Clone BS09468 Report

Search the DGRC for BS09468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf1-RA
Protein status:BS09468.pep: full length peptide match
Sequenced Size:1352

Clone Sequence Records

BS09468.3prime Sequence

876 bp (840 high quality bases) assembled on 2006-04-19

> BS09468.3prime
ATGGTCTAGAAAGCTTTTATCCCATAAAGTACTTAATTGACCGCAGTATG
GGGTACTTTTGGCCAGTGCAAAGTCCACGGAAGTCATCGTAACTTAAATC
GAAAAGGGCAATTCCGCCGAGTCCTTTGCCCTTGGCATATACTGCCTTTA
TTCCAGCAAAATCCGGATCATCGAAGCTCAGCCATACGCCAAAATCTCCA
TTATCATCTGCTGGCCGGAGAGCGTAATTTCCGTATTTCTGGGTGAGATC
CGTGACCTTGCGGAGCGGCGCCAATTCTCCTCTATATTGAGCGGATGCGT
TCTGCGACAACTTCGAGCAAATCTCTGGCCAACTTAGTAAGCCCTCAGCA
CTCTGGATTTGTATTCCGCCGGGTGCAACTCCACATGTCTCATGAACAAT
GGGAGCACCACTGAGTCCAGATCCCTTCGATAATTTCCATGCTCTGCCAT
AACTGGCTATTCCCAGGTTCAATTTTTGGCCAGGACAATGATTCTGCAGC
CAATAGTTAATCTGGAACTCCACATTCAAATGGGGCAAGCGATTCTGTTC
GTCCTGGAAGAAAATCGGAGCTGTGAAGTCCGCCTCCTCGGGATTTCGTA
GTGGGGTGAGAAAGTCGAAGGCCGCCAGGTTTATATAGTCGAACTGGGGA
TGCAGTTTGGGGACATCGAAGTACCAAGTGGAGTTCACATTGGGCAGGAC
TGTCAGAGACAGCATCAGATTAGCAGATCGAAAGGCATTCTTTATATTTC
CAACGAGATCGGTGAATTGTGACTTGTGCTCCTCCGCCTGCGGGTCCACA
ACGAAGTCACCAGTGAAAAGCTTCTTGAACGACTTCCAGTAAGATCCAAG
GGATCCATGGACTTTTCTGGGCTTAT

BS09468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4472-PA 1320 Idgf1-RA 461..1320 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 512..1372 876..16 4305 100 Minus
Idgf2-RB 1796 CG4475-RB 1059..1199 707..567 210 76.6 Minus
Idgf2-RC 1367 CG4475-RC 630..770 707..567 210 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16446061..16446720 675..16 3300 100 Minus
2L 23513712 2L 16445789..16445990 876..675 1010 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:38:37 has no hits.

BS09468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:36 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-PA 461..1320 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:44 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4472-PA 461..1320 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:56 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 512..1378 10..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:33 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 512..1378 10..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:33 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16445789..16445989 676..876 100 -> Minus
2L 16446061..16446726 10..675 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:56 Download gff for BS09468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16445789..16445989 676..876 100 -> Minus
arm_2L 16446061..16446726 10..675 99   Minus

BS09468.5prime Sequence

889 bp (856 high quality bases) assembled on 2006-04-19

> BS09468.5prime
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATTCTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTG

BS09468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4472-PA 1320 Idgf1-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 52..924 17..889 4350 99.9 Plus
Idgf2-RB 1796 CG4475-RB 1059..1199 646..786 210 76.6 Plus
Idgf2-RC 1367 CG4475-RC 630..770 646..786 210 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16445329..16445990 17..678 3295 99.8 Plus
2L 23513712 2L 16446061..16446272 678..889 1060 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:13:12 has no hits.

BS09468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:37 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:46 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4472-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:53:15 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..924 17..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:10 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..924 17..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:10 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16445329..16445989 17..677 99 -> Plus
2L 16446061..16446272 678..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:53:15 Download gff for BS09468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16446061..16446272 678..889 100   Plus
arm_2L 16445329..16445989 17..677 99 -> Plus

BS09468.complete Sequence

1352 bp assembled on 2008-08-15

GenBank Submission: FJ638825

> BS09468.complete
GAAGTTATCAGTCGACATGAGATTCCAGTTGTTTTATATTCTGGGCTTGC
TCAGTGTGACAAGTTTGACCCATGCTGCCAGCAATCTGATTTGTTATTAT
GACTCCAACTCGTATTTGCGCCAAGGTTTGGCCAAAATGCATACCAACGA
ATTGGATTTGGCCCTGCAGTTCTGCACCCATTTGGTTTACGGATATGCGG
GCCTGAAGTCCGGTACCCTCGAGCTATTCAGTCTGAATGTGGACCTGGAC
ATGTTCTACTACAAGGACATCACCGCCCTGCGACAGAAGTTTCCTCAACT
GAAGATTCTCCTCAGCGTGGGTGGAGATCGCGATGTGGATGAGGCCCACC
CCAATAAATATGTAGAGCTTCTGGAGGCGAATCGCACGGCTCAGCAGAAT
TTTATAGACAGCAGCATGATTTTGCTTAAGCGAAATGGATTCGATGGCCT
TGATCTCGCGTTCCAGTTACCCCGTAATAAGCCCAGAAAAGTCCATGGAT
CCCTTGGATCTTACTGGAAGTCGTTCAAGAAGCTTTTCACTGGTGACTTC
GTTGTGGACCCGCAGGCGGAGGAGCACAAGTCACAATTCACCGATCTCGT
TGGAAATATAAAGAATGCCTTTCGATCTGCTAATCTGATGCTGTCTCTGA
CAGTCCTGCCCAATGTGAACTCCACTTGGTACTTCGATGTCCCCAAACTG
CATCCCCAGTTCGACTATATAAACCTGGCGGCCTTCGACTTTCTCACCCC
ACTACGAAATCCCGAGGAGGCGGACTTCACAGCTCCGATTTTCTTCCAGG
ACGAACAGAATCGCTTGCCCCATTTGAATGTGGAGTTCCAGATTAACTAT
TGGCTGCAGAATCATTGTCCTGGCCAAAAATTGAACCTGGGAATAGCCAG
TTATGGCAGAGCATGGAAATTATCGAAGGGATCTGGACTCAGTGGTGCTC
CCATTGTTCATGAGACATGTGGAGTTGCACCCGGCGGAATACAAATCCAG
AGTGCTGAGGGCTTACTAAGTTGGCCAGAGATTTGCTCGAAGTTGTCGCA
GAACGCATCCGCTCAATATAGAGGAGAATTGGCGCCGCTCCGCAAGGTCA
CGGATCTCACCCAGAAATACGGAAATTACGCTCTCCGGCCAGCAGATGAT
AATGGAGATTTTGGCGTATGGCTGAGCTTCGATGATCCGGATTTTGCTGG
AATAAAGGCAGTATATGCCAAGGGCAAAGGACTCGGCGGAATTGCCCTTT
TCGATTTAAGTTACGATGACTTCCGTGGACTTTGCACTGGCCAAAAGTAC
CCCATACTGCGGTCAATTAAGTACTTTATGGGATAAAAGCTTTCTAGACC
AT

BS09468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1320 CG4472-PA 1..1320 17..1336 6585 99.9 Plus
Idgf2-RB 1107 CG4475-PB 420..560 646..786 210 76.6 Plus
Idgf2-RC 1107 CG4475-PC 420..560 646..786 210 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-RA 1445 CG4472-RA 52..1372 17..1337 6590 99.9 Plus
Idgf2-RB 1796 CG4475-RB 1059..1199 646..786 210 76.6 Plus
Idgf2-RC 1367 CG4475-RC 630..770 646..786 210 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16446061..16446720 678..1337 3300 100 Plus
2L 23513712 2L 16445329..16445990 17..678 3295 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 11:01:18 has no hits.

BS09468.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:04 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 50..1376 17..1343 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:02 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..1369 17..1334 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:49 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 50..1367 17..1334 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:50 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf1-RA 52..1369 17..1334 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:50 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16445329..16445989 17..677 99 -> Plus
2L 16446061..16446717 678..1334 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:02 Download gff for BS09468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16445329..16445989 17..677 99 -> Plus
arm_2L 16446061..16446717 678..1334 100   Plus

BS09468.pep Sequence

Translation from 16 to 1335

> BS09468.pep
MRFQLFYILGLLSVTSLTHAASNLICYYDSNSYLRQGLAKMHTNELDLAL
QFCTHLVYGYAGLKSGTLELFSLNVDLDMFYYKDITALRQKFPQLKILLS
VGGDRDVDEAHPNKYVELLEANRTAQQNFIDSSMILLKRNGFDGLDLAFQ
LPRNKPRKVHGSLGSYWKSFKKLFTGDFVVDPQAEEHKSQFTDLVGNIKN
AFRSANLMLSLTVLPNVNSTWYFDVPKLHPQFDYINLAAFDFLTPLRNPE
EADFTAPIFFQDEQNRLPHLNVEFQINYWLQNHCPGQKLNLGIASYGRAW
KLSKGSGLSGAPIVHETCGVAPGGIQIQSAEGLLSWPEICSKLSQNASAQ
YRGELAPLRKVTDLTQKYGNYALRPADDNGDFGVWLSFDDPDFAGIKAVY
AKGKGLGGIALFDLSYDDFRGLCTGQKYPILRSIKYFMG*

BS09468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf1-PA 439 CG4472-PA 1..439 1..439 2326 100 Plus
Idgf2-PA 440 CG4475-PA 18..438 18..436 1338 58.5 Plus
Idgf3-PD 441 CG4559-PD 23..438 20..436 1242 54.4 Plus
Idgf3-PA 441 CG4559-PA 23..438 20..436 1242 54.4 Plus
Idgf3-PB 441 CG4559-PB 23..438 20..436 1242 54.4 Plus