Clone Sequence Records
BS09466.3prime Sequence
934 bp (845 high quality bases) assembled on 2006-04-19
> BS09466.3prime
ATGGTCTAGAAAGCTTTCACTCACAAACTGTGCCCCTCTTGGCCAGTGAA
GCCTTCTGCTTCCAAATCCGGAAATTGTATATACTCGTGTCCAGTGTGGA
GTAGATGAAGATGGGCATGGAGTTGGACATGACCCAAATGGTGCCATCCT
CGTCAATCGACAAGTCGCTGGGATAAATCATATCCTCGGCATTGGAATCC
ACAGAGCCATAGTTTTCCGCCGAGATGGGCTTGCTGGTCTTCCAGCAGCC
CACTCCGTTGCGCTGGATCTCATCGAAGAAGATCACCCCAGTCCCAGGAT
CGTAAGCGTGCATCGTAGACTGGGTGGACGGACCACGGCTTCCGAGTACC
CGGAAATCGTTCCCATGATCGGAACGTGCGGCGTTGGATTCCTGCTGCAG
AACCCGGTTGGAGACCACAAACTCATTCGTACTGGCCATGGGATGGAAGT
AGGCATCGCGGCTCCCATCCAGTTTCTGGGCCCCCAAAGTTATTGAGAAG
ATGCCATCGTCCCAGCGGAAGGTCTGGCCGCCAATGCTGAGATCCCCGGA
CAGCGGATCGAAGTTGAAGTAGTTGTGCTCGAAGGACCAGATTCTATCGT
TTCGCAGGTGATAGACGTACAGGCGCCGGTACACCAGATCCGGAATATAG
GCGTAGGCATCGCCACACTGACCCGCCTTCACATCCACGGTGATGCTGGC
CAATCCGCGACCCGTCTCAGCTATACTCTCCGGAACATCGAAGCGCTTCA
GCACCTGATCCGTGGCCAAGTCAACTACCCAAATGCTGGGACGGCGGATC
TGTTGGCGGTTATTTGGATACTCCAGCATTCCCGTGTCGATAAACCAGAG
ACGCTGGCATGCATCCACGGAGGTTCTGTAGACGGACACCAGATTCTCCG
CACTCGCGTTGAACTGATTAAGCGCAAAGTTGGG
BS09466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8063-PA | 1359 | yellow-f2-RA | 442..1359 | 934..17 | 4590 | 100 | Minus |
CG18550-PA | 1290 | yellow-f-RA | 689..733 | 618..574 | 175 | 95.5 | Minus |
CG18550-PA | 1290 | yellow-f-RA | 1167..1199 | 140..108 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 484..1401 | 934..17 | 4590 | 100 | Minus |
yellow-f-RC | 1391 | CG18550-RC | 381..1298 | 934..17 | 1530 | 77.9 | Minus |
yellow-f-RB | 1406 | CG18550-RB | 396..1313 | 934..17 | 1530 | 77.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12993664..12994326 | 158..820 | 3300 | 99.8 | Plus |
3R | 32079331 | 3R | 12991747..12992399 | 161..813 | 1030 | 77.2 | Plus |
3R | 32079331 | 3R | 12993456..12993597 | 17..158 | 710 | 100 | Plus |
3R | 32079331 | 3R | 12994428..12994548 | 814..934 | 605 | 100 | Plus |
3R | 32079331 | 3R | 12991542..12991683 | 17..158 | 275 | 79.6 | Plus |
3R | 32079331 | 3R | 12992468..12992586 | 816..934 | 250 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:11:48 has no hits.
BS09466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:34 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 442..1359 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:40 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 442..1359 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:22 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 484..1401 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:15 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 484..1401 | 17..934 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:15 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12993456..12993596 | 17..157 | 100 | <- | Plus |
3R | 12993664..12994319 | 158..813 | 100 | <- | Plus |
3R | 12994428..12994548 | 814..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:22 Download gff for
BS09466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819178..8819318 | 17..157 | 100 | <- | Plus |
arm_3R | 8819386..8820041 | 158..813 | 100 | <- | Plus |
arm_3R | 8820150..8820270 | 814..934 | 100 | | Plus |
BS09466.5prime Sequence
823 bp (822 high quality bases) assembled on 2006-04-19
> BS09466.5prime
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTAC
BS09466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8063-PA | 1359 | yellow-f2-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG18550-PA | 1290 | yellow-f-RA | 689..733 | 774..818 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 43..849 | 17..823 | 4035 | 100 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 234..741 | 311..818 | 815 | 77.4 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 249..756 | 311..818 | 815 | 77.4 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 89..185 | 49..145 | 245 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12994428..12994819 | 578..187 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 12994075..12994326 | 823..572 | 1245 | 99.6 | Minus |
3R | 32079331 | 3R | 12994934..12995105 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 12992468..12992733 | 576..311 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12993017..12993113 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:22:35 has no hits.
BS09466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:35 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:42 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8063-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:56:10 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..849 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:58 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..849 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:58 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12994075..12994319 | 579..823 | 100 | <- | Minus |
3R | 12994428..12994817 | 189..578 | 100 | <- | Minus |
3R | 12994934..12995109 | 10..188 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:56:10 Download gff for
BS09466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819797..8820041 | 579..823 | 100 | <- | Minus |
arm_3R | 8820150..8820539 | 189..578 | 100 | <- | Minus |
arm_3R | 8820656..8820831 | 10..188 | 98 | | Minus |
BS09466.complete Sequence
1391 bp (1391 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636425
> BS09466.complete
GAAGTTATCAGTCGACATGTTATCGCCCCAATTTTTGATTCTAAGTTTAA
TCTCAGGGTTACAGCTGCTTTCCTTGGCAGATGCTGATCCCATGATAGAG
GTCTTCCGATGGAAGCAGATGGACTTTTACAATCGCGGAGATGGCCATCT
AAGCTCGGGCGGAAGGAAAGACAGGCCCAGCTTTTCAGCTCCGGTTGTCT
TTCCTGGAAAGTATTCTCGTCGAAAGCGTAAGATTATGACCTCCCGCGAT
ACACCGGTAGTGGTCAGCTCCCGCGCCGACAGCGACGACCCCAACGCCTC
CTACATTCCGTACAATAACGTGCCCATGGGAGCCACTCACTTCCGCGGCC
GCCTCTTTGTCACGATGCCTCGTCGACGGGTGGGCATCCCATCCACCTTG
AATTACATCGATCTGGCCGAGGACGGATCGAATCGCAGCCCCAAGCTGCG
GGCCTATCCCAACTTTGCGCTTAATCAGTTCAACGCGAGTGCGGAGAATC
TGGTGTCCGTCTACAGAACCTCCGTGGATGCATGCCAGCGTCTCTGGTTT
ATCGACACGGGAATGCTGGAGTATCCAAATAACCGCCAACAGATCCGCCG
TCCCAGCATTTGGGTAGTTGACTTGGCCACGGATCAGGTGCTGAAGCGCT
TCGATGTTCCGGAGAGTATAGCTGAGACGGGTCGCGGATTGGCCAGCATC
ACCGTGGATGTGAAGGCGGGTCAGTGTGGCGATGCCTACGCCTATATTCC
GGATCTGGTGTACCGGCGCCTGTACGTCTATCACCTGCGAAACGATAGAA
TCTGGTCCTTCGAGCACAACTACTTCAACTTCGATCCGCTGTCCGGGGAT
CTCAGCATTGGCGGCCAGACCTTCCGCTGGGACGATGGCATCTTCTCAAT
AACTTTGGGGGCCCAGAAACTGGATGGGAGCCGCGATGCCTACTTCCATC
CCATGGCCAGTACGAATGAGTTTGTGGTCTCCAACCGGGTTCTGCAGCAG
GAATCCAACGCCGCACGTTCCGATCATGGGAACGATTTCCGGGTACTCGG
AAGCCGTGGTCCGTCCACCCAGTCTACGATGCACGCTTACGATCCTGGGA
CTGGGGTGATCTTCTTCGATGAGATCCAGCGCAACGGAGTGGGCTGCTGG
AAGACCAGCAAGCCCATCTCGGCGGAAAACTATGGCTCTGTGGATTCCAA
TGCCGAGGATATGATTTATCCCAGCGACTTGTCGATTGACGAGGATGGCA
CCATTTGGGTCATGTCCAACTCCATGCCCATCTTCATCTACTCCACACTG
GACACGAGTATATACAATTTCCGGATTTGGAAGCAGAAGGCTTCACTGGC
CAAGAGGGGCACAGTTTGTGAGTGAAAGCTTTCTAGACCAT
BS09466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1359 | CG8063-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 178..1242 | 311..1375 | 1785 | 77.8 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 193..1257 | 311..1375 | 1785 | 77.8 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 33..129 | 49..145 | 245 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-RA | 1462 | CG8063-RA | 43..1401 | 17..1375 | 6795 | 100 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 234..1298 | 311..1375 | 1785 | 77.8 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 249..1313 | 311..1375 | 1785 | 77.8 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 89..185 | 49..145 | 245 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12993664..12994326 | 1234..572 | 3300 | 99.8 | Minus |
3R | 32079331 | 3R | 12994428..12994819 | 578..187 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 12991747..12992399 | 1231..579 | 1030 | 77.2 | Minus |
3R | 32079331 | 3R | 12994934..12995105 | 188..17 | 860 | 100 | Minus |
3R | 32079331 | 3R | 12993456..12993597 | 1375..1234 | 710 | 100 | Minus |
3R | 32079331 | 3R | 12992468..12992733 | 576..311 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12991542..12991683 | 1375..1234 | 275 | 79.6 | Minus |
3R | 32079331 | 3R | 12993017..12993113 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:21 has no hits.
BS09466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:56 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:13 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..1401 | 10..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:56 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 48..1400 | 22..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:56 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 39..1401 | 10..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:48 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f2-RA | 48..1400 | 22..1374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:48 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12994934..12995100 | 22..188 | 100 | | Minus |
3R | 12993457..12993596 | 1235..1374 | 100 | <- | Minus |
3R | 12993664..12994319 | 579..1234 | 100 | <- | Minus |
3R | 12994428..12994817 | 189..578 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:56 Download gff for
BS09466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8819179..8819318 | 1235..1374 | 100 | <- | Minus |
arm_3R | 8819386..8820041 | 579..1234 | 100 | <- | Minus |
arm_3R | 8820150..8820539 | 189..578 | 100 | <- | Minus |
arm_3R | 8820656..8820822 | 22..188 | 100 | | Minus |
BS09466.pep Sequence
Translation from 16 to 1374
> BS09466.pep
MLSPQFLILSLISGLQLLSLADADPMIEVFRWKQMDFYNRGDGHLSSGGR
KDRPSFSAPVVFPGKYSRRKRKIMTSRDTPVVVSSRADSDDPNASYIPYN
NVPMGATHFRGRLFVTMPRRRVGIPSTLNYIDLAEDGSNRSPKLRAYPNF
ALNQFNASAENLVSVYRTSVDACQRLWFIDTGMLEYPNNRQQIRRPSIWV
VDLATDQVLKRFDVPESIAETGRGLASITVDVKAGQCGDAYAYIPDLVYR
RLYVYHLRNDRIWSFEHNYFNFDPLSGDLSIGGQTFRWDDGIFSITLGAQ
KLDGSRDAYFHPMASTNEFVVSNRVLQQESNAARSDHGNDFRVLGSRGPS
TQSTMHAYDPGTGVIFFDEIQRNGVGCWKTSKPISAENYGSVDSNAEDMI
YPSDLSIDEDGTIWVMSNSMPIFIYSTLDTSIYNFRIWKQKASLAKRGTV
CE*
BS09466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f2-PA | 452 | CG8063-PA | 1..452 | 1..452 | 2385 | 100 | Plus |
yellow-f-PA | 429 | CG18550-PA | 1..429 | 1..452 | 1666 | 69.5 | Plus |
yellow-f-PB | 418 | CG18550-PB | 1..418 | 1..452 | 1654 | 69.2 | Plus |
yellow-f-PC | 413 | CG18550-PC | 1..413 | 1..452 | 1646 | 69 | Plus |
yellow-c-PB | 438 | CG4182-PB | 52..437 | 93..452 | 812 | 39.2 | Plus |