100 Plus
sqa-PC 888 CG42347-PC 1..428 1..428 2228 100 Plus
Strn-Mlck-PN 602 CG44162-PN 261..538 17..293 743 48.9 Plus
Strn-Mlck-PG 732 CG44162-PG 133..410 17..293 743 48.9 Plus