Clone Sequence Records
BS09480.3prime Sequence
890 bp (781 high quality bases) assembled on 2006-04-19
> BS09480.3prime
ATGGTCTAGAAAGCTTTTACAGGAGCAGTTCCTCGTCCGTGTGCGGCTCG
TTTCCGGTTTCCGCAAAGAGGCAACACTCATCGGAACCGGAAGAAGCGCC
CTCCTGCTCTTCGCAGTCGAGATCGAGATGATGCGCCTGCTGAGGCGACT
GTGGCGCCTGCTGGTGGTGGTTCATTGGGTGGTGCGCCGGCTGTTGTGGG
TGGCTCAGGTCGTGCAGCCAGTCCAGTGTCTTGTCAATGGCACGCAACCG
CTTCTCCAGCGAAGTAGTGGCCAAAATGTCCACCTTTAGTTGCTGGGAGA
GGGGCAGCAGGGCTATAATCCACCACGCCCACGCCGGTCCATCGCTGATC
AGCTCCCAATTTGGCTCCAGCGGTGGCATCTGGCCAAAGCTCTGCAGAAT
CTCGTGCTTCTGCTCTGTACTCAGGCTTTCGAACCATTCACTGGCTTTGG
CCAGGACGACGCCCTGCATTCCGGCCAGGATCTTCACCTGCTCATCGGCA
ATGGGTTCGTCGCAGATGTACTCCACCTTGGCCGTTTCATAGCCATCCTT
TTCGTTGCGCGCCAGGATCTTAAACCGCTTGCAACCGATGGTACTCAAAA
TGGAACAGCCATCGCCCAGCTGAACGCAGTCCCGGATGTCCAGGATGGTG
CCCACATCGTAGTAGCGTGACTTTCCGCCATTCGGTTGCACAATGCCAAA
GGTTTTGTCACCGGACTCGACGGCTCGCCGAACCATCAGCCTGTATCTGG
GTTCGCACACGAACAGGGGACACGGAACTGCCGGAAAGGCTGCCGTGCAG
ATGAACACTGGCACCGAGGGCTCCTGGTCGATCTCCTGACGGAATCGCGC
CTCGTAGTGGTCTGGGATGAATCGTTTCATTGCGGCTTCT
BS09480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-PA | 3201 | CG32369-RA | 2328..3201 | 890..17 | 4345 | 99.8 | Minus |
| CG32369-PB | 1782 | CG32369-RB | 909..1782 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-RC | 5696 | CG32369-RC | 3458..4332 | 890..16 | 4360 | 99.9 | Minus |
| CG32369-RA | 4088 | CG32369-RA | 2597..3471 | 890..16 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7778794..7779404 | 280..890 | 3040 | 99.8 | Plus |
| 3L | 28110227 | 3L | 7778469..7778738 | 16..285 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:47:57 has no hits.
BS09480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:04 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-PB | 909..1782 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:22 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-PB | 909..1782 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:23:32 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 2597..3471 | 16..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:36 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 2597..3471 | 16..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:36 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7778469..7778736 | 16..283 | 100 | <- | Plus |
| 3L | 7778798..7779404 | 284..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:23:32 Download gff for
BS09480.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7771569..7771836 | 16..283 | 100 | <- | Plus |
| arm_3L | 7771898..7772504 | 284..890 | 99 | | Plus |
BS09480.5prime Sequence
845 bp (807 high quality bases) assembled on 2006-04-19
> BS09480.5prime
GAAGTTATCAGTCGACATGCCGAAGAATCGAACCTCGCTGAGTAGCGCAA
CGGTACCAGTTTTCCAGCAGCAGCACCGCAACTTTGCCACCTCCCGGGCA
CCGTATCCCCTACTTTGGGAGCAGGTGAGGAGGCGCAGGAAACAACAGCA
CCACCACCATCATCATCACCACCATCACCATGTGCACTTGGACGATGTGG
AGGATGAGTTCGGCCACTACAACAACTACATAATGGCTGGCGATGACATG
GAGGAGGAGGTGGAAGTGGAGGTGGAAGGCGGGGAACCGGGATCGCTGCA
CTTGGATGGCGACTTCCTGTTCCCCAGCGCCCTGGACTTTATGGATCATC
ATCGGCATCAGCGGCACGTCTTCGAGCAGAAGCAGTTCGATCTGCAGCCC
CGCCGCCATGCGAACCGAAAGCACTGCAAGCGAAAATGGTCGGTGGCCAT
GGAATCGATGGGTGGCAAGGATCTTGAGGAGGAGGATGTGGATCGGGCAC
ATGCAGCTGGCGAGAGTCAGCGGTGCAGTCGACTATTCGCTGGAGTATTG
GATCGCACGCAGCAGGAACTGCAGCGATTGAAAAAACTGGACAAATCGGC
GCCATCGCTGGCGGTGAGCTCGGTGGCCGGGCAGCTGATCGATGCCAGCG
ACTTTGACTGCGTGGTGTGCAGCCGGACTCTTTGGAAGCCGGTGGTTACC
CCGTGCGGACATACGTACTGCCTGGTATGCTTGGATCGTTGCATGGATTA
CAACTCCCCGTGTCCATTGTGCATGTCACCACTTGTGGAGTTCAATGTCA
ATGCCAGTGCCAGTACCAGTGCCAGTCAGCATCCGAATCCGAATC
BS09480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-PA | 3201 | CG32369-RA | 1420..2248 | 17..845 | 4145 | 100 | Plus |
| CG32369-PB | 1782 | CG32369-RB | 1..829 | 17..845 | 4145 | 100 | Plus |
| CG6892-PB | 1923 | Ets96B-RB | 558..585 | 154..181 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-RC | 5696 | CG32369-RC | 2550..3378 | 17..845 | 4145 | 100 | Plus |
| CG32369-RA | 4088 | CG32369-RA | 1689..2517 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7779854..7780421 | 584..17 | 2840 | 100 | Minus |
| 3L | 28110227 | 3L | 7779484..7779744 | 845..585 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:35:41 has no hits.
BS09480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:05 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-PB | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:23 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-PB | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:54 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 1689..2517 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:09 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 1689..2517 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:09 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7779484..7779744 | 585..845 | 100 | <- | Minus |
| 3L | 7779854..7780421 | 17..584 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:54 Download gff for
BS09480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7772584..7772844 | 585..845 | 100 | <- | Minus |
| arm_3L | 7772954..7773521 | 17..584 | 100 | | Minus |
BS09480.complete Sequence
1814 bp assembled on 2008-08-14
GenBank Submission: FJ636431
> BS09480.complete
GAAGTTATCAGTCGACATGCCGAAGAATCGAACCTCGCTGAGTAGCGCAA
CGGTACCAGTTTTCCAGCAGCAGCACCGCAACTTTGCCACCTCCCGGGCA
CCGTATCCCCTACTTTGGGAGCAGGTGAGGAGGCGCAGGAAACAACAGCA
CCACCACCATCATCATCACCACCATCACCATGTGCACTTGGACGATGTGG
AGGATGAGTTCGGCCACTACAACAACTACATAATGGCTGGCGATGACATG
GAGGAGGAGGTGGAAGTGGAGGTGGAAGGCGGGGAACCGGGATCGCTGCA
CTTGGATGGCGACTTCCTGTTCCCCAGCGCCCTGGACTTTATGGATCATC
ATCGGCATCAGCGGCACGTCTTCGAGCAGAAGCAGTTCGATCTGCAGCCC
CGCCGCCATGCGAACCGAAAGCACTGCAAGCGAAAATGGTCGGTGGCCAT
GGAATCGATGGGTGGCAAGGATCTTGAGGAGGAGGATGTGGATCGGGCAC
ATGCAGCTGGCGAGAGTCAGCGGTGCAGTCGACTATTCGCTGGAGTATTG
GATCGCACGCAGCAGGAACTGCAGCGATTGAAAAAACTGGACAAATCGGC
GCCATCGCTGGCGGTGAGCTCGGTGGCCGGGCAGCTGATCGATGCCAGCG
ACTTTGACTGCGTGGTGTGCAGCCGGACTCTTTGGAAGCCGGTGGTTACC
CCGTGCGGACATACGTACTGCCTGGTATGCTTGGATCGTTGCATGGATTA
CAACTCCCCGTGTCCATTGTGCATGTCACCACTTGTGGAGTTCAATGTCA
ATGCCAGTGCCAGTACCAGTGCCAGTCAGCATCCGAATCCGAATCAGAAT
CAGATCCACCTGCATCCGGGCTCATCCTCGCCAGTTCCATTTGCGCTGGC
CAAGCGGCCAGTGACAAAGTTCCTAGAAGCCGCAATGAAACGATTCATTC
CAGACCACTACGAGGCGCGATTCCGTCAGGAGATCGACCAGGAGCCCTCG
GTGCCAGTGTTCATCTGCACGGCAGCCTTTCCGGCAGTTCCGTGTCCCCT
GTTCGTGTGCGAACCCAGATACAGGCTGATGGTTCGGCGAGCCGTCGAGT
CCGGTGACAAAACCTTTGGCATTGTGCAACCGAATGGCGGAAAGTCACGC
TACTACGATGTGGGCACCATCCTGGACATCCGGGACTGCGTTCAGCTGGG
CGATGGCTGTTCCATTTTGAGTACCATCGGTTGCAAGCGGTTTAAGATCC
TGGCGCGCAACGAAAAGGATGGCTATGAAACGGCCAAGGTGGAGTACATC
TGCGACGAACCCATTGCCGATGAGCAGGTGAAGATCCTGGCCGGAATGCA
GGGCGTCGTCCTGGCCAAAGCCAGTGAATGGTTCGAAAGCCTGAGTACAG
AGCAGAAGCACGAGATTCTGCAGAGCTTTGGCCAGATGCCACCGCTGGAG
CCAAATTGGGAGCTGATCAGCGATGGACCGGCGTGGGCGTGGTGGATTAT
AGCCCTGCTGCCCCTCTCCCAGCAACTAAAGGTGGACATTTTGGCCACTA
CTTCGCTGGAGAAGCGGTTGCGTGCCATTGACAAGACACTGGACTGGCTG
CACGACCTGAGCCACCCACAACAGCCGGCGCACCACCCAATGAACCACCA
CCAGCAGGCGCCACAGTCGCCTCAGCAGGCGCATCATCTCGATCTCGACT
GCGAAGAGCAGGAGGGCGCTTCTTCCGGTTCCGATGAGTGTTGCCTCTTT
GCGGAAACCGGAAACGAGCCGCACACGGACGAGGAACTGCTCCTGTAAAA
GCTTTCTAGACCAT
BS09480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-RC | 3201 | CG32369-PC | 1420..3201 | 17..1798 | 8910 | 100 | Plus |
| CG32369-RA | 3201 | CG32369-PA | 1420..3201 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-RC | 5696 | CG32369-RC | 2550..4332 | 17..1799 | 8915 | 100 | Plus |
| CG32369-RA | 4088 | CG32369-RA | 1689..3471 | 17..1799 | 8915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7778794..7779744 | 1535..585 | 4755 | 100 | Minus |
| 3L | 28110227 | 3L | 7779854..7780421 | 584..17 | 2840 | 100 | Minus |
| 3L | 28110227 | 3L | 7778469..7778738 | 1799..1530 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:33:46 has no hits.
BS09480.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:46:06 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RB | 594..2376 | 17..1799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:54 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 1689..3468 | 17..1796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:33 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RB | 594..2373 | 17..1796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:20 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32369-RA | 1689..3468 | 17..1796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:20 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7778472..7778736 | 1532..1796 | 100 | <- | Minus |
| 3L | 7778798..7779744 | 585..1531 | 100 | <- | Minus |
| 3L | 7779854..7780421 | 17..584 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:54 Download gff for
BS09480.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7771572..7771836 | 1532..1796 | 100 | <- | Minus |
| arm_3L | 7771898..7772844 | 585..1531 | 100 | <- | Minus |
| arm_3L | 7772954..7773521 | 17..584 | 100 | | Minus |
BS09480.pep Sequence
Translation from 16 to 1797
> BS09480.pep
MPKNRTSLSSATVPVFQQQHRNFATSRAPYPLLWEQVRRRRKQQHHHHHH
HHHHHVHLDDVEDEFGHYNNYIMAGDDMEEEVEVEVEGGEPGSLHLDGDF
LFPSALDFMDHHRHQRHVFEQKQFDLQPRRHANRKHCKRKWSVAMESMGG
KDLEEEDVDRAHAAGESQRCSRLFAGVLDRTQQELQRLKKLDKSAPSLAV
SSVAGQLIDASDFDCVVCSRTLWKPVVTPCGHTYCLVCLDRCMDYNSPCP
LCMSPLVEFNVNASASTSASQHPNPNQNQIHLHPGSSSPVPFALAKRPVT
KFLEAAMKRFIPDHYEARFRQEIDQEPSVPVFICTAAFPAVPCPLFVCEP
RYRLMVRRAVESGDKTFGIVQPNGGKSRYYDVGTILDIRDCVQLGDGCSI
LSTIGCKRFKILARNEKDGYETAKVEYICDEPIADEQVKILAGMQGVVLA
KASEWFESLSTEQKHEILQSFGQMPPLEPNWELISDGPAWAWWIIALLPL
SQQLKVDILATTSLEKRLRAIDKTLDWLHDLSHPQQPAHHPMNHHQQAPQ
SPQQAHHLDLDCEEQEGASSGSDECCLFAETGNEPHTDEELLL*
BS09480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32369-PC | 1066 | CG32369-PC | 474..1066 | 1..593 | 3221 | 100 | Plus |
| CG32369-PA | 1066 | CG32369-PA | 474..1066 | 1..593 | 3221 | 100 | Plus |
