Clone BS09471 Report

Search the DGRC for BS09471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptLsp1beta-RA
Protein status:BS09471.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09471.3prime Sequence

940 bp (863 high quality bases) assembled on 2006-04-19

> BS09471.3prime
ATGGTCTAGAAAGCTTTCAGAACTTGAAGTACTTGGTGTAGTAATCGTTG
AAGAAGGTGTAGTCGAAGTGGCCGTAGTTGGAGTAGCTCTTGTACTTGTA
GTAGGGCTCCATGGTGTCGGCGTGGTAGATGGACACGTCCTTGAAGTACA
TGTTGGGCACGAAGAACTCGTACTCGTCGATCGCACGGTCGAAGGGATAG
CCGAAGGGCAGGCTGTCCACGTAGCGCGCTCCGGATCCGATACCACAGGA
GTAGGTGTAGTCGAAGGTGGAGAACTGCTCGTGGGCGGGGGCCACGTACG
GCACCACCATGAAGAACATCTGCATGGGCATGCCCTTCTGCCAGCCCATG
GGCAGGACGAGGCGGTCGGGGAATCCGCAGTGGGGCTCGCTGATGTCCAG
GGGGAAGTCGTACTTGCCGTCGAAGGCCATCATCGTGTAGTAGTAGAGCT
CGGTGTAGGTGGTGCGGTCCTTGACGGTCCAGTAGAACTCGCTGGACTTG
CGAGTGATCTTGTTGGTGCCGGCCTTCAGCTCGTAGTAGAACTCGTCGAT
CTCCATGAAGTTCATGCGGTTCTCGGCCAGGGAAATGACTTTGCCGAACT
CGTCGAACTTGGGTCCCAGGAAGGCGCGGATGACCACCTTCTCGACCTTC
TCGGACTCGATGGTGTAGGTGTAGGTGAAGGGCTTGTGGTTGAGGCGCAT
CTGGCGGGCGAACAGCGACATGTCCCACACGAACTTGCCGTCCTGGAAGA
TCATCTTGTCGTTGAGCATGTTGGTCACATCGAAATCGACCAGGTCGAAG
TAGGTGGTTAGGTCGCTGACCTCCACGTTCTTCATGGTCACGCCGGGCAT
CAGGAGCTGCTCCTTGGTGTACTTGGGCAGGTAGTGCATGAACTGGAAGT
ACCCCTGGGCGATGGACTTGTAGAACATGTAGTACATCGG

BS09471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4178-PA 2370 Lsp1beta-RA 1447..2370 940..17 4595 99.8 Minus
CG2559-PA 2451 Lsp1alpha-RA 2185..2342 283..126 315 87.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 2080..2165 388..303 280 93 Minus
CG2559-PA 2451 Lsp1alpha-RA 1987..2057 481..411 230 92.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 2387..2447 81..21 205 93.4 Minus
CG2559-PA 2451 Lsp1alpha-RA 1663..1724 805..744 185 91.9 Minus
CG2559-PA 2451 Lsp1alpha-RA 1540..1610 928..858 180 90.1 Minus
CG2559-PA 2451 Lsp1alpha-RA 1825..1876 643..592 160 92.3 Minus
CG2559-PA 2451 Lsp1alpha-RA 1777..1811 691..657 150 97.1 Minus
CG6821-PA 2319 Lsp1gamma-RA 1585..1618 784..751 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 1679..2602 940..17 4605 99.9 Minus
Lsp1beta-RA 2605 CG4178-RA 1535..2458 940..17 4605 99.9 Minus
Lsp1alpha-RA 2625 CG2559-RA 1623..2539 937..21 2320 83.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 900246..901169 940..17 4605 99.9 Minus
X 23542271 X 12491980..12492896 937..21 2320 83.5 Minus
3L 28110227 3L 68146..68832 802..113 745 74.2 Minus
Blast to na_te.dros performed 2015-02-10 20:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6981..7054 106..33 109 60.8 Minus

BS09471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:43 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1447..2370 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:55 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1447..2370 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:00 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1535..2460 13..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:05 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1535..2460 13..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:05 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 900246..901171 13..940 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:00 Download gff for BS09471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 900246..901171 13..940 99   Minus

BS09471.5prime Sequence

942 bp (859 high quality bases) assembled on 2006-04-19

> BS09471.5prime
GAAGTTATCAGTCGACATGAAGATCGCCATCGCATTGCTGGCCTGCCTGG
GCCTGGCCGCCGCTGCCAGCTTCCACCAGACCCACGAAGTCAAGATCGCC
GACAAGGCCTTCCTGATGAAGCAGAAGTTCCTCTTCGAGATCGTCTACCG
CGTGGAGGATCCGCTGATGTTCGAGGACCACATCAAGCAGGGCGAGAAAT
TCTACTTTGAGGAGTCCTACTACACTCACTACGACATGTACATGAAGAAG
TTCTTCGAGGCCTACAAGGCTCACGCCCTGCTGCCCAAGGGCGAGTTCTT
CGGCGCCCTGGTCATGTCCCACGCCAAGCAGGCCCGCGGTCTGTTCAACT
TCTTCTACTACGCCAAGGACTGGGAGACCTTCGCCGCCAACGTGGCCTGG
GCCCGCATGCACGTGAATGAGGGCATGTTCGTCTACGCCCTGACCATGGC
CGTGATCCACCGCAACGACTTCCATGGACTGATGCTGCCCTCGATCTACG
AGATCTTCCCACAGTTCTTCTTCAACAGCAAGTTTGTGTTCGAAGCGGAG
AAGTTCGACTACGAGATGTGGATGAAGATGACGATGTACGAGAAGGAGTA
CATGGATGTGTACTACAAGACCAACGGATACGACTACTCAACCATGTACC
GGTCCAGCGACTACACCTACATGAAGGACTTCAAGACCTGGCAGTGGTGG
AAACTGATGGGTCTGGGCGAGCACTGGTACACCGAGGACAAGTTCATTCT
GCGCGAGAACATCTACGAGTTCAACCAGGAGACCAAGTGGCTGTCGATGA
TGAAGGACGTGAAGAAGTTCTACATGCCCGTGGACTACACCCGCGACCCT
GAACTCTACAACAAGGAGTCCAAGCTGTCCTACTTCACCGAGGATCTGGG
CTGGAACGCCTACTGGTACTATCTGAACATGGACTACTCCTT

BS09471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4178-PA 2370 Lsp1beta-RA 1..832 17..848 4160 100 Plus
CG4178-PA 2370 Lsp1beta-RA 838..926 854..942 445 100 Plus
CG2559-PA 2451 Lsp1alpha-RA 62..158 78..174 360 94.8 Plus
CG2559-PA 2451 Lsp1alpha-RA 708..796 643..731 295 93.2 Plus
CG2559-PA 2451 Lsp1alpha-RA 814..902 749..837 295 93.2 Plus
CG2559-PA 2451 Lsp1alpha-RA 919..1007 854..942 295 93.2 Plus
CG2559-PA 2451 Lsp1alpha-RA 221..296 237..312 230 92.1 Plus
CG6821-PA 2319 Lsp1gamma-RA 306..364 325..383 220 94.9 Plus
CG2559-PA 2451 Lsp1alpha-RA 307..362 323..378 180 92.8 Plus
CG6821-PA 2319 Lsp1gamma-RA 73..125 92..144 165 92.4 Plus
CG2559-PA 2451 Lsp1alpha-RA 403..464 419..480 160 90.3 Plus
CG2559-PA 2451 Lsp1alpha-RA 484..522 500..538 145 94.8 Plus
CG6821-PA 2319 Lsp1gamma-RA 845..903 879..937 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 223..1158 7..942 4605 99.6 Plus
Lsp1beta-RA 2605 CG4178-RA 79..1014 7..942 4605 99.6 Plus
Lsp1alpha-RA 2625 CG2559-RA 93..696 17..620 1475 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 899010..899725 227..942 3520 99.4 Plus
2L 23513712 2L 898722..898941 7..226 1070 99.1 Plus
X 23542271 X 12490660..12491053 227..620 1070 84.8 Plus
X 23542271 X 12491157..12491456 643..942 1020 89.3 Plus
3L 28110227 3L 66799..67167 239..607 780 80.8 Plus
X 23542271 X 12490383..12490540 17..174 445 85.4 Plus
Blast to na_te.dros performed on 2015-02-11 13:14:22 has no hits.

BS09471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:44 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:56 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4178-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:20:23 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 73..1014 1..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:59 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 73..1014 1..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:59 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 898716..898941 1..226 97 -> Plus
2L 899010..899725 227..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:20:23 Download gff for BS09471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 898716..898941 1..226 97 -> Plus
arm_2L 899010..899725 227..942 99   Plus

BS09471.complete Sequence

2402 bp assembled on 2008-01-16

GenBank Submission: FJ636426

> BS09471.complete
GAAGTTATCAGTCGACATGAAGATCGCCATCGCATTGCTGGCCTGCCTGG
GCCTGGCCGCCGCTGCCAGCTTCCACCAGACCCACGAAGTCAAGATCGCC
GACAAGGCCTTCCTGATGAAGCAGAAGTTCCTCTTCGAGATCGTCTACCG
CGTGGAGGATCCGCTGATGTTCGAGGACCACATCAAGCAGGGCGAGAAAT
TCTACTTTGAGGAGTCCTACTACACTCACTACGACATGTACATGAAGAAG
TTCTTCGAGGCCTACAAGGCTCACGCCCTGCTGCCCAAGGGCGAGTTCTT
CGGCGCCCTGGTCATGTCCCACGCCAAGCAGGCCCGCGGTCTGTTCAACT
TCTTCTACTACGCCAAGGACTGGGAGACCTTCGCCGCCAACGTGGCCTGG
GCCCGCATGCACGTGAATGAGGGCATGTTCGTCTACGCCCTGACCATGGC
CGTGATCCACCGCAACGACTTCCATGGACTGATGCTGCCCTCGATCTACG
AGATCTTCCCACAGTTCTTCTTCAACAGCAAGTTTGTGTTCGAAGCGGAG
AAGTTCGACTACGAGATGTGGATGAAGATGACGATGTACGAGAAGGAGTA
CATGGATGTGTACTACAAGACCAACGGATACGACTACTCAACCATGTACC
GGTCCAGCGACTACACCTACATGAAGGACTTCAAGACCTGGCAGTGGTGG
AAACTGATGGGTCTGGGCGAGCACTGGTACACCGAGGACAAGTTCATTCT
GCGCGAGAACATCTACGAGTTCAACCAGGAGACCAAGTGGCTGTCGATGA
TGAAGGACGTGAAGAAGTTCTACATGCCCGTGGACTACACCCGCGACCTG
AACCTCTACAACAAGGAGTCCAAGCTGTCCTACTTCACCGAGGATCTGGG
CTGGAACGCCTACTGGTACTATCTGAACATGGACTACTCCTTCTTCCTGG
ACGGCAACACCTTCGATCTCAAGAACGACCGTCGCGGCGAGTGGTGGCTC
TACAACGTGCACCAGCTGCTCAGCAGATACTACATGGAGCGCCTGTCGCA
CGGATTCGGCGAGATCCCCGAGTTCTCCTGGTACCAGCAGATCGAGATGG
GCTACGACCCCCAGCTGATCTACTACAACGGCATTGGCTACAGCTTCCGC
AAGAACTACTACGAGATGGAGACCTACGCCAACTACGATATGCTGGACAA
GATCACCGGCTTCCTGAAGCGCATTCACAACATCGTCGAAATGGGCTACT
ACAAGACCGCCGATGGCCACACCATCGATCTGCGCAAACCCGAGGCCATC
GAGTTCATTGGCAACATGCTGCAGGGCAACGTGGACGCCATGGACAAGAT
GTTCTACCAGTTCTGGTACATGCTCGCCCACATGTACTTCGCTGACGCCG
ACTATTACCAGATGGACGTGTACCCCAACGTGATGCTTAACTTCGAGACC
ATGATGCGCGACCCGATGTACTACATGTTCTACAAGTCCATCGCCCAGGT
GTACTTCCAGTTCATGCACTACCTGCCCAAGTACACCAAGGAGCAGCTCC
TGATGCCCGGCGTGACCATGAAGAACGTGGAGGTCAGCGACCTAACCACC
TACTTCGACCTGGTCGATTTCGATGTGACCAACATGCTCAACGACAAGAT
GATCTTCCAGGACGGCAAGTTCGTGTGGGACATGTCGCTGTTCGCCCGCC
AGATGCGCCTCAACCACAAGCCCTTCACCTACACCTACACCATCGAGTCC
GAGAAGGTCGAGAAGGTGGTCATCCGCGCCTTCCTGGGACCCAAGTTCGA
CGAGTTCGGCAAAGTCATTTCCCTGGCCGAGAACCGCATGAACTTCATGG
AGATCGACGAGTTCTACTACGAGCTGAAGGCCGGCACCAACAAGATCACT
CGCAAGTCCAGCGAGTTCTACTGGACCGTCAAGGACCGCACCACCTACAC
CGAGCTCTACTACTACACGATGATGGCCTTCGACGGCAAGTACGACTTCC
CCCTGGACATCAGCGAGCCCCACTGCGGATTCCCCGACCGCCTCGTCCTG
CCCATGGGCTGGCAGAAGGGCATGCCCATGCAGATGTTCTTCATGGTGGT
GCCGTACGTGGCCCCCGCCCACGAGCAGTTCTCCACCTTCGACTACACCT
ACTCCTGTGGTATCGGATCCGGAGCGCGCTACGTGGACAGCCTGCCCTTC
GGCTATCCCTTCGACCGTGCGATCGACGAGTACGAGTTCTTCGTGCCCAA
CATGTACTTCAAGGACGTGTCCATCTACCACGCCGACACCATGGAGCCCT
ACTACAAGTACAAGAGCTACTCCAACTACGGCCACTTCGACTACACCTTC
TTCAACGATTACTACACCAAGTACTTCAAGTTCTGAAAGCTTTCTAGACC
AT

BS09471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2370 CG4178-PB 1..2370 17..2386 11850 100 Plus
Lsp1beta-RA 2370 CG4178-PA 1..2370 17..2386 11850 100 Plus
Lsp1alpha-RA 2451 CG2559-PA 708..2447 643..2382 4770 84.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-RB 2749 CG4178-RB 223..2602 7..2386 11870 99.9 Plus
Lsp1beta-RA 2605 CG4178-RA 79..2458 7..2386 11870 99.9 Plus
Lsp1alpha-RA 2625 CG2559-RA 800..2539 643..2382 4770 84.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 899010..901169 227..2386 10800 100 Plus
X 23542271 X 12491157..12492896 643..2382 4770 84.9 Plus
3L 28110227 3L 67212..68832 667..2290 1260 72 Plus
2L 23513712 2L 898722..898941 7..226 1070 99.1 Plus
X 23542271 X 12490660..12491053 227..620 1070 84.8 Plus
3L 28110227 3L 66799..67167 239..607 780 80.8 Plus
X 23542271 X 12490383..12490540 17..174 445 85.4 Plus
3L 28110227 3L 66587..66672 92..177 235 84.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:51:16 has no hits.

BS09471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:16 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 1..2370 17..2386 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:47 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 86..2454 17..2385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:19 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 89..2457 17..2385 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:10:16 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 70..2457 1..2390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:38 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
Lsp1beta-RA 89..2457 17..2385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:38 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
2L 898732..898941 17..226 100 -> Plus
2L 899010..901168 227..2385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:19 Download gff for BS09471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 898732..898941 17..226 100 -> Plus
arm_2L 899010..901168 227..2385 100   Plus

BS09471.pep Sequence

Translation from 16 to 2385

> BS09471.pep
MKIAIALLACLGLAAAASFHQTHEVKIADKAFLMKQKFLFEIVYRVEDPL
MFEDHIKQGEKFYFEESYYTHYDMYMKKFFEAYKAHALLPKGEFFGALVM
SHAKQARGLFNFFYYAKDWETFAANVAWARMHVNEGMFVYALTMAVIHRN
DFHGLMLPSIYEIFPQFFFNSKFVFEAEKFDYEMWMKMTMYEKEYMDVYY
KTNGYDYSTMYRSSDYTYMKDFKTWQWWKLMGLGEHWYTEDKFILRENIY
EFNQETKWLSMMKDVKKFYMPVDYTRDLNLYNKESKLSYFTEDLGWNAYW
YYLNMDYSFFLDGNTFDLKNDRRGEWWLYNVHQLLSRYYMERLSHGFGEI
PEFSWYQQIEMGYDPQLIYYNGIGYSFRKNYYEMETYANYDMLDKITGFL
KRIHNIVEMGYYKTADGHTIDLRKPEAIEFIGNMLQGNVDAMDKMFYQFW
YMLAHMYFADADYYQMDVYPNVMLNFETMMRDPMYYMFYKSIAQVYFQFM
HYLPKYTKEQLLMPGVTMKNVEVSDLTTYFDLVDFDVTNMLNDKMIFQDG
KFVWDMSLFARQMRLNHKPFTYTYTIESEKVEKVVIRAFLGPKFDEFGKV
ISLAENRMNFMEIDEFYYELKAGTNKITRKSSEFYWTVKDRTTYTELYYY
TMMAFDGKYDFPLDISEPHCGFPDRLVLPMGWQKGMPMQMFFMVVPYVAP
AHEQFSTFDYTYSCGIGSGARYVDSLPFGYPFDRAIDEYEFFVPNMYFKD
VSIYHADTMEPYYKYKSYSNYGHFDYTFFNDYYTKYFKF*

BS09471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lsp1beta-PB 789 CG4178-PB 1..789 1..789 4346 100 Plus
Lsp1beta-PA 789 CG4178-PA 1..789 1..789 4346 100 Plus
Lsp1alpha-PA 816 CG2559-PA 1..815 1..788 3670 79.3 Plus
Lsp1gamma-PA 772 CG6821-PA 1..769 1..777 2755 62.4 Plus
Lsp2-PB 701 CG6806-PB 11..695 4..757 928 30.7 Plus