Clone Sequence Records
BS09468.3prime Sequence
876 bp (840 high quality bases) assembled on 2006-04-19
> BS09468.3prime
ATGGTCTAGAAAGCTTTTATCCCATAAAGTACTTAATTGACCGCAGTATG
GGGTACTTTTGGCCAGTGCAAAGTCCACGGAAGTCATCGTAACTTAAATC
GAAAAGGGCAATTCCGCCGAGTCCTTTGCCCTTGGCATATACTGCCTTTA
TTCCAGCAAAATCCGGATCATCGAAGCTCAGCCATACGCCAAAATCTCCA
TTATCATCTGCTGGCCGGAGAGCGTAATTTCCGTATTTCTGGGTGAGATC
CGTGACCTTGCGGAGCGGCGCCAATTCTCCTCTATATTGAGCGGATGCGT
TCTGCGACAACTTCGAGCAAATCTCTGGCCAACTTAGTAAGCCCTCAGCA
CTCTGGATTTGTATTCCGCCGGGTGCAACTCCACATGTCTCATGAACAAT
GGGAGCACCACTGAGTCCAGATCCCTTCGATAATTTCCATGCTCTGCCAT
AACTGGCTATTCCCAGGTTCAATTTTTGGCCAGGACAATGATTCTGCAGC
CAATAGTTAATCTGGAACTCCACATTCAAATGGGGCAAGCGATTCTGTTC
GTCCTGGAAGAAAATCGGAGCTGTGAAGTCCGCCTCCTCGGGATTTCGTA
GTGGGGTGAGAAAGTCGAAGGCCGCCAGGTTTATATAGTCGAACTGGGGA
TGCAGTTTGGGGACATCGAAGTACCAAGTGGAGTTCACATTGGGCAGGAC
TGTCAGAGACAGCATCAGATTAGCAGATCGAAAGGCATTCTTTATATTTC
CAACGAGATCGGTGAATTGTGACTTGTGCTCCTCCGCCTGCGGGTCCACA
ACGAAGTCACCAGTGAAAAGCTTCTTGAACGACTTCCAGTAAGATCCAAG
GGATCCATGGACTTTTCTGGGCTTAT
BS09468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4472-PA | 1320 | Idgf1-RA | 461..1320 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 512..1372 | 876..16 | 4305 | 100 | Minus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 707..567 | 210 | 76.6 | Minus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 707..567 | 210 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16446061..16446720 | 675..16 | 3300 | 100 | Minus |
2L | 23513712 | 2L | 16445789..16445990 | 876..675 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:38:37 has no hits.
BS09468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:36 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-PA | 461..1320 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:44 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4472-PA | 461..1320 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:56 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 512..1378 | 10..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:33 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 512..1378 | 10..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:33 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445789..16445989 | 676..876 | 100 | -> | Minus |
2L | 16446061..16446726 | 10..675 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:56 Download gff for
BS09468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16445789..16445989 | 676..876 | 100 | -> | Minus |
arm_2L | 16446061..16446726 | 10..675 | 99 | | Minus |
BS09468.5prime Sequence
889 bp (856 high quality bases) assembled on 2006-04-19
> BS09468.5prime
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATTCTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTG
BS09468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4472-PA | 1320 | Idgf1-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 52..924 | 17..889 | 4350 | 99.9 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 646..786 | 210 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16445329..16445990 | 17..678 | 3295 | 99.8 | Plus |
2L | 23513712 | 2L | 16446061..16446272 | 678..889 | 1060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:13:12 has no hits.
BS09468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:37 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:46 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4472-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:15 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..924 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:10 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..924 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:10 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445329..16445989 | 17..677 | 99 | -> | Plus |
2L | 16446061..16446272 | 678..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:15 Download gff for
BS09468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16446061..16446272 | 678..889 | 100 | | Plus |
arm_2L | 16445329..16445989 | 17..677 | 99 | -> | Plus |
BS09468.complete Sequence
1352 bp assembled on 2008-08-15
GenBank Submission: FJ638825
> BS09468.complete
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATTCTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGGAAATTATCGAAGGGATCTGGACTCAGTGGTGCTC
CCATTGTTCATGAGACATGTGGAGTTGCACCCGGCGGAATACAAATCCAG
AGTGCTGAGGGCTTACTAAGTTGGCCAGAGATTTGCTCGAAGTTGTCGCA
GAACGCATCCGCTCAATATAGAGGAGAATTGGCGCCGCTCCGCAAGGTCA
CGGATCTCACCCAGAAATACGGAAATTACGCTCTCCGGCCAGCAGATGAT
AATGGAGATTTTGGCGTATGGCTGAGCTTCGATGATCCGGATTTTGCTGG
AATAAAGGCAGTATATGCCAAGGGCAAAGGACTCGGCGGAATTGCCCTTT
TCGATTTAAGTTACGATGACTTCCGTGGACTTTGCACTGGCCAAAAGTAC
CCCATACTGCGGTCAATTAAGTACTTTATGGGATAAAAGCTTTCTAGACC
AT
BS09468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1320 | CG4472-PA | 1..1320 | 17..1336 | 6585 | 99.9 | Plus |
Idgf2-RB | 1107 | CG4475-PB | 420..560 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1107 | CG4475-PC | 420..560 | 646..786 | 210 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-RA | 1445 | CG4472-RA | 52..1372 | 17..1337 | 6590 | 99.9 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 1059..1199 | 646..786 | 210 | 76.6 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 630..770 | 646..786 | 210 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16446061..16446720 | 678..1337 | 3300 | 100 | Plus |
2L | 23513712 | 2L | 16445329..16445990 | 17..678 | 3295 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:01:18 has no hits.
BS09468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:04 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 50..1376 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:02 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..1369 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:49 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 50..1367 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:50 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf1-RA | 52..1369 | 17..1334 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:50 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16445329..16445989 | 17..677 | 99 | -> | Plus |
2L | 16446061..16446717 | 678..1334 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:02 Download gff for
BS09468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16445329..16445989 | 17..677 | 99 | -> | Plus |
arm_2L | 16446061..16446717 | 678..1334 | 100 | | Plus |
BS09468.pep Sequence
Translation from 16 to 1335
> BS09468.pep
MRFQLFYILGLLSVTSLTHAASNLICYYDSNSYLRQGLAKMHTNELDLAL
QFCTHLVYGYAGLKSGTLELFSLNVDLDMFYYKDITALRQKFPQLKILLS
VGGDRDVDEAHPNKYVELLEANRTAQQNFIDSSMILLKRNGFDGLDLAFQ
LPRNKPRKVHGSLGSYWKSFKKLFTGDFVVDPQAEEHKSQFTDLVGNIKN
AFRSANLMLSLTVLPNVNSTWYFDVPKLHPQFDYINLAAFDFLTPLRNPE
EADFTAPIFFQDEQNRLPHLNVEFQINYWLQNHCPGQKLNLGIASYGRAW
KLSKGSGLSGAPIVHETCGVAPGGIQIQSAEGLLSWPEICSKLSQNASAQ
YRGELAPLRKVTDLTQKYGNYALRPADDNGDFGVWLSFDDPDFAGIKAVY
AKGKGLGGIALFDLSYDDFRGLCTGQKYPILRSIKYFMG*
BS09468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf1-PA | 439 | CG4472-PA | 1..439 | 1..439 | 2326 | 100 | Plus |
Idgf2-PA | 440 | CG4475-PA | 18..438 | 18..436 | 1338 | 58.5 | Plus |
Idgf3-PD | 441 | CG4559-PD | 23..438 | 20..436 | 1242 | 54.4 | Plus |
Idgf3-PA | 441 | CG4559-PA | 23..438 | 20..436 | 1242 | 54.4 | Plus |
Idgf3-PB | 441 | CG4559-PB | 23..438 | 20..436 | 1242 | 54.4 | Plus |