Clone Sequence Records
BS09474.5prime Sequence
576 bp (533 high quality bases) assembled on 2006-04-19
> BS09474.5prime
GAAGTTATCAGTCGTCATGGTCACATTGCGCTTCCTGACTCCTCGCAGGA
TCGTCGACTATTGTCGTCGTCTGCTGAGCACGGACCTGGTCACGGCCCTT
CGTCCGTTCTACCAGGCCATTCGGACGGATGGCCTGGCTCACAATCCGGC
AGAGAAGCGGGTTAACGAGGAGTCACTACGTCTGCTTTGCTCCCATCTGG
AATCCCTGACTGGGCCGTCGGCAAGTTGTCTTCCGCCCGATGGCCATTTG
GAGTTCTATATTCCATCGGGCTCGGATGAGTCCGGTAGTCGGGTGGTTAG
TCGACTGGTTAGGGTGCAGGTAGACCGGAGTTTATTGGATCCCAGGGCGG
TGATTTGCCAGATTCTGAGGTCATGTAAGCTGCTGCCGAAGGAAAAGGAG
CAGGAACAAATGAAGCGGGGTCAGGAGATGGAAAAGGAGCTCGGAAAAGT
GCTGAGAAAGGAACCGGTGAGGGAAAGGGTGAGACCGCCCCAAGCGCCAG
TGCAAAAGAATTTGAGTGCCTTAAGGGAACTCTTTAAGGATGCCAAAAGG
GAGCACTCTTTGGAAATATGGATGCG
BS09474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-PA | 1476 | CG2854-RA | 1..560 | 17..576 | 2800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-RA | 1643 | CG2854-RA | 80..639 | 17..576 | 2800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2327207..2327609 | 17..419 | 2015 | 100 | Plus |
X | 23542271 | X | 2327779..2327937 | 418..576 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:44:53 has no hits.
BS09474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:50 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-PA | 1..560 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:05 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-PA | 1..560 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:26:31 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..639 | 17..576 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:16 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..639 | 17..576 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:16 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2327207..2327608 | 17..418 | 100 | -> | Plus |
X | 2327780..2327937 | 419..576 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:26:31 Download gff for
BS09474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2221240..2221641 | 17..418 | 100 | -> | Plus |
arm_X | 2221813..2221970 | 419..576 | 100 | | Plus |
BS09474.3prime Sequence
270 bp (221 high quality bases) assembled on 2006-04-19
> BS09474.3prime
ATGGTCTAGAAAGCTTCTACTTCTCGCGTGACATAAAGTCCCAGGGAATG
CAGACGATGCCATCGGTGGGCACTGACCAATAGTTCGTGATGTGCAGACT
GAGACCGCGACAGGACTTGACGCCACTCTGAAGCAGATGCCGTATGGCCA
TGACCATCTTGTCCGGCGTTACAGAGTCGTCCTTGCTGAGTCGCTGCAAG
CCAAGTTCCTCCTGGCACTGTCGCCCACATTGCCGCTCCACCTGGATATC
CCTGCGATAGCGACTGAACC
BS09474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-PA | 1476 | CG2854-RA | 1268..1476 | 225..17 | 1045 | 100 | Minus |
CG2854-PA | 1476 | CG2854-RA | 1223..1264 | 270..229 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-RA | 1643 | CG2854-RA | 1302..1555 | 270..17 | 1225 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2328600..2328853 | 270..17 | 1225 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:44 has no hits.
BS09474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:49 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-PA | 1223..1476 | 17..270 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:03 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-PA | 1223..1476 | 17..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:54:19 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 1302..1563 | 8..270 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:24 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 1302..1563 | 8..270 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:24 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2328600..2328861 | 8..270 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:54:19 Download gff for
BS09474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2222633..2222894 | 8..270 | 97 | | Minus |
BS09474.complete Sequence
1508 bp assembled on 2008-08-14
GenBank Submission: FJ636429
> BS09474.complete
GAAGTTATCAGTCGTCATGGTCACATTGCGCTTCCTGACTCCTCGCAGGA
TCGTCGACTATTGTCGTCGTCTGCTGAGCACGGACCTGGTCACGGCCCTT
CGTCCGTTCTACCAGGCCATTCGGACGGATGGCCTGGCTCACAATCCGGC
AGAGAAGCGGGTTAACGAGGAGTCACTACGTCTGCTTTGCTCCCATCTGG
AATCCCTGACTGGGCCGTCGGCAAGTTGTCTTCCGCCCGATGGCCATTTG
GAGTTCTATATTCCATCGGGCTCGGATGAGTCCGGTAGTCGGGTGGTTAG
TCGACTGGTTAGGGTGCAGGTAGACCGGAGTTTATTGGATCCCAGGGCGG
TGATTTGCCAGATTCTGAGGTCATGTAAGCTGCTGCCGAAGGAAAAGGAG
CAGGAACAAATGAAGCGGGGTCAGGAGATGGAAAAGGAGCTCGGAAAAGT
GCTGAGAAAGGAACCGGTGAGGGAAAGGGTGAGACCGCCCCAAGCGCCAG
TGCAAAAGAATTTGAGTGCCTTAAGGGAACTCTTTAAGGATGCCAAAAGG
GAGCACTCTTTGGAAATATGGATGCGTCAGGCCCTGGCACGTTCCCAGGC
CTCCGAAGTCGCTACTCTACGCGGCAAAATCGAGGGCATTGAAGCGGCTT
TGGTCCAGTTGTTGGGCATTCGGGGAACCCGTTACGATTGTGGCTGCAAC
ATGGAACGCTACCACAACTGCCTCAGCATCCTCAAGGGCTTGTCCGAGGA
TCCGAAGGTCGCCGGCCAGCTGGGAGCCCTTCGCAATCGTTTTGTGGTCT
TCGCACCGTACACTGGTATTAGCTTGGAGGGCGATGTAATGCTCTTTTCG
GGCGACTCCCCCTCGGGTTGGCTGGCCTTCCTCTCCGAGATGCGTTTGCA
CGAGGAGCAACTGAGACTGGTGCCCCTGTACGAGAAAGCCCTGTCTGCCG
TGCTCCTTGGCATACGGATTGAGAGGCGTAGGGTTCCGGAGCCGGGCTGT
GAGGCGCGTGCCTATGCGGGCAGCTTGAGGCGCGTGATCCGTGCGGTCAG
TGAGCACCTGAGGCTGGAGGATAGTGTCCAGGAGTTGCCGGCATCGCTGC
AGGACCATCATTTGGCCATTGTGCCGGATAGTGATATACCGAAGGTTAGC
CAAACCGGTCTCTTCTTGGCCCCGGCCTCCTGCTCCGGACCCGATCTCGT
GGAGTTCATATGCCGGAACTTGGACGTGGCCAGCGGGCGGTTCAGTCGCT
ATCGCAGGGATATCCAGGTGGAGCGGCAATTGTGGCGACAGTGCCAGGAG
GAACTTGGCTTGCAGCGACTCAGCAAGGACGACTCTGTAACGCCGGACAA
GATGGTCATGGCCATACGGCATCTGCTTCAGAGTGGCGTCAAGTCCTGTC
GCGGTCTCAGTCTGCACATCACGAACTATTGGTCAGTGCCCACCGATGGC
ATCGTCTGCATTCCCTGGGACTTTATGTCACGCGAGAAGTAGAAGCTTTC
TAGACCAT
BS09474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-RA | 1476 | CG2854-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-RA | 1643 | CG2854-RA | 80..1555 | 17..1492 | 7380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2327779..2328853 | 418..1492 | 5375 | 100 | Plus |
X | 23542271 | X | 2327207..2327609 | 17..419 | 2015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:08 has no hits.
BS09474.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:35 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..1563 | 17..1501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:48 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..1555 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:49 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..1555 | 17..1492 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:50 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2854-RA | 80..1555 | 17..1492 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:50 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2327207..2327608 | 17..418 | 100 | -> | Plus |
X | 2327780..2328853 | 419..1492 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:48 Download gff for
BS09474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2221240..2221641 | 17..418 | 100 | -> | Plus |
arm_X | 2221813..2222886 | 419..1492 | 100 | | Plus |
BS09474.pep Sequence
Translation from 16 to 1491
> BS09474.pep
MVTLRFLTPRRIVDYCRRLLSTDLVTALRPFYQAIRTDGLAHNPAEKRVN
EESLRLLCSHLESLTGPSASCLPPDGHLEFYIPSGSDESGSRVVSRLVRV
QVDRSLLDPRAVICQILRSCKLLPKEKEQEQMKRGQEMEKELGKVLRKEP
VRERVRPPQAPVQKNLSALRELFKDAKREHSLEIWMRQALARSQASEVAT
LRGKIEGIEAALVQLLGIRGTRYDCGCNMERYHNCLSILKGLSEDPKVAG
QLGALRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLR
LVPLYEKALSAVLLGIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHLRL
EDSVQELPASLQDHHLAIVPDSDIPKVSQTGLFLAPASCSGPDLVEFICR
NLDVASGRFSRYRRDIQVERQLWRQCQEELGLQRLSKDDSVTPDKMVMAI
RHLLQSGVKSCRGLSLHITNYWSVPTDGIVCIPWDFMSREK*
BS09474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2854-PA | 491 | CG2854-PA | 1..491 | 1..491 | 2525 | 100 | Plus |
CG13295-PA | 485 | CG13295-PA | 11..485 | 5..489 | 763 | 37.4 | Plus |