Clone Sequence Records
BS09488.3prime Sequence
910 bp (843 high quality bases) assembled on 2006-04-19
> BS09488.3prime
ATGGTCTAGAAAGCTTTCAGGAGCTGGCAGCCACCTCAGCTGTGCTGGGG
GCTGCAGATCCAGTCTCGATTGTCTCAGTCTCCATTGCCAAGTCTTCCGT
TTCGGCGGTGGCATCCATATCAGCTCCACCAGATGGCAGCTTTTGAAGCA
GGGCTCTGCGTGCAGATGGCTCTTTATCAGAGTCATCGTCGGATGATTCA
CTTTCTGAGCTATCGTTTCGCTTGTTTGCGGTATCCGAGGGTGCCTCAAG
GGATAGCCGGGGAGCCACGGGTCGCTTCTTCCTTGCCGGGTTAAGTACAT
TGCAGAAGGCACACCGGAAGGTAGTGTACTCGTACTCCTCCTTCGGCAGC
ATTCCGTTGTGGGCGTGGCACGCCTTGCAGATCATGCCGAATCGATCCTT
TGGACTGTCACCCACGATGAAGTCCACAATGCGATCGATGGCACTTCGTG
ATCGATCGTCCACGATGGGAAAAGGCGATCGCCGTCGCAATTCTTGAACG
GCGCGCAACTGCGGCGAAGCTGACGTCATCTGTCCCAGTGAATGTGTGCT
GATGACGCTGCTGTTCAGCGATGTGTTCTGGTTGTTGTTATTGTTGCGGT
AAACACTGGTGTATGGAGCCAGCGAGCGCTGCTGCTGCTGCTGTCCTCCG
GCTGATGAAGTTCGTGCGACGGCAGCGACGGTCAGTGGAGACCGCTCAAC
TTGCGGGCGGTTGGGCGTTGAGCCGGTCGGCAGACCGCTGATGCGGAGCT
GCTTCTTGTCGCCAAAACGCTCCAGGAGATTCACCGCCACCTTATAGGTC
TCTTTGTCCATGACCTGCTCCAATATCTTGCGCTTGTCCTCCTTCAGACG
AGTCAGCTTATCGCCATTTTTGTTGAGCTTGCGCTGGAAGTACCACGTAA
ACAGCCGCCG
BS09488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PA | 1164 | CG8735-RA | 271..1164 | 910..17 | 4470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 336..1229 | 910..17 | 4470 | 100 | Minus |
CG8735-RA | 1448 | CG8735-RA | 396..1289 | 910..17 | 4470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598571..8599009 | 354..792 | 2195 | 100 | Plus |
2R | 25286936 | 2R | 8598113..8598290 | 178..355 | 890 | 100 | Plus |
2R | 25286936 | 2R | 8597687..8597848 | 17..178 | 810 | 100 | Plus |
2R | 25286936 | 2R | 8599267..8599390 | 787..910 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 05:10:14 has no hits.
BS09488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:19 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 271..1164 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:42 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 271..1164 | 17..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:13:04 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 396..1293 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:53:18 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 396..1293 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:53:18 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8597683..8597847 | 13..177 | 98 | <- | Plus |
2R | 8598113..8598289 | 178..354 | 100 | <- | Plus |
2R | 8598572..8599007 | 355..790 | 100 | <- | Plus |
2R | 8599271..8599390 | 791..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:13:04 Download gff for
BS09488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4485188..4485352 | 13..177 | 98 | <- | Plus |
arm_2R | 4485618..4485794 | 178..354 | 100 | <- | Plus |
arm_2R | 4486077..4486512 | 355..790 | 100 | <- | Plus |
arm_2R | 4486776..4486895 | 791..910 | 100 | | Plus |
BS09488.5prime Sequence
909 bp (793 high quality bases) assembled on 2006-04-19
> BS09488.5prime
GAAGTTATCAGTCGACATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGGTGTGCTTCTGCAATGT
ACTTAACCC
BS09488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PA | 1164 | CG8735-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 65..958 | 16..909 | 4425 | 99.8 | Plus |
CG8735-RA | 1448 | CG8735-RA | 125..1018 | 16..909 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598571..8599009 | 843..405 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 8599472..8599702 | 273..43 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8599267..8599403 | 410..274 | 685 | 100 | Minus |
2R | 25286936 | 2R | 8598223..8598290 | 909..842 | 265 | 92.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:19:14 has no hits.
BS09488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:20 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:43 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:37 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 116..1018 | 7..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:33 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 116..1018 | 7..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:33 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8598223..8598289 | 843..909 | 97 | <- | Minus |
2R | 8598572..8599007 | 407..842 | 100 | <- | Minus |
2R | 8599271..8599403 | 274..406 | 100 | <- | Minus |
2R | 8599472..8599701 | 44..273 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:37 Download gff for
BS09488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4485728..4485794 | 843..909 | 97 | <- | Minus |
arm_2R | 4486077..4486512 | 407..842 | 100 | <- | Minus |
arm_2R | 4486776..4486908 | 274..406 | 100 | <- | Minus |
arm_2R | 4486977..4487206 | 44..273 | 100 | <- | Minus |
BS09488.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-02-16
> BS09488.complete
GAAGTTATCAGTCGACATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGTGTGCCTTCTGCAATGT
ACTTAACCCGGCAAGGAAGAAGCGACCCGTGGCTCCCCGGCTATCCCTTG
AGGCACCCTCGGATACCGCAAACAAGCGAAACGATAGCTCAGAAAGTGAA
TCATCCGACGATGACTCTGATAAAGAGCCATCTGCACGCAGAGCCCTGCT
TCAAAAGCTGCCATCTGGTGGAGCTGATATGGATGCCACCGCCGAAACGG
AAGACTTGGCAATGGAGACTGAGACAATCGAGACTGGATCTGCAGCCCCC
AGCACAGCTGAGGTGGCTGCCAGCTCCTGAAAGCTTTCTAGACCAT
BS09488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1164 | CG8735-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
CG8735-RA | 1164 | CG8735-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-RB | 1944 | CG8735-RB | 65..1229 | 16..1180 | 5825 | 100 | Plus |
CG8735-RA | 1448 | CG8735-RA | 125..1289 | 16..1180 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8598571..8599009 | 843..405 | 2195 | 100 | Minus |
2R | 25286936 | 2R | 8599472..8599702 | 273..43 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 8598113..8598290 | 1019..842 | 890 | 100 | Minus |
2R | 25286936 | 2R | 8597687..8597848 | 1180..1019 | 810 | 100 | Minus |
2R | 25286936 | 2R | 8599267..8599403 | 410..274 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:48:42 has no hits.
BS09488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:57 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:14 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 85..1262 | 7..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:52 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 126..1288 | 17..1179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:58 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 85..1262 | 7..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:22 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8735-RA | 126..1288 | 17..1179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:22 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8599271..8599403 | 274..406 | 100 | <- | Minus |
2R | 8599472..8599701 | 44..273 | 100 | <- | Minus |
2R | 8599811..8599837 | 17..43 | 100 | | Minus |
2R | 8597688..8597847 | 1020..1179 | 100 | <- | Minus |
2R | 8598113..8598289 | 843..1019 | 100 | <- | Minus |
2R | 8598572..8599007 | 407..842 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:52 Download gff for
BS09488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4485193..4485352 | 1020..1179 | 100 | <- | Minus |
arm_2R | 4485618..4485794 | 843..1019 | 100 | <- | Minus |
arm_2R | 4486077..4486512 | 407..842 | 100 | <- | Minus |
arm_2R | 4486776..4486908 | 274..406 | 100 | <- | Minus |
arm_2R | 4486977..4487206 | 44..273 | 100 | <- | Minus |
arm_2R | 4487316..4487342 | 17..43 | 100 | | Minus |
BS09488.pep Sequence
Translation from 16 to 1179
> BS09488.pep
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASS*
BS09488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8735-PB | 387 | CG8735-PB | 1..387 | 1..387 | 1984 | 100 | Plus |
CG8735-PA | 387 | CG8735-PA | 1..387 | 1..387 | 1984 | 100 | Plus |