Clone BS09476 Report

Search the DGRC for BS09476

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG15208-RA
Protein status:BS09476.pep: full length peptide match
Sequenced Size:1130

Clone Sequence Records

BS09476.3prime Sequence

931 bp (859 high quality bases) assembled on 2006-04-19

> BS09476.3prime
ATGGTCTAGAAAGCTTTTAATTTAGTTGGACGAACTGTTCGATGATGGCG
AGGACTAGAGTCTCCAGTTGGGATGCGTTCATATCTTGGATGAGTAACAA
AGCCGCCGACAAACTGTTATTATGCCGCTCCAAAGTTGTGGAATTAGCGC
CATTCAATGCTAACCCAGAGGATACATTGGGCAACAGATGTCCGGGTGGG
GTCACCACATCTTGGCGTCGCGAATTGATCAGCTCGATAAGATTTTCGGC
TAAAGTCGAGGTAGAAGCGGCAGGGCTGTCGGCGTTCCGATCCGATGAAA
TTGACTGAATACCCTGAACCTGTTCGTGCACAGCCTGCGGAGTCATCGTA
AACTTATGAGCCTGCTGAACCTGCTCATTATGCCAAATCGGCTGATTCTT
TTGCTTCCGAAGCGCATCCTGAGCTTTTTGAGCCTGACGCACCTGACGCA
AATCGGACGGAAAGAACAGAGGCAAGCGTTCACCATTCACCAACACCGAT
CTACTTCTAATTCGAGCTAGTTCGTCAATATTTTTGGCATCCCCGCTAGC
GAATCTTTTCCTTTGCTGCTGCTGGACCTGACGGATCGTCCGATCGCACT
GTTCGATCATATCGCGGTATGCCATGTCATCGGGACTGCAGTTGCTTAAA
TCCAAAACAGGATTAAGGATCGCACTCCCTACGTCCGGGTAGTAATCGTA
TCGCANAGCGGATTCCAGCTCCTCTTCGGCAACATCTACGTTGTCCAGCT
TCTTTAGATTCGGCAGCATTCGTAGCACAGATGCCCGATAGTTGGAGCCA
GCGGCAATAGAGCATGGATTGTCCAGCAGCCAGAGGGATGTGAGGGATTT
GGCATTGACTAGATATTTCAGCTCATCAAAGTCTGCTATCTCGTTCTGGC
GCAAGTACAGCTCCTTCAGTCGAGTGCATCT

BS09476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-PA 1098 CG15208-RA 184..1098 931..17 4531 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-RC 1480 CG15208-RC 381..1295 931..17 4549 99.8 Minus
CG15208-RB 1698 CG15208-RB 681..1595 931..17 4549 99.8 Minus
CG15208-RA 1398 CG15208-RA 381..1295 931..17 4549 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10900712..10901626 931..17 4549 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:23:31 has no hits.

BS09476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:53 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-PA 184..1098 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:10 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-PA 184..1098 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:54 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 353..1272 9..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:10 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 381..1300 9..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:10 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10900712..10901631 9..931 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:54 Download gff for BS09476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10794745..10795664 9..931 99   Minus

BS09476.5prime Sequence

879 bp (848 high quality bases) assembled on 2006-04-19

> BS09476.5prime
GAAGTTATCAGTCGACATGGAGAAGCAACTAACAGAGCACATGGTGGAAA
GCATGTCCAGGTGCAGGGACTATGCCAAGGCCTTGAAGTTGAATTTCTGT
AACTGCGGCCTGAATGACATAAGTCTCTGCCTCAAGATGCCGTACCTGGA
GGTCCTTTCGCTTAGCATGAACAAGATCACTTCATTGAAAAGCCTGGTGA
GATGCACTCGACTGAAGGAGCTGTACTTGCGCCAGAACGAGATAGCAGAC
TTTGATGAGCTGAAATATCTAGTCAATGCCAAATCCCTCACATCCCTCTG
GCTGCTGGACAATCCATGCTCTATTGCCGCTGGCTCCAACTATCGGGCAT
CTGTGCTACGAATGCTGCCGAATCTAAAGAAGCTGGACAACGTAGATGTT
GCCGAAGAGGAGCTGGAATCCGCTTTGCGATACGATTACTACCCGGACGT
AGGGAGTGCGATCCTTAATCCTGTTTTGGATTTAAGCAACTGCAGTCCCG
ATGACATGGCATACCGCGATATGATCGAACAGTGCGATCGGACGATCCGT
CAGGTCCAGCAGCAGCAAAGGAAAAGATTCGCTAGCGGGGATGCCAAAAA
TATTGACGAACTAGCTCGAATTAGAAGTAGATCGGTGTTGGTGAATGGTG
AACGCTTGCCTCTGTTCTTTCCGTCCGATTTGCGTCAGGTGCGTCAGGCT
CAAAAAGCTCAGGATGCGCTTCGGAAGCAAAAGAATCAGCCGATTTGGCA
TAATGAGCAGGTTCAGCAGGCTCATAAGTTTACGATGACTCCGCANGCTG
TGCACGAACAGGTTCAGGGTATTCAGTCAATTTCATCGGATCGGAACGCC
GACAGCCCTGCCGCTTCTACCTCGACTTT

BS09476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-PA 1098 CG15208-RA 1..863 17..879 4296 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-RC 1480 CG15208-RC 198..1060 17..879 4304 99.9 Plus
CG15208-RB 1698 CG15208-RB 498..1360 17..879 4304 99.9 Plus
CG15208-RA 1398 CG15208-RA 198..1060 17..879 4304 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10900529..10901391 17..879 4304 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 19:56:41 has no hits.

BS09476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:54 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:11 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-PA 1..863 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:59 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 162..1032 8..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:27 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 190..1060 8..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:27 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10900521..10901391 8..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:59 Download gff for BS09476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10794554..10795424 8..879 99   Plus

BS09476.complete Sequence

1130 bp assembled on 2008-08-15

GenBank Submission: FJ636430

> BS09476.complete
GAAGTTATCAGTCGACATGGAGAAGCAACTAACAGAGCACATGGTGGAAA
GCATGTCCAGGTGCAGGGACTATGCCAAGGCCTTGAAGTTGAATTTCTGT
AACTGCGGCCTGAATGACATAAGTCTCTGCCTCAAGATGCCGTACCTGGA
GGTCCTTTCGCTTAGCATGAACAAGATCACTTCATTGAAAAGCCTGGTGA
GATGCACTCGACTGAAGGAGCTGTACTTGCGCCAGAACGAGATAGCAGAC
TTTGATGAGCTGAAATATCTAGTCAATGCCAAATCCCTCACATCCCTCTG
GCTGCTGGACAATCCATGCTCTATTGCCGCTGGCTCCAACTATCGGGCAT
CTGTGCTACGAATGCTGCCGAATCTAAAGAAGCTGGACAACGTAGATGTT
GCCGAAGAGGAGCTGGAATCCGCTTTGCGATACGATTACTACCCGGACGT
AGGGAGTGCGATCCTTAATCCTGTTTTGGATTTAAGCAACTGCAGTCCCG
ATGACATGGCATACCGCGATATGATCGAACAGTGCGATCGGACGATCCGT
CAGGTCCAGCAGCAGCAAAGGAAAAGATTCGCTAGCGGGGATGCCAAAAA
TATTGACGAACTAGCTCGAATTAGAAGTAGATCGGTGTTGGTGAATGGTG
AACGCTTGCCTCTGTTCTTTCCGTCCGATTTGCGTCAGGTGCGTCAGGCT
CAAAAAGCTCAGGATGCGCTTCGGAAGCAAAAGAATCAGCCGATTTGGCA
TAATGAGCAGGTTCAGCAGGCTCATAAGTTTACGATGACTCCGCAGGCTG
TGCACGAACAGGTTCAGGGTATTCAGTCAATTTCATCGGATCGGAACGCC
GACAGCCCTGCCGCTTCTACCTCGACTTTAGCCGAAAATCTTATCGAGCT
GATCAATTCGCGACGCCAAGATGTGGTGACCCCACCCGGACATCTGTTGC
CCAATGTATCCTCTGGGTTAGCATTGAATGGCGCTAATTCCACAACTTTG
GAGCGGCATAATAACAGTTTGTCGGCGGCTTTGTTACTCATCCAAGATAT
GAACGCATCCCAACTGGAGACTCTAGTCCTCGCCATCATCGAACAGTTCG
TCCAACTAAATTAAAAGCTTTCTAGACCAT

BS09476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-RC 1098 CG15208-PC 1..1098 17..1114 5475 99.9 Plus
CG15208-RB 1098 CG15208-PB 1..1098 17..1114 5475 99.9 Plus
CG15208-RA 1098 CG15208-PA 1..1098 17..1114 5475 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-RC 1480 CG15208-RC 198..1295 17..1114 5475 99.9 Plus
CG15208-RB 1698 CG15208-RB 498..1595 17..1114 5475 99.9 Plus
CG15208-RA 1398 CG15208-RA 198..1295 17..1114 5475 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10900529..10901626 17..1114 5475 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 19:55:51 has no hits.

BS09476.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:51 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 162..1272 8..1122 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:03 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 170..1265 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:54 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 170..1265 17..1112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:02 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
CG15208-RA 198..1293 17..1112 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:02 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
X 10900529..10901624 17..1112 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:03 Download gff for BS09476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10794562..10795657 17..1112 99   Plus

BS09476.pep Sequence

Translation from 16 to 1113

> BS09476.pep
MEKQLTEHMVESMSRCRDYAKALKLNFCNCGLNDISLCLKMPYLEVLSLS
MNKITSLKSLVRCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNP
CSIAAGSNYRASVLRMLPNLKKLDNVDVAEEELESALRYDYYPDVGSAIL
NPVLDLSNCSPDDMAYRDMIEQCDRTIRQVQQQQRKRFASGDAKNIDELA
RIRSRSVLVNGERLPLFFPSDLRQVRQAQKAQDALRKQKNQPIWHNEQVQ
QAHKFTMTPQAVHEQVQGIQSISSDRNADSPAASTSTLAENLIELINSRR
QDVVTPPGHLLPNVSSGLALNGANSTTLERHNNSLSAALLLIQDMNASQL
ETLVLAIIEQFVQLN*

BS09476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15208-PC 365 CG15208-PC 1..365 1..365 1846 100 Plus
CG15208-PB 365 CG15208-PB 1..365 1..365 1846 100 Plus
CG15208-PA 365 CG15208-PA 1..365 1..365 1846 100 Plus
CG14995-PD 354 CG14995-PD 3..344 4..357 377 30.9 Plus
CG14995-PG 362 CG14995-PG 3..352 4..357 373 30.5 Plus