Clone Sequence Records
BS09464.3prime Sequence
940 bp (847 high quality bases) assembled on 2006-04-19
> BS09464.3prime
ATGGTCTAGAAAGCTTTCATTTGCCGTGGATGAGGGCGTGTCGGTCGCGC
TGTCGCTGGGATCCGTACTCACCTCTGGAGGAGGAAAGGCTGTCCGCGCC
GTGGGTCCTCCTGGGATGGGGGTAGCTCGTCTCGCTCAGCGGAGCAATCA
CATTCCCCTCCACGTCGAACACGTACGGACTGTTCGGATGCGTCTCCCAG
CGCACGATGAAGTTCTTAAGGTTGTCCTTCGTGGCATCCAGTTCTTTGTT
CTCAAGTTCAGCGTCGCCGCAGAGATTGGCCAGCTCCTCGTCCTGCTGCT
GGTCTTTCTGCTTCGCCTGCTGCACGGCAACCTCTTCCTCGTCGTCTTCG
TCCTCAATGGTTTCCGTGGAGTCCTCGGAGGATTCCGAGGGAGCTGTCAC
CGGAGACACAGACTTCAGGCGCGACTTCGACGCCGCGGAGGCGGCCTTTG
TGATGGGCGTGGCCGTGGCGGCGGTGGCCGGCCGCTGCTGAAGCCATTTG
TGCTTCATGCACTCGGCGGCTGTCATCCGGGTGCTCAGGTCCTTGGCCAG
CAGCTTGGCTATGAAATCCAGACACTCGGGGGATATGCCATTAAAGCATT
CATCCTCGAAGTCGTATTTTGCAATGGTTACATTTGACATTGTTTCAATG
TCGTTCTCGCCCATGAAAGGCGACAGTCCTGAGATGAGCACATAGCATAT
AACGCCAACACTCCACATATCTGTTCCATACGATATACAGTCAAAGTTCA
CAACTTCTGGCGCCACAAATTCCGGAGTGCCGAAGAGAACTCTGAGTCGC
TTATCAGGATCAAATTTACGAGCCAGTCCGAAGTCAATGATCTTGATGCG
GTTGCCCTTCTGTGTGAGCACCAAAATGTTTTCGGGCTTCAGATCGAGGT
GGACTATTCCATTGCCGTGGATGAAGGCCATGGCCTCGCA
BS09464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1776-PA | 1341 | CG1776-RA | 418..1341 | 940..17 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 2057 | CG42347-RB | 794..1717 | 940..17 | 4620 | 100 | Minus |
sqa-RD | 6062 | CG42347-RD | 3642..4509 | 940..73 | 4340 | 100 | Minus |
sqa-RC | 3214 | CG42347-RC | 794..1661 | 940..73 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9719466..9719750 | 251..535 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 9718997..9719232 | 17..252 | 1180 | 100 | Plus |
2R | 25286936 | 2R | 9719819..9719971 | 534..686 | 765 | 100 | Plus |
2R | 25286936 | 2R | 9721018..9721169 | 789..940 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9720662..9720765 | 687..790 | 520 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 655..584 | 135 | 65.3 | Minus |
BS09464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:30 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 419..1341 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:33 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 419..1341 | 17..939 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:59 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 795..1720 | 13..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:43 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 795..1720 | 13..939 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:43 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9719466..9719748 | 251..533 | 100 | <- | Plus |
2R | 9719819..9719971 | 534..686 | 100 | <- | Plus |
2R | 9720662..9720765 | 687..790 | 100 | <- | Plus |
2R | 9721020..9721168 | 791..939 | 100 | | Plus |
2R | 9718994..9719230 | 13..250 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:59 Download gff for
BS09464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5606499..5606735 | 13..250 | 99 | <- | Plus |
arm_2R | 5606971..5607253 | 251..533 | 100 | <- | Plus |
arm_2R | 5607324..5607476 | 534..686 | 100 | <- | Plus |
arm_2R | 5608167..5608270 | 687..790 | 100 | <- | Plus |
arm_2R | 5608525..5608673 | 791..939 | 100 | | Plus |
BS09464.5prime Sequence
868 bp (814 high quality bases) assembled on 2006-04-19
> BS09464.5prime
GAAGTTATCAGTCGACATGATCTATATAGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGGCCAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATG
BS09464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1776-PA | 1341 | CG1776-RA | 1..852 | 17..868 | 4210 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RD | 6062 | CG42347-RD | 3225..4076 | 17..868 | 4230 | 99.8 | Plus |
sqa-RC | 3214 | CG42347-RC | 377..1228 | 17..868 | 4230 | 99.8 | Plus |
sqa-RB | 2057 | CG42347-RB | 377..1228 | 17..868 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9721018..9721257 | 585..346 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9723540..9723744 | 345..141 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 9719819..9719971 | 840..688 | 735 | 98.7 | Minus |
2R | 25286936 | 2R | 9720662..9720765 | 687..584 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9723829..9723920 | 141..50 | 460 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 719..790 | 135 | 65.3 | Plus |
BS09464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:31 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:35 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1776-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:51:32 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1228 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:18 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 370..1228 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:18 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9719721..9719748 | 841..868 | 100 | <- | Minus |
2R | 9719819..9719971 | 688..840 | 98 | <- | Minus |
2R | 9720662..9720765 | 584..687 | 100 | <- | Minus |
2R | 9721020..9721257 | 346..583 | 100 | <- | Minus |
2R | 9723540..9723743 | 142..345 | 100 | <- | Minus |
2R | 9723829..9723919 | 51..141 | 100 | <- | Minus |
2R | 9744864..9744904 | 9..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:51:32 Download gff for
BS09464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5607226..5607253 | 841..868 | 100 | <- | Minus |
arm_2R | 5607324..5607476 | 688..840 | 98 | <- | Minus |
arm_2R | 5608167..5608270 | 584..687 | 100 | <- | Minus |
arm_2R | 5608525..5608762 | 346..583 | 100 | <- | Minus |
arm_2R | 5611045..5611248 | 142..345 | 100 | <- | Minus |
arm_2R | 5611334..5611424 | 51..141 | 100 | <- | Minus |
arm_2R | 5632369..5632409 | 9..50 | 92 | | Minus |
BS09464.complete Sequence
1373 bp assembled on 2007-10-17
GenBank Submission: FJ636424
> BS09464.complete
GAAGTTATCAGTCGACATGATCTATATAGATGACTCAGAGCCGGAAGGTG
TTTTGGAACCGGCGTTTCCCATGCGCGATGTGACCATAAATCGCAACGTC
GATGCCCATAAACATTACGATGTGCTTGGTGAGGTGGGACGCGGAAAATT
CGGTACGGTGTACAAGTGCAGGGACAAGGCGAATGGACTGCAGCTGGCGG
CCAAGTTTGTGCCGATCCCCAAGCGCGAGGACAAGCGGAATGTGGAGCGG
GAGGTGGAGATAATGAATTCATTGCAGCATCACCTCATCATACAGTTGTA
CGCGGCATACGAATATCAGAAAATGATGTGCGTCGTCCTGGAACTCATCG
AAGGAGGTGAGCTCTTTGATCGCGTGGTGGACGATGAGTTCGTCCTCACC
GAACGAGTCTGCCGCGTCTTCATCCGCCAGGTGTGCGAGGCCATGGCCTT
CATCCACGGCAATGGAATAGTCCACCTCGATCTGAAGCCCGAAAACATTT
TGGTGCTCACACAGAAGGGCAACCGCATCAAGATCATTGACTTCGGACTG
GCTCGTAAATTTGATCCTGATAAGCGACTCAGAGTTCTCTTCGGCACTCC
GGAATTTGTGGCGCCAGAAGTTGTGAACTTTGACTGTATATCGTATGGAA
CAGATATGTGGAGTGTTGGCGTTATATGCTATGTGCTCATCTCAGGACTG
TCGCCTTTCATGGGCGAGAACGACATTGAAACAATGTCAAATGTAACCAT
TGCAAAATACGACTTCGAGGATGAATGCTTTAATGGCATATCCCCCGAGT
GTCTGGATTTCATAGCCAAGCTGCTGGCCAAGGACCTGAGCACCCGGATG
ACAGCCGCCGAGTGCATGAAGCACAAATGGCTTCAGCAGCGGCCGGCCAC
CGCCGCCACGGCCACGCCCATCACAAAGGCCGCCTCCGCGGCGTCGAAGT
CGCGCCTGAAGTCTGTGTCTCCGGTGACAGCTCCCTCGGAATCCTCCGAG
GACTCCACGGAAACCATTGAGGACGAAGACGACGAGGAAGAGGTTGCCGT
GCAGCAGGCGAAGCAGAAAGACCAGCAGCAGGACGAGGAGCTGGCCAATC
TCTGCGGCGACGCTGAACTTGAGAACAAAGAACTGGATGCCACGAAGGAC
AACCTTAAGAACTTCATCGTGCGCTGGGAGACGCATCCGAACAGTCCGTA
CGTGTTCGACGTGGAGGGGAATGTGATTGCTCCGCTGAGCGAGACGAGCT
ACCCCCATCCCAGGAGGACCCACGGCGCGGACAGCCTTTCCTCCTCCAGA
GGTGAGTACGGATCCCAGCGACAGCGCGACCGACACGCCCTCATCCACGG
CAAATGAAAGCTTTCTAGACCAT
BS09464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 1341 | CG42347-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
sqa-RD | 2667 | CG42347-PD | 1..1285 | 17..1301 | 6425 | 100 | Plus |
sqa-RC | 2667 | CG42347-PC | 1..1285 | 17..1301 | 6425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-RB | 2057 | CG42347-RB | 377..1717 | 17..1357 | 6705 | 100 | Plus |
sqa-RD | 6062 | CG42347-RD | 3225..4509 | 17..1301 | 6425 | 100 | Plus |
sqa-RC | 3214 | CG42347-RC | 377..1661 | 17..1301 | 6425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9719466..9719750 | 1123..839 | 1425 | 100 | Minus |
2R | 25286936 | 2R | 9721018..9721257 | 585..346 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 9718997..9719232 | 1357..1122 | 1180 | 100 | Minus |
2R | 25286936 | 2R | 9723540..9723744 | 345..141 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 9719819..9719971 | 840..688 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9720662..9720765 | 687..584 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9723829..9723920 | 141..50 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 4230..4301 | 719..790 | 135 | 65.3 | Plus |
BS09464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:14 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:16 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 370..1720 | 9..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:29 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 377..1716 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:01 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42347-RB | 377..1716 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:44 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqa-RB | 377..1716 | 17..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:44 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9723540..9723743 | 142..345 | 100 | <- | Minus |
2R | 9723829..9723919 | 51..141 | 100 | <- | Minus |
2R | 9744864..9744897 | 17..50 | 100 | | Minus |
2R | 9721020..9721257 | 346..583 | 100 | <- | Minus |
2R | 9719466..9719748 | 841..1123 | 100 | <- | Minus |
2R | 9719819..9719971 | 688..840 | 100 | <- | Minus |
2R | 9718998..9719230 | 1124..1356 | 100 | <- | Minus |
2R | 9720662..9720765 | 584..687 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:29 Download gff for
BS09464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5606503..5606735 | 1124..1356 | 100 | <- | Minus |
arm_2R | 5606971..5607253 | 841..1123 | 100 | <- | Minus |
arm_2R | 5607324..5607476 | 688..840 | 100 | <- | Minus |
arm_2R | 5608167..5608270 | 584..687 | 100 | <- | Minus |
arm_2R | 5608525..5608762 | 346..583 | 100 | <- | Minus |
arm_2R | 5611045..5611248 | 142..345 | 100 | <- | Minus |
arm_2R | 5611334..5611424 | 51..141 | 100 | <- | Minus |
arm_2R | 5632369..5632402 | 17..50 | 100 | | Minus |
BS09464.pep Sequence
Translation from 16 to 1356
> BS09464.pep
MIYIDDSEPEGVLEPAFPMRDVTINRNVDAHKHYDVLGEVGRGKFGTVYK
CRDKANGLQLAAKFVPIPKREDKRNVEREVEIMNSLQHHLIIQLYAAYEY
QKMMCVVLELIEGGELFDRVVDDEFVLTERVCRVFIRQVCEAMAFIHGNG
IVHLDLKPENILVLTQKGNRIKIIDFGLARKFDPDKRLRVLFGTPEFVAP
EVVNFDCISYGTDMWSVGVICYVLISGLSPFMGENDIETMSNVTIAKYDF
EDECFNGISPECLDFIAKLLAKDLSTRMTAAECMKHKWLQQRPATAATAT
PITKAASAASKSRLKSVSPVTAPSESSEDSTETIEDEDDEEEVAVQQAKQ
KDQQQDEELANLCGDAELENKELDATKDNLKNFIVRWETHPNSPYVFDVE
GNVIAPLSETSYPHPRRTHGADSLSSSRGEYGSQRQRDRHALIHGK*
BS09464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqa-PB | 446 | CG1776-PA | 1..446 | 1..446 | 2326 | 100 | Plus |
sqa-PD | 888 | CG42347-PD | 1..428 | 1..428 | 2228 | 100 | Plus |
sqa-PC | 888 | CG42347-PC | 1..428 | 1..428 | 2228 | 100 | Plus |
Strn-Mlck-PN | 602 | CG44162-PN | 261..538 | 17..293 | 743 | 48.9 | Plus |
Strn-Mlck-PG | 732 | CG44162-PG | 133..410 | 17..293 | 743 | 48.9 | Plus |