Clone BS09474 Report

Search the DGRC for BS09474

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG2854-RA
Protein status:BS09474.pep: full length peptide match
Sequenced Size:1508

Clone Sequence Records

BS09474.5prime Sequence

576 bp (533 high quality bases) assembled on 2006-04-19

> BS09474.5prime
GAAGTTATCAGTCGTCATGGTCACATTGCGCTTCCTGACTCCTCGCAGGA
TCGTCGACTATTGTCGTCGTCTGCTGAGCACGGACCTGGTCACGGCCCTT
CGTCCGTTCTACCAGGCCATTCGGACGGATGGCCTGGCTCACAATCCGGC
AGAGAAGCGGGTTAACGAGGAGTCACTACGTCTGCTTTGCTCCCATCTGG
AATCCCTGACTGGGCCGTCGGCAAGTTGTCTTCCGCCCGATGGCCATTTG
GAGTTCTATATTCCATCGGGCTCGGATGAGTCCGGTAGTCGGGTGGTTAG
TCGACTGGTTAGGGTGCAGGTAGACCGGAGTTTATTGGATCCCAGGGCGG
TGATTTGCCAGATTCTGAGGTCATGTAAGCTGCTGCCGAAGGAAAAGGAG
CAGGAACAAATGAAGCGGGGTCAGGAGATGGAAAAGGAGCTCGGAAAAGT
GCTGAGAAAGGAACCGGTGAGGGAAAGGGTGAGACCGCCCCAAGCGCCAG
TGCAAAAGAATTTGAGTGCCTTAAGGGAACTCTTTAAGGATGCCAAAAGG
GAGCACTCTTTGGAAATATGGATGCG

BS09474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-PA 1476 CG2854-RA 1..560 17..576 2800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-RA 1643 CG2854-RA 80..639 17..576 2800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2327207..2327609 17..419 2015 100 Plus
X 23542271 X 2327779..2327937 418..576 795 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:44:53 has no hits.

BS09474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:50 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-PA 1..560 17..576 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:05 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-PA 1..560 17..576 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:26:31 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..639 17..576 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:16 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..639 17..576 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:16 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2327207..2327608 17..418 100 -> Plus
X 2327780..2327937 419..576 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:26:31 Download gff for BS09474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2221240..2221641 17..418 100 -> Plus
arm_X 2221813..2221970 419..576 100   Plus

BS09474.3prime Sequence

270 bp (221 high quality bases) assembled on 2006-04-19

> BS09474.3prime
ATGGTCTAGAAAGCTTCTACTTCTCGCGTGACATAAAGTCCCAGGGAATG
CAGACGATGCCATCGGTGGGCACTGACCAATAGTTCGTGATGTGCAGACT
GAGACCGCGACAGGACTTGACGCCACTCTGAAGCAGATGCCGTATGGCCA
TGACCATCTTGTCCGGCGTTACAGAGTCGTCCTTGCTGAGTCGCTGCAAG
CCAAGTTCCTCCTGGCACTGTCGCCCACATTGCCGCTCCACCTGGATATC
CCTGCGATAGCGACTGAACC

BS09474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-PA 1476 CG2854-RA 1268..1476 225..17 1045 100 Minus
CG2854-PA 1476 CG2854-RA 1223..1264 270..229 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-RA 1643 CG2854-RA 1302..1555 270..17 1225 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2328600..2328853 270..17 1225 98.8 Minus
Blast to na_te.dros performed on 2015-02-10 21:00:44 has no hits.

BS09474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:49 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-PA 1223..1476 17..270 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:03 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-PA 1223..1476 17..270 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:54:19 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1302..1563 8..270 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:24 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 1302..1563 8..270 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:24 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2328600..2328861 8..270 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:54:19 Download gff for BS09474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2222633..2222894 8..270 97   Minus

BS09474.complete Sequence

1508 bp assembled on 2008-08-14

GenBank Submission: FJ636429

> BS09474.complete
GAAGTTATCAGTCGTCATGGTCACATTGCGCTTCCTGACTCCTCGCAGGA
TCGTCGACTATTGTCGTCGTCTGCTGAGCACGGACCTGGTCACGGCCCTT
CGTCCGTTCTACCAGGCCATTCGGACGGATGGCCTGGCTCACAATCCGGC
AGAGAAGCGGGTTAACGAGGAGTCACTACGTCTGCTTTGCTCCCATCTGG
AATCCCTGACTGGGCCGTCGGCAAGTTGTCTTCCGCCCGATGGCCATTTG
GAGTTCTATATTCCATCGGGCTCGGATGAGTCCGGTAGTCGGGTGGTTAG
TCGACTGGTTAGGGTGCAGGTAGACCGGAGTTTATTGGATCCCAGGGCGG
TGATTTGCCAGATTCTGAGGTCATGTAAGCTGCTGCCGAAGGAAAAGGAG
CAGGAACAAATGAAGCGGGGTCAGGAGATGGAAAAGGAGCTCGGAAAAGT
GCTGAGAAAGGAACCGGTGAGGGAAAGGGTGAGACCGCCCCAAGCGCCAG
TGCAAAAGAATTTGAGTGCCTTAAGGGAACTCTTTAAGGATGCCAAAAGG
GAGCACTCTTTGGAAATATGGATGCGTCAGGCCCTGGCACGTTCCCAGGC
CTCCGAAGTCGCTACTCTACGCGGCAAAATCGAGGGCATTGAAGCGGCTT
TGGTCCAGTTGTTGGGCATTCGGGGAACCCGTTACGATTGTGGCTGCAAC
ATGGAACGCTACCACAACTGCCTCAGCATCCTCAAGGGCTTGTCCGAGGA
TCCGAAGGTCGCCGGCCAGCTGGGAGCCCTTCGCAATCGTTTTGTGGTCT
TCGCACCGTACACTGGTATTAGCTTGGAGGGCGATGTAATGCTCTTTTCG
GGCGACTCCCCCTCGGGTTGGCTGGCCTTCCTCTCCGAGATGCGTTTGCA
CGAGGAGCAACTGAGACTGGTGCCCCTGTACGAGAAAGCCCTGTCTGCCG
TGCTCCTTGGCATACGGATTGAGAGGCGTAGGGTTCCGGAGCCGGGCTGT
GAGGCGCGTGCCTATGCGGGCAGCTTGAGGCGCGTGATCCGTGCGGTCAG
TGAGCACCTGAGGCTGGAGGATAGTGTCCAGGAGTTGCCGGCATCGCTGC
AGGACCATCATTTGGCCATTGTGCCGGATAGTGATATACCGAAGGTTAGC
CAAACCGGTCTCTTCTTGGCCCCGGCCTCCTGCTCCGGACCCGATCTCGT
GGAGTTCATATGCCGGAACTTGGACGTGGCCAGCGGGCGGTTCAGTCGCT
ATCGCAGGGATATCCAGGTGGAGCGGCAATTGTGGCGACAGTGCCAGGAG
GAACTTGGCTTGCAGCGACTCAGCAAGGACGACTCTGTAACGCCGGACAA
GATGGTCATGGCCATACGGCATCTGCTTCAGAGTGGCGTCAAGTCCTGTC
GCGGTCTCAGTCTGCACATCACGAACTATTGGTCAGTGCCCACCGATGGC
ATCGTCTGCATTCCCTGGGACTTTATGTCACGCGAGAAGTAGAAGCTTTC
TAGACCAT

BS09474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-RA 1476 CG2854-PA 1..1476 17..1492 7380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-RA 1643 CG2854-RA 80..1555 17..1492 7380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2327779..2328853 418..1492 5375 100 Plus
X 23542271 X 2327207..2327609 17..419 2015 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:08 has no hits.

BS09474.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:18:35 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..1563 17..1501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:48 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..1555 17..1492 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:49 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..1555 17..1492 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:50 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
CG2854-RA 80..1555 17..1492 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:50 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
X 2327207..2327608 17..418 100 -> Plus
X 2327780..2328853 419..1492 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:48 Download gff for BS09474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2221240..2221641 17..418 100 -> Plus
arm_X 2221813..2222886 419..1492 100   Plus

BS09474.pep Sequence

Translation from 16 to 1491

> BS09474.pep
MVTLRFLTPRRIVDYCRRLLSTDLVTALRPFYQAIRTDGLAHNPAEKRVN
EESLRLLCSHLESLTGPSASCLPPDGHLEFYIPSGSDESGSRVVSRLVRV
QVDRSLLDPRAVICQILRSCKLLPKEKEQEQMKRGQEMEKELGKVLRKEP
VRERVRPPQAPVQKNLSALRELFKDAKREHSLEIWMRQALARSQASEVAT
LRGKIEGIEAALVQLLGIRGTRYDCGCNMERYHNCLSILKGLSEDPKVAG
QLGALRNRFVVFAPYTGISLEGDVMLFSGDSPSGWLAFLSEMRLHEEQLR
LVPLYEKALSAVLLGIRIERRRVPEPGCEARAYAGSLRRVIRAVSEHLRL
EDSVQELPASLQDHHLAIVPDSDIPKVSQTGLFLAPASCSGPDLVEFICR
NLDVASGRFSRYRRDIQVERQLWRQCQEELGLQRLSKDDSVTPDKMVMAI
RHLLQSGVKSCRGLSLHITNYWSVPTDGIVCIPWDFMSREK*

BS09474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2854-PA 491 CG2854-PA 1..491 1..491 2525 100 Plus
CG13295-PA 485 CG13295-PA 11..485 5..489 763 37.4 Plus