Clone BS09472 Report

Search the DGRC for BS09472

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG4945-RA
Protein status:BS09472.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09472.3prime Sequence

903 bp (842 high quality bases) assembled on 2006-04-19

> BS09472.3prime
ATGGTCTAGAAAGCTTCTATCTGCGCTGTCGCCGGGCGATGTTGTGGCTG
CTGGAGCTGGTGGTGCGATCGTAGGCGGTGTCCTTCATCAGCGAGGGACT
TCTGCTGGCCGCCACCGCCATCTCGCTGACATCGACCGATCCGTAGGCAC
TGTCTTTAACTTGAGAAGCATATGGGAGATTAGCGTAGCTCGAGTGCCGG
GCATCGCGAAGCTCTAGACGATTCAATTCGGTCTCCATGGACGTGTACAT
AGTCAGGTTGCTGGCCAGCAGATCCTGCCGCGAGCCCAGTGTCATTAGGC
TGTCCGCGTTGTTCAGCGTGGACGCTGTGGTGCTGTAGTTGGAGGCGGGA
CTGGCCGACTTGGAATACGCCATGGCCACCTGACCCATCTCGCTGGGTCC
CTGCTGCAGTGCACCCGTGCGTGGATCGAAGTGCTTTTGGGTGGCGTCCT
TCAGGGTGCTGTTAATCTCCTTTGCGCTCTCCGCCGGACTTGTGGGCTTG
CGCAGCGACGATATATGCCCGGGTAGCGGCTCGCGCGAGACCGACGAGGA
TGGGGATGCCGAATTGGTCTCCTCGTTCTCCTCCTCGTCCTCCTCCGTAA
TGATGGACGACTCTATCCAGTCTTTGATGCGGTTCTTCTTCTGCTGCCGG
TCCACATTGGTCTCGATACCGCAGTCGGCCAGGGTGTAGAGCAGCTTGTT
CTTCTCATCCGGGCTGCTGTGGAAGGAGTACATGGAGGGGCACAGTTCGT
CCGTCTCGTACTCGGCCATCTCCTTCTGGGCGGTCTTGGCCAGCCATCGG
TCGTCTAGGAACTTGGTAACATCGGCCAGGCTCTTGGGTCGATTGGAGAT
CCTGGCAAAGAAGCGCTTTGACATCCGCTGCGCATTCGAGGTGAGCAACT
TGA

BS09472.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PA 1656 CG4945-RA 770..1656 903..17 4360 99.6 Minus
CG4945-PB 1734 CG4945-RB 770..1459 903..214 3375 99.5 Minus
CG4945-PC 1734 CG4945-RC 770..1459 903..214 3375 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 2146 CG4945-RA 1192..2078 903..17 4390 99.7 Minus
CG4945-RD 1993 CG4945-RD 1093..1782 903..214 3405 99.6 Minus
CG4945-RC 2622 CG4945-RC 1341..2030 903..214 3405 99.6 Minus
CG4945-RD 1993 CG4945-RD 1781..1925 161..17 725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16569157..16569528 585..214 1860 100 Minus
2R 25286936 2R 16568725..16569045 903..583 1560 99.1 Minus
2R 25286936 2R 16569854..16570052 215..17 995 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:53:08 has no hits.

BS09472.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:45 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 771..1656 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:58 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 771..1656 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:56 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1193..2081 11..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:34 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1193..2081 11..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:34 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16569856..16570055 11..213 98   Minus
2R 16568726..16569044 584..902 99 -> Minus
2R 16569159..16569528 214..583 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:56 Download gff for BS09472.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12456231..12456549 584..902 99 -> Minus
arm_2R 12456664..12457033 214..583 100 -> Minus
arm_2R 12457361..12457560 11..213 98   Minus

BS09472.5prime Sequence

860 bp (783 high quality bases) assembled on 2006-04-19

> BS09472.5prime
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTNCAGCTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCAATCGA
CCCAAGAGCC

BS09472.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PB 1734 CG4945-RB 1..844 17..860 4176 99.7 Plus
CG4945-PC 1734 CG4945-RC 1..844 17..860 4176 99.7 Plus
CG4945-PA 1656 CG4945-RA 1..844 17..860 4176 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RD 1993 CG4945-RD 324..1167 17..860 4194 99.8 Plus
CG4945-RA 2146 CG4945-RA 423..1266 17..860 4194 99.8 Plus
CG4945-RC 2622 CG4945-RC 572..1415 17..860 4194 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16567783..16568047 72..336 1325 100 Plus
2R 25286936 2R 16568558..16568799 619..860 1184 99.2 Plus
2R 25286936 2R 16568310..16568492 436..618 915 100 Plus
2R 25286936 2R 16568107..16568208 334..435 510 100 Plus
2R 25286936 2R 16566936..16566992 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:50:14 has no hits.

BS09472.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:46 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PB 1..844 17..860 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:20:59 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:20:48 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RC 564..1415 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:57 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4945-RC 564..1415 9..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:57 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16566928..16566992 9..73 95 -> Plus
2R 16567785..16568046 74..335 100 -> Plus
2R 16568109..16568208 336..435 100 -> Plus
2R 16568310..16568492 436..618 100 -> Plus
2R 16568558..16568799 619..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:20:48 Download gff for BS09472.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12454433..12454497 9..73 95 -> Plus
arm_2R 12455290..12455551 74..335 100 -> Plus
arm_2R 12455614..12455713 336..435 100 -> Plus
arm_2R 12455815..12455997 436..618 100 -> Plus
arm_2R 12456063..12456304 619..860 99   Plus

BS09472.complete Sequence

1688 bp assembled on 2007-10-31

GenBank Submission: FJ636427

> BS09472.complete
GAAGTTATCAGTCGACATGTCTAAGAAACCACGTGGAAACATTCACAAGA
TACGAGAGTTCGAATTGGAGAAGATCCAGCTTGTGGACGAGTTTGATATC
ATACAGATCGTTGGCGAAGGATGGTTCGGGAAGATTCTACTGGTGGAGCA
TCGGGGATCACAGACGGAGATGGTCCTGAAAGCTGTACCCAAACCATATG
TGACATTGCGTGACTTTTACCGGGAATTCCACTATGGACTCCACTTGGGA
GTCCATCGACACATTGTGACCACCTACGACGTGGCCTTTGAGACAGCGGG
CTTCTACGTTTTCACCCAGGAGTATGCTCCACTAGGGGATCTCACATCGA
ACGTGACCGATTCGGGTGTGGGCGAAGTTTACAGCAAGCGGGTGGCGAAA
CAATTGGCCTCGGCCATTGACTACATGCATTCAAAAGACATAGTGCATCG
GGACATAAAGCTAGACAATGTGCTCATCTATCGCTCGGACTTCCAGCGCA
TCAAGCTCTGCGATTTCGGCGAGTCCTTTCCCACAGGCTCCACTGTGGAG
CGACGCAACGAGTGGTTGCCCTACAGTCCGCCAGAAGTATTAGAAATTAA
GCCCGAGGGCAGTTACAAAGCCGATCCCAGCCACGATGTTTGGCAGTTTG
GCATTGTGATTTTTGTGTGTCTAACTGGCTGTTTGCCCTGGCAGAAGGCT
GCCTCCGATGATCCGCGCTATGTGCGCTATCTGGCCTGGCAGGGCGGACT
TATGATGATGCCGCTGCGGCGAACTCCACGACTTTTCAAGTTGCTCACCT
CGAATGCGCAGCGGATGTTCAAGCGCTTCTTTGCCAGGATCTCCAATCGA
CCCAAGAGCCTGGCCGATGTTACCAAGTTCCTAGACGACCGATGGCTGGC
CAAGACCGCCCAGAAGGAGATGGCCGAGTACGAGACGGACGAACTGTGCC
CCTCCATGTACTCCTTCCACAGCAGCCCGGATGAGAAGAACAAGCTGCTC
TACACCCTGGCCGACTGCGGTATCGAGACCAATGTGGACCGGCAGCAGAA
GAAGAACCGCATCAAAGACTGGATAGAGTCGTCCATCATTACGGAGGAGG
ACGAGGAGGAGAACGAGGAGACCAATTCGGCATCCCCATCCTCGTCGGTC
TCGCGCGAGCCGCTACCCGGGCATATATCGTCGCTGCGCAAGCCCACAAG
TCCGGCGGAGAGCGCAAAGGAGATTAACAGCACCCTGAAGGACGCCACCC
AAAAGCACTTCGATCCACGCACGGGTGCACTGCAGCAGGGACCCAGCGAG
ATGGGTCAGGTGGCCATGGCGTATTCCAAGTCGGCCAGTCCCGCCTCCAA
CTACAGCACCACAGCGTCCACGCTGAACAACGCGGACAGCCTAATGACAC
TGGGCTCGCGGCAGGATCTGCTGGCCAGCAACCTGACTATGTACACGTCC
ATGGAGACCGAATTGAATCGTCTAGAGCTTCGCGATGCCCGGCACTCGAG
CTACGCTAATCTCCCATATGCTTCTCAAGTTAAAGACAGTGCCTACGGAT
CGGTCGATGTCAGCGAGATGGCGGTGGCGGCCAGCAGAAGTCCCTCGCTG
ATGAAGGACACCGCCTACGATCGCACCACCAGCTCCAGCAGCCACAACAT
CGCCCGGCGACAGCGCAGATAGAAGCTTTCTAGACCAT

BS09472.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 1656 CG4945-PA 1..1656 17..1672 8265 99.9 Plus
CG4945-RD 1602 CG4945-PD 1..1459 17..1475 7280 99.9 Plus
CG4945-RC 1734 CG4945-PC 1..1459 17..1475 7280 99.9 Plus
CG4945-RD 1602 CG4945-PD 1458..1602 1528..1672 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-RA 2146 CG4945-RA 423..2078 17..1672 8265 99.9 Plus
CG4945-RD 1993 CG4945-RD 324..1782 17..1475 7280 99.9 Plus
CG4945-RC 2622 CG4945-RC 572..2030 17..1475 7280 99.9 Plus
CG4945-RD 1993 CG4945-RD 1781..1925 1528..1672 725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16568558..16569045 619..1106 2425 99.8 Plus
2R 25286936 2R 16569157..16569528 1104..1475 1860 100 Plus
2R 25286936 2R 16567783..16568047 72..336 1325 100 Plus
2R 25286936 2R 16569854..16570052 1474..1672 995 100 Plus
2R 25286936 2R 16568310..16568492 436..618 915 100 Plus
2R 25286936 2R 16568107..16568208 334..435 510 100 Plus
2R 25286936 2R 16566936..16566992 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:49:19 has no hits.

BS09472.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:18 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 1..1656 17..1672 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:20 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 391..2057 9..1678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:31 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 423..2078 17..1672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:18 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 399..2054 17..1672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:19 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
CG4945-RA 423..2078 17..1672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:19 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16567785..16568046 74..335 100 -> Plus
2R 16568109..16568208 336..435 100 -> Plus
2R 16568310..16568492 436..618 100 -> Plus
2R 16568558..16569044 619..1105 99 -> Plus
2R 16566936..16566992 17..73 100 -> Plus
2R 16569159..16569528 1106..1475 100 -> Plus
2R 16569856..16570052 1476..1672 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:31 Download gff for BS09472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12454441..12454497 17..73 100 -> Plus
arm_2R 12455290..12455551 74..335 100 -> Plus
arm_2R 12455614..12455713 336..435 100 -> Plus
arm_2R 12455815..12455997 436..618 100 -> Plus
arm_2R 12456063..12456549 619..1105 99 -> Plus
arm_2R 12456664..12457033 1106..1475 100 -> Plus
arm_2R 12457361..12457557 1476..1672 100   Plus

BS09472.pep Sequence

Translation from 16 to 1671

> BS09472.pep
MSKKPRGNIHKIREFELEKIQLVDEFDIIQIVGEGWFGKILLVEHRGSQT
EMVLKAVPKPYVTLRDFYREFHYGLHLGVHRHIVTTYDVAFETAGFYVFT
QEYAPLGDLTSNVTDSGVGEVYSKRVAKQLASAIDYMHSKDIVHRDIKLD
NVLIYRSDFQRIKLCDFGESFPTGSTVERRNEWLPYSPPEVLEIKPEGSY
KADPSHDVWQFGIVIFVCLTGCLPWQKAASDDPRYVRYLAWQGGLMMMPL
RRTPRLFKLLTSNAQRMFKRFFARISNRPKSLADVTKFLDDRWLAKTAQK
EMAEYETDELCPSMYSFHSSPDEKNKLLYTLADCGIETNVDRQQKKNRIK
DWIESSIITEEDEEENEETNSASPSSSVSREPLPGHISSLRKPTSPAESA
KEINSTLKDATQKHFDPRTGALQQGPSEMGQVAMAYSKSASPASNYSTTA
STLNNADSLMTLGSRQDLLASNLTMYTSMETELNRLELRDARHSSYANLP
YASQVKDSAYGSVDVSEMAVAASRSPSLMKDTAYDRTTSSSSHNIARRQR
R*

BS09472.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4945-PA 551 CG4945-PA 1..551 1..551 2859 100 Plus
CG4945-PD 533 CG4945-PD 1..533 1..551 2737 96.7 Plus
CG4945-PC 577 CG4945-PC 1..492 1..492 2542 99.2 Plus
CG4945-PB 577 CG4945-PB 1..492 1..492 2542 99.2 Plus
CG11221-PB 456 CG11221-PB 78..437 3..355 574 33 Plus