Clone Sequence Records
BS09476.3prime Sequence
931 bp (859 high quality bases) assembled on 2006-04-19
> BS09476.3prime
ATGGTCTAGAAAGCTTTTAATTTAGTTGGACGAACTGTTCGATGATGGCG
AGGACTAGAGTCTCCAGTTGGGATGCGTTCATATCTTGGATGAGTAACAA
AGCCGCCGACAAACTGTTATTATGCCGCTCCAAAGTTGTGGAATTAGCGC
CATTCAATGCTAACCCAGAGGATACATTGGGCAACAGATGTCCGGGTGGG
GTCACCACATCTTGGCGTCGCGAATTGATCAGCTCGATAAGATTTTCGGC
TAAAGTCGAGGTAGAAGCGGCAGGGCTGTCGGCGTTCCGATCCGATGAAA
TTGACTGAATACCCTGAACCTGTTCGTGCACAGCCTGCGGAGTCATCGTA
AACTTATGAGCCTGCTGAACCTGCTCATTATGCCAAATCGGCTGATTCTT
TTGCTTCCGAAGCGCATCCTGAGCTTTTTGAGCCTGACGCACCTGACGCA
AATCGGACGGAAAGAACAGAGGCAAGCGTTCACCATTCACCAACACCGAT
CTACTTCTAATTCGAGCTAGTTCGTCAATATTTTTGGCATCCCCGCTAGC
GAATCTTTTCCTTTGCTGCTGCTGGACCTGACGGATCGTCCGATCGCACT
GTTCGATCATATCGCGGTATGCCATGTCATCGGGACTGCAGTTGCTTAAA
TCCAAAACAGGATTAAGGATCGCACTCCCTACGTCCGGGTAGTAATCGTA
TCGCANAGCGGATTCCAGCTCCTCTTCGGCAACATCTACGTTGTCCAGCT
TCTTTAGATTCGGCAGCATTCGTAGCACAGATGCCCGATAGTTGGAGCCA
GCGGCAATAGAGCATGGATTGTCCAGCAGCCAGAGGGATGTGAGGGATTT
GGCATTGACTAGATATTTCAGCTCATCAAAGTCTGCTATCTCGTTCTGGC
GCAAGTACAGCTCCTTCAGTCGAGTGCATCT
BS09476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-PA | 1098 | CG15208-RA | 184..1098 | 931..17 | 4531 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-RC | 1480 | CG15208-RC | 381..1295 | 931..17 | 4549 | 99.8 | Minus |
CG15208-RB | 1698 | CG15208-RB | 681..1595 | 931..17 | 4549 | 99.8 | Minus |
CG15208-RA | 1398 | CG15208-RA | 381..1295 | 931..17 | 4549 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10900712..10901626 | 931..17 | 4549 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:31 has no hits.
BS09476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:53 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-PA | 184..1098 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:10 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-PA | 184..1098 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:30:54 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 353..1272 | 9..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:10 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 381..1300 | 9..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:10 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10900712..10901631 | 9..931 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:30:54 Download gff for
BS09476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10794745..10795664 | 9..931 | 99 | | Minus |
BS09476.5prime Sequence
879 bp (848 high quality bases) assembled on 2006-04-19
> BS09476.5prime
GAAGTTATCAGTCGACATGGAGAAGCAACTAACAGAGCACATGGTGGAAA
GCATGTCCAGGTGCAGGGACTATGCCAAGGCCTTGAAGTTGAATTTCTGT
AACTGCGGCCTGAATGACATAAGTCTCTGCCTCAAGATGCCGTACCTGGA
GGTCCTTTCGCTTAGCATGAACAAGATCACTTCATTGAAAAGCCTGGTGA
GATGCACTCGACTGAAGGAGCTGTACTTGCGCCAGAACGAGATAGCAGAC
TTTGATGAGCTGAAATATCTAGTCAATGCCAAATCCCTCACATCCCTCTG
GCTGCTGGACAATCCATGCTCTATTGCCGCTGGCTCCAACTATCGGGCAT
CTGTGCTACGAATGCTGCCGAATCTAAAGAAGCTGGACAACGTAGATGTT
GCCGAAGAGGAGCTGGAATCCGCTTTGCGATACGATTACTACCCGGACGT
AGGGAGTGCGATCCTTAATCCTGTTTTGGATTTAAGCAACTGCAGTCCCG
ATGACATGGCATACCGCGATATGATCGAACAGTGCGATCGGACGATCCGT
CAGGTCCAGCAGCAGCAAAGGAAAAGATTCGCTAGCGGGGATGCCAAAAA
TATTGACGAACTAGCTCGAATTAGAAGTAGATCGGTGTTGGTGAATGGTG
AACGCTTGCCTCTGTTCTTTCCGTCCGATTTGCGTCAGGTGCGTCAGGCT
CAAAAAGCTCAGGATGCGCTTCGGAAGCAAAAGAATCAGCCGATTTGGCA
TAATGAGCAGGTTCAGCAGGCTCATAAGTTTACGATGACTCCGCANGCTG
TGCACGAACAGGTTCAGGGTATTCAGTCAATTTCATCGGATCGGAACGCC
GACAGCCCTGCCGCTTCTACCTCGACTTT
BS09476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-PA | 1098 | CG15208-RA | 1..863 | 17..879 | 4296 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-RC | 1480 | CG15208-RC | 198..1060 | 17..879 | 4304 | 99.9 | Plus |
CG15208-RB | 1698 | CG15208-RB | 498..1360 | 17..879 | 4304 | 99.9 | Plus |
CG15208-RA | 1398 | CG15208-RA | 198..1060 | 17..879 | 4304 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10900529..10901391 | 17..879 | 4304 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:56:41 has no hits.
BS09476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:10:54 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:11 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:59 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 162..1032 | 8..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:27 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 190..1060 | 8..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:27 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10900521..10901391 | 8..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:59 Download gff for
BS09476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10794554..10795424 | 8..879 | 99 | | Plus |
BS09476.complete Sequence
1130 bp assembled on 2008-08-15
GenBank Submission: FJ636430
> BS09476.complete
GAAGTTATCAGTCGACATGGAGAAGCAACTAACAGAGCACATGGTGGAAA
GCATGTCCAGGTGCAGGGACTATGCCAAGGCCTTGAAGTTGAATTTCTGT
AACTGCGGCCTGAATGACATAAGTCTCTGCCTCAAGATGCCGTACCTGGA
GGTCCTTTCGCTTAGCATGAACAAGATCACTTCATTGAAAAGCCTGGTGA
GATGCACTCGACTGAAGGAGCTGTACTTGCGCCAGAACGAGATAGCAGAC
TTTGATGAGCTGAAATATCTAGTCAATGCCAAATCCCTCACATCCCTCTG
GCTGCTGGACAATCCATGCTCTATTGCCGCTGGCTCCAACTATCGGGCAT
CTGTGCTACGAATGCTGCCGAATCTAAAGAAGCTGGACAACGTAGATGTT
GCCGAAGAGGAGCTGGAATCCGCTTTGCGATACGATTACTACCCGGACGT
AGGGAGTGCGATCCTTAATCCTGTTTTGGATTTAAGCAACTGCAGTCCCG
ATGACATGGCATACCGCGATATGATCGAACAGTGCGATCGGACGATCCGT
CAGGTCCAGCAGCAGCAAAGGAAAAGATTCGCTAGCGGGGATGCCAAAAA
TATTGACGAACTAGCTCGAATTAGAAGTAGATCGGTGTTGGTGAATGGTG
AACGCTTGCCTCTGTTCTTTCCGTCCGATTTGCGTCAGGTGCGTCAGGCT
CAAAAAGCTCAGGATGCGCTTCGGAAGCAAAAGAATCAGCCGATTTGGCA
TAATGAGCAGGTTCAGCAGGCTCATAAGTTTACGATGACTCCGCAGGCTG
TGCACGAACAGGTTCAGGGTATTCAGTCAATTTCATCGGATCGGAACGCC
GACAGCCCTGCCGCTTCTACCTCGACTTTAGCCGAAAATCTTATCGAGCT
GATCAATTCGCGACGCCAAGATGTGGTGACCCCACCCGGACATCTGTTGC
CCAATGTATCCTCTGGGTTAGCATTGAATGGCGCTAATTCCACAACTTTG
GAGCGGCATAATAACAGTTTGTCGGCGGCTTTGTTACTCATCCAAGATAT
GAACGCATCCCAACTGGAGACTCTAGTCCTCGCCATCATCGAACAGTTCG
TCCAACTAAATTAAAAGCTTTCTAGACCAT
BS09476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-RC | 1098 | CG15208-PC | 1..1098 | 17..1114 | 5475 | 99.9 | Plus |
CG15208-RB | 1098 | CG15208-PB | 1..1098 | 17..1114 | 5475 | 99.9 | Plus |
CG15208-RA | 1098 | CG15208-PA | 1..1098 | 17..1114 | 5475 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-RC | 1480 | CG15208-RC | 198..1295 | 17..1114 | 5475 | 99.9 | Plus |
CG15208-RB | 1698 | CG15208-RB | 498..1595 | 17..1114 | 5475 | 99.9 | Plus |
CG15208-RA | 1398 | CG15208-RA | 198..1295 | 17..1114 | 5475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10900529..10901626 | 17..1114 | 5475 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:55:51 has no hits.
BS09476.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:51 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 162..1272 | 8..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:03 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 170..1265 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:54 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 170..1265 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:02 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15208-RA | 198..1293 | 17..1112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:02 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10900529..10901624 | 17..1112 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:03 Download gff for
BS09476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10794562..10795657 | 17..1112 | 99 | | Plus |
BS09476.pep Sequence
Translation from 16 to 1113
> BS09476.pep
MEKQLTEHMVESMSRCRDYAKALKLNFCNCGLNDISLCLKMPYLEVLSLS
MNKITSLKSLVRCTRLKELYLRQNEIADFDELKYLVNAKSLTSLWLLDNP
CSIAAGSNYRASVLRMLPNLKKLDNVDVAEEELESALRYDYYPDVGSAIL
NPVLDLSNCSPDDMAYRDMIEQCDRTIRQVQQQQRKRFASGDAKNIDELA
RIRSRSVLVNGERLPLFFPSDLRQVRQAQKAQDALRKQKNQPIWHNEQVQ
QAHKFTMTPQAVHEQVQGIQSISSDRNADSPAASTSTLAENLIELINSRR
QDVVTPPGHLLPNVSSGLALNGANSTTLERHNNSLSAALLLIQDMNASQL
ETLVLAIIEQFVQLN*
BS09476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15208-PC | 365 | CG15208-PC | 1..365 | 1..365 | 1846 | 100 | Plus |
CG15208-PB | 365 | CG15208-PB | 1..365 | 1..365 | 1846 | 100 | Plus |
CG15208-PA | 365 | CG15208-PA | 1..365 | 1..365 | 1846 | 100 | Plus |
CG14995-PD | 354 | CG14995-PD | 3..344 | 4..357 | 377 | 30.9 | Plus |
CG14995-PG | 362 | CG14995-PG | 3..352 | 4..357 | 373 | 30.5 | Plus |