Clone BS09466 Report

Search the DGRC for BS09466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-f2-RA
Protein status:BS09466.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09466.3prime Sequence

934 bp (845 high quality bases) assembled on 2006-04-19

> BS09466.3prime
ATGGTCTAGAAAGCTTTCACTCACAAACTGTGCCCCTCTTGGCCAGTGAA
GCCTTCTGCTTCCAAATCCGGAAATTGTATATACTCGTGTCCAGTGTGGA
GTAGATGAAGATGGGCATGGAGTTGGACATGACCCAAATGGTGCCATCCT
CGTCAATCGACAAGTCGCTGGGATAAATCATATCCTCGGCATTGGAATCC
ACAGAGCCATAGTTTTCCGCCGAGATGGGCTTGCTGGTCTTCCAGCAGCC
CACTCCGTTGCGCTGGATCTCATCGAAGAAGATCACCCCAGTCCCAGGAT
CGTAAGCGTGCATCGTAGACTGGGTGGACGGACCACGGCTTCCGAGTACC
CGGAAATCGTTCCCATGATCGGAACGTGCGGCGTTGGATTCCTGCTGCAG
AACCCGGTTGGAGACCACAAACTCATTCGTACTGGCCATGGGATGGAAGT
AGGCATCGCGGCTCCCATCCAGTTTCTGGGCCCCCAAAGTTATTGAGAAG
ATGCCATCGTCCCAGCGGAAGGTCTGGCCGCCAATGCTGAGATCCCCGGA
CAGCGGATCGAAGTTGAAGTAGTTGTGCTCGAAGGACCAGATTCTATCGT
TTCGCAGGTGATAGACGTACAGGCGCCGGTACACCAGATCCGGAATATAG
GCGTAGGCATCGCCACACTGACCCGCCTTCACATCCACGGTGATGCTGGC
CAATCCGCGACCCGTCTCAGCTATACTCTCCGGAACATCGAAGCGCTTCA
GCACCTGATCCGTGGCCAAGTCAACTACCCAAATGCTGGGACGGCGGATC
TGTTGGCGGTTATTTGGATACTCCAGCATTCCCGTGTCGATAAACCAGAG
ACGCTGGCATGCATCCACGGAGGTTCTGTAGACGGACACCAGATTCTCCG
CACTCGCGTTGAACTGATTAAGCGCAAAGTTGGG

BS09466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8063-PA 1359 yellow-f2-RA 442..1359 934..17 4590 100 Minus
CG18550-PA 1290 yellow-f-RA 689..733 618..574 175 95.5 Minus
CG18550-PA 1290 yellow-f-RA 1167..1199 140..108 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 484..1401 934..17 4590 100 Minus
yellow-f-RC 1391 CG18550-RC 381..1298 934..17 1530 77.9 Minus
yellow-f-RB 1406 CG18550-RB 396..1313 934..17 1530 77.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12993664..12994326 158..820 3300 99.8 Plus
3R 32079331 3R 12991747..12992399 161..813 1030 77.2 Plus
3R 32079331 3R 12993456..12993597 17..158 710 100 Plus
3R 32079331 3R 12994428..12994548 814..934 605 100 Plus
3R 32079331 3R 12991542..12991683 17..158 275 79.6 Plus
3R 32079331 3R 12992468..12992586 816..934 250 80.7 Plus
Blast to na_te.dros performed on 2015-02-11 17:11:48 has no hits.

BS09466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:34 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 442..1359 17..934 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:40 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 442..1359 17..934 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:22 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 484..1401 17..934 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:15 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 484..1401 17..934 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:15 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12993456..12993596 17..157 100 <- Plus
3R 12993664..12994319 158..813 100 <- Plus
3R 12994428..12994548 814..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:22 Download gff for BS09466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819178..8819318 17..157 100 <- Plus
arm_3R 8819386..8820041 158..813 100 <- Plus
arm_3R 8820150..8820270 814..934 100   Plus

BS09466.5prime Sequence

823 bp (822 high quality bases) assembled on 2006-04-19

> BS09466.5prime
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTAC

BS09466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8063-PA 1359 yellow-f2-RA 1..807 17..823 4035 100 Plus
CG18550-PA 1290 yellow-f-RA 689..733 774..818 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 43..849 17..823 4035 100 Plus
yellow-f-RC 1391 CG18550-RC 234..741 311..818 815 77.4 Plus
yellow-f-RB 1406 CG18550-RB 249..756 311..818 815 77.4 Plus
yellow-f-RC 1391 CG18550-RC 89..185 49..145 245 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12994428..12994819 578..187 1960 100 Minus
3R 32079331 3R 12994075..12994326 823..572 1245 99.6 Minus
3R 32079331 3R 12994934..12995105 188..17 860 100 Minus
3R 32079331 3R 12992468..12992733 576..311 505 79.3 Minus
3R 32079331 3R 12993017..12993113 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:22:35 has no hits.

BS09466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:35 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:42 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8063-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:56:10 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..849 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:58 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..849 10..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:58 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12994075..12994319 579..823 100 <- Minus
3R 12994428..12994817 189..578 100 <- Minus
3R 12994934..12995109 10..188 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:56:10 Download gff for BS09466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819797..8820041 579..823 100 <- Minus
arm_3R 8820150..8820539 189..578 100 <- Minus
arm_3R 8820656..8820831 10..188 98   Minus

BS09466.complete Sequence

1391 bp (1391 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636425

> BS09466.complete
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCCGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAAT
AACTTTGGGGGCCCAGAAACTGGATGGGAGCCGCGATGCCTACTTCCATC
CCATGGCCAGTACGAATGAGTTTGTGGTCTCCAACCGGGTTCTGCAGCAG
GAATCCAACGCCGCACGTTCCGATCATGGGAACGATTTCCGGGTACTCGG
AAGCCGTGGTCCGTCCACCCAGTCTACGATGCACGCTTACGATCCTGGGA
CTGGGGTGATCTTCTTCGATGAGATCCAGCGCAACGGAGTGGGCTGCTGG
AAGACCAGCAAGCCCATCTCGGCGGAAAACTATGGCTCTGTGGATTCCAA
TGCCGAGGATATGATTTATCCCAGCGACTTGTCGATTGACGAGGATGGCA
CCATTTGGGTCATGTCCAACTCCATGCCCATCTTCATCTACTCCACACTG
GACACGAGTATATACAATTTCCGGATTTGGAAGCAGAAGGCTTCACTGGC
CAAGAGGGGCACAGTTTGTGAGTGAAAGCTTTCTAGACCAT

BS09466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1359 CG8063-PA 1..1359 17..1375 6795 100 Plus
yellow-f-RC 1242 CG18550-PC 178..1242 311..1375 1785 77.8 Plus
yellow-f-RB 1257 CG18550-PB 193..1257 311..1375 1785 77.8 Plus
yellow-f-RC 1242 CG18550-PC 33..129 49..145 245 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-RA 1462 CG8063-RA 43..1401 17..1375 6795 100 Plus
yellow-f-RC 1391 CG18550-RC 234..1298 311..1375 1785 77.8 Plus
yellow-f-RB 1406 CG18550-RB 249..1313 311..1375 1785 77.8 Plus
yellow-f-RC 1391 CG18550-RC 89..185 49..145 245 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12993664..12994326 1234..572 3300 99.8 Minus
3R 32079331 3R 12994428..12994819 578..187 1960 100 Minus
3R 32079331 3R 12991747..12992399 1231..579 1030 77.2 Minus
3R 32079331 3R 12994934..12995105 188..17 860 100 Minus
3R 32079331 3R 12993456..12993597 1375..1234 710 100 Minus
3R 32079331 3R 12992468..12992733 576..311 505 79.3 Minus
3R 32079331 3R 12991542..12991683 1375..1234 275 79.6 Minus
3R 32079331 3R 12993017..12993113 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2014-11-27 16:32:21 has no hits.

BS09466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:56 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 1..1359 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:13 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..1401 10..1375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:56 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 48..1400 22..1374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:56 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 39..1401 10..1375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:48 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f2-RA 48..1400 22..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:48 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12994934..12995100 22..188 100   Minus
3R 12993457..12993596 1235..1374 100 <- Minus
3R 12993664..12994319 579..1234 100 <- Minus
3R 12994428..12994817 189..578 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:56 Download gff for BS09466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8819179..8819318 1235..1374 100 <- Minus
arm_3R 8819386..8820041 579..1234 100 <- Minus
arm_3R 8820150..8820539 189..578 100 <- Minus
arm_3R 8820656..8820822 22..188 100   Minus

BS09466.pep Sequence

Translation from 16 to 1374

> BS09466.pep
MLSPQFLILSLISGLQLLSLADADPMIEVFRWKQMDFYNRGDGHLSSGGR
KDRPSFSAPVVFPGKYSRRKRKIMTSRDTPVVVSSRADSDDPNASYIPYN
NVPMGATHFRGRLFVTMPRRRVGIPSTLNYIDLAEDGSNRSPKLRAYPNF
ALNQFNASAENLVSVYRTSVDACQRLWFIDTGMLEYPNNRQQIRRPSIWV
VDLATDQVLKRFDVPESIAETGRGLASITVDVKAGQCGDAYAYIPDLVYR
RLYVYHLRNDRIWSFEHNYFNFDPLSGDLSIGGQTFRWDDGIFSITLGAQ
KLDGSRDAYFHPMASTNEFVVSNRVLQQESNAARSDHGNDFRVLGSRGPS
TQSTMHAYDPGTGVIFFDEIQRNGVGCWKTSKPISAENYGSVDSNAEDMI
YPSDLSIDEDGTIWVMSNSMPIFIYSTLDTSIYNFRIWKQKASLAKRGTV
CE*

BS09466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f2-PA 452 CG8063-PA 1..452 1..452 2385 100 Plus
yellow-f-PA 429 CG18550-PA 1..429 1..452 1666 69.5 Plus
yellow-f-PB 418 CG18550-PB 1..418 1..452 1654 69.2 Plus
yellow-f-PC 413 CG18550-PC 1..413 1..452 1646 69 Plus
yellow-c-PB 438 CG4182-PB 52..437 93..452 812 39.2 Plus