Clone Sequence Records
BS09473.3prime Sequence
931 bp (894 high quality bases) assembled on 2006-04-19
> BS09473.3prime
ATGGTCTAGAAAGCTTTTAAAACGCCTCCGCGGATGAGGCACCGGGGTTC
TTCTGTTGCTGTTTGCAAAGCTCCTGCAGGGCGCGTGGATCCTTGACGCA
CGCCTCAGTTAGAACTTCCACGTGGCCGTTCTCGTTGATGAGCAGATCGT
CTTCGATGCGGATGCCGATGCCCCGGAACTCGGGCGGCACGTCGCCGCAA
TCCTGGCCAATGTAGATGCCCGGCTCAACGGTGAAGACCATGCCGGGCAC
GATGCGTGTGTTGCGTGGCACGTGCGGTGTGTCGTGCACGTCCATCCCAA
GGTAGTGGGAGACGTGGTGCGGACAGAAGCGGTAGCCCTGGCTGACCAGT
TCCTTGTACTCGCTGAACGACTTGCCCACCAGCCCGATCTCCTGCAAGTA
CTTGCCCAGCTTGTAGCAGGTGGTCTCGAACAGCTGGTCGAGCGTCTCGC
CGCCCGGCTTCATCACGTTGCCAATAATCTCCTCCTGCAGCTGGTGCAGC
ATGTCGTACAGTGTGCGCTGCGGCTCCGTGAAAACCCCACTCGCCGGCCA
GGTGCGTGTGATGTCGCTGGTGTAGCCGCCATACTCGCAGCCGGCGTCCA
TCAGCACGAGATCCTGCTGACCCAACAACTGGCTGTTGGCCACGTAGTGG
ATCACCGTGGCGTTTTTACCGGCAGCCACCACCGGCGGGTAGGCCAGGTA
GCTGGCGTTGCGCATGCGGCACTTGTAGTCAATCGCGGCGAACAGATGGT
GCTCCGACTGACCTGGCCGGGTCTCGGCCATCACTTCGTTGAACGAGCGT
GAGGCTATGTCGCANGTGCGCCGCATTAACTGCATCTCGTCGCGGGACTT
AAGCAGGCGCATGGCTTCTAGGAAAGTGTANGCCGGCAGCAGCGGACGCT
GCTGATTGCCGCTCAATCGCAGCATGTTCTC
BS09473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-PA | 1638 | CG9581-RA | 724..1638 | 931..17 | 4537 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-RA | 1883 | CG9581-RA | 860..1779 | 931..12 | 4563 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20168146..20169065 | 12..931 | 4563 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:34:37 has no hits.
BS09473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:47 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-PA | 724..1638 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:01 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-PA | 724..1638 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:31:18 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 860..1785 | 4..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:43 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 860..1785 | 4..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:43 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20168140..20169065 | 4..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:31:18 Download gff for
BS09473.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20062173..20063098 | 4..931 | 99 | | Plus |
BS09473.5prime Sequence
915 bp (863 high quality bases) assembled on 2006-04-19
> BS09473.5prime
GAAGTTATCAGTCGACATGAATATCCTAAGGCGCCTGGACCGCCTGATCG
CTCCCACCGTCCGCCGCAGCGCCGCCATTTCCACCAGCCTGTGGCCACAC
CGCTGGATGAGCCAGTCCACCACGATCTCCCCAGGAAGTCCCAGCAGCAA
ATCGACAGTAAACGCGGCCGAGGTGCGTGGCGTGGCTCAGATTCTGCGCC
AGCAAAAGGGAAACCTGGGACAGCCCACCAGCGTCTCGCATCCACATCTT
ATCCAGCCGGACGAGCTGGTTCCGGGCGTGGAGCTGACCGAGATCAAGGA
ACGCCGTTCGCAGCTGATGCAAAACATCCGCGCCTATGCACGCAGTTTCG
GCGGCGAGTTCAATGGGCACTCGAGTTCTTGTCACATGCTCGTTCTGGGC
GCCGCCTCCAAGAAGTATATGAGCGGCAAGATCCCGTACGTGTTCCGCCA
GAACTCGGACTTCTACTACCTAACTGGCTGCCTAGAGCCGGACGCCGTGC
TACTGCTGACCATCGACGAGGCCCAGAACGTGCAGTCCGAGCTGTTTATG
CGTCCCAAGGACCCGCATGCCGAGCTGTGGGATGGTCCGCGCACTGGGCC
CGAGCTCGCGGTGCCGCTTTTCGGAGTCACTGAGGCCCATCCGCTGTCCC
AGCTGGAGGCGGTGCTGGCCAAGCGCGCAGGCGCCCTAAAACCACACATC
TGGTTCGATCAGAAGAGCACCGACCTGCCGTCCCTGGCGGAGAACATGCT
GCGATTGAGCGGCAATCAGCAGCGTCCGCTGCTGCCGGCCTACACTTTCC
TAGAAGCCATGCGCCTGCTTAAGTCCCGCGACGAGATGCAGTTAATGCGG
CGCACCTGCGACATAGCCTCACGCTCGTTCAACGAAGTGATGGGCGAGAC
CCGGCCAGGTCAGTC
BS09473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-PA | 1638 | CG9581-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-RA | 1883 | CG9581-RA | 137..1035 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20168890..20169417 | 915..388 | 2625 | 99.8 | Minus |
| X | 23542271 | X | 20169474..20169845 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:56:41 has no hits.
BS09473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:48 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:02 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:41 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 130..1035 | 9..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:05:43 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 130..1035 | 9..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:05:43 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20168890..20169416 | 389..915 | 99 | <- | Minus |
| X | 20169474..20169852 | 9..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:41 Download gff for
BS09473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20062923..20063449 | 389..915 | 99 | <- | Minus |
| arm_X | 20063507..20063885 | 9..388 | 99 | | Minus |
BS09473.complete Sequence
1670 bp assembled on 2007-10-17
GenBank Submission: FJ636428
> BS09473.complete
GAAGTTATCAGTCGACATGAATATCCTAAGGCGCCTGGACCGCCTGATCG
CTCCCACCGTCCGCCGCAGCGCCGCCATTTCCACCAGCCTGTGGCCACAC
CGCTGGATGAGCCAGTCCACCACGATCTCCCCAGGAAGTCCCAGCAGCAA
ATCGACAGTAAACGCGGCCGAGGTGCGTGGCGTGGCTCAGATTCTGCGCC
AGCAAAAGGGAAACCTGGGACAGCCCACCAGCGTCTCGCATCCACATCTT
ATCCAGCCGGACGAGCTGGTTCCGGGCGTGGAGCTGACCGAGATCAAGGA
ACGCCGTTCGCAGCTGATGCAAAACATCCGCGCCTATGCACGCAGTTTCG
GCGGCGAGTTCAATGGGCACTCGAGTTCTTGTCACATGCTCGTTCTGGGC
GCCGCCTCCAAGAAGTATATGAGCGGCAAGATCCCGTACGTGTTCCGCCA
GAACTCGGACTTCTACTACCTAACTGGCTGCCTAGAGCCGGACGCCGTGC
TACTGCTGACCATCGACGAGGCCCAGAACGTGCAGTCCGAGCTGTTTATG
CGTCCCAAGGACCCGCATGCCGAGCTGTGGGATGGTCCGCGCACTGGGCC
CGAGCTCGCGGTGCCGCTTTTCGGAGTCACTGAGGCCCATCCGCTGTCCC
AGCTGGAGGCGGTGCTGGCCAAGCGCGCAGGCGCCCTAAAACCACACATC
TGGTTCGATCAGAAGAGCACCGACCTGCCGTCCCTGGCGGAGAACATGCT
GCGATTGAGCGGCAATCAGCAGCGTCCGCTGCTGCCGGCCTACACTTTCC
TAGAAGCCATGCGCCTGCTTAAGTCCCGCGACGAGATGCAGTTAATGCGG
CGCACCTGCGACATAGCCTCACGCTCGTTCAACGAAGTGATGGCCGAGAC
CCGGCCAGGTCAGTCGGAGCACCATCTGTTCGCCGCGATTGACTACAAGT
GCCGCATGCGCAACGCCAGCTACCTGGCCTACCCGCCGGTGGTGGCTGCC
GGTAAAAACGCCACGGTGATCCACTACGTGGCCAACAGCCAGTTGTTGGG
TCAGCAGGATCTCGTGCTGATGGACGCCGGCTGCGAGTATGGCGGCTACA
CCAGCGACATCACACGCACCTGGCCGGCGAGTGGGGTTTTCACGGAGCCG
CAGCGCACACTGTACGACATGCTGCACCAGCTGCAGGAGGAGATTATTGG
CAACGTGATGAAGCCGGGCGGCGAGACGCTCGACCAGCTGTTCGAGACCA
CCTGCTACAAGCTGGGCAAGTACTTGCAGGAGATCGGGCTGGTGGGCAAG
TCGTTCAGCGAGTACAAGGAACTGGTCAGCCAGGGCTACCGCTTCTGTCC
GCACCACGTCTCCCACTACCTTGGGATGGACGTGCACGACACACCGCACG
TGCCACGCAACACACGCATCGTGCCCGGCATGGTCTTCACCGTTGAGCCG
GGCATCTACATTGGCCAGGATTGCGGCGACGTGCCGCCCGAGTTCCGGGG
CATCGGCATCCGCATCGAAGACGATCTGCTCATCAACGAGAACGGCCACG
TGGAAGTTCTAACTGAGGCGTGCGTCAAGGATCCACGCGCCCTGCAGGAG
CTTTGCAAACAGCAACAGAAGAACCCCGGTGCCTCATCCGCGGAGGCGTT
TTAAAAGCTTTCTAGACCAT
BS09473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-RA | 1638 | CG9581-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-RA | 1883 | CG9581-RA | 137..1779 | 17..1659 | 8200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20168146..20169417 | 1659..388 | 6345 | 99.9 | Minus |
| X | 23542271 | X | 20169474..20169845 | 388..17 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:12 has no hits.
BS09473.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:19 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:22 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 129..1784 | 9..1667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:15 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 137..1772 | 17..1652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:02 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 136..1771 | 17..1652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:27 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9581-RA | 137..1772 | 17..1652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:27 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20169474..20169845 | 17..388 | 100 | | Minus |
| X | 20168153..20169416 | 389..1652 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:15 Download gff for
BS09473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20062186..20063449 | 389..1652 | 100 | <- | Minus |
| arm_X | 20063507..20063878 | 17..388 | 100 | | Minus |
BS09473.pep Sequence
Translation from 16 to 1653
> BS09473.pep
MNILRRLDRLIAPTVRRSAAISTSLWPHRWMSQSTTISPGSPSSKSTVNA
AEVRGVAQILRQQKGNLGQPTSVSHPHLIQPDELVPGVELTEIKERRSQL
MQNIRAYARSFGGEFNGHSSSCHMLVLGAASKKYMSGKIPYVFRQNSDFY
YLTGCLEPDAVLLLTIDEAQNVQSELFMRPKDPHAELWDGPRTGPELAVP
LFGVTEAHPLSQLEAVLAKRAGALKPHIWFDQKSTDLPSLAENMLRLSGN
QQRPLLPAYTFLEAMRLLKSRDEMQLMRRTCDIASRSFNEVMAETRPGQS
EHHLFAAIDYKCRMRNASYLAYPPVVAAGKNATVIHYVANSQLLGQQDLV
LMDAGCEYGGYTSDITRTWPASGVFTEPQRTLYDMLHQLQEEIIGNVMKP
GGETLDQLFETTCYKLGKYLQEIGLVGKSFSEYKELVSQGYRFCPHHVSH
YLGMDVHDTPHVPRNTRIVPGMVFTVEPGIYIGQDCGDVPPEFRGIGIRI
EDDLLINENGHVEVLTEACVKDPRALQELCKQQQKNPGASSAEAF*
BS09473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9581-PA | 545 | CG9581-PA | 1..545 | 1..545 | 2862 | 100 | Plus |
| CG32454-PA | 534 | CG32454-PA | 89..501 | 92..530 | 365 | 28.1 | Plus |
| Dip-C-PB | 491 | CG5663-PB | 45..465 | 124..510 | 304 | 27.4 | Plus |
| Dip-C-PA | 491 | CG5663-PA | 45..465 | 124..510 | 304 | 27.4 | Plus |
