Clone BS09488 Report

Search the DGRC for BS09488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG8735-RA
Protein status:BS09488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09488.3prime Sequence

910 bp (843 high quality bases) assembled on 2006-04-19

> BS09488.3prime
ATGGTCTAGAAAGCTTTCAGGAGCTGGCAGCCACCTCAGCTGTGCTGGGG
GCTGCAGATCCAGTCTCGATTGTCTCAGTCTCCATTGCCAAGTCTTCCGT
TTCGGCGGTGGCATCCATATCAGCTCCACCAGATGGCAGCTTTTGAAGCA
GGGCTCTGCGTGCAGATGGCTCTTTATCAGAGTCATCGTCGGATGATTCA
CTTTCTGAGCTATCGTTTCGCTTGTTTGCGGTATCCGAGGGTGCCTCAAG
GGATAGCCGGGGAGCCACGGGTCGCTTCTTCCTTGCCGGGTTAAGTACAT
TGCAGAAGGCACACCGGAAGGTAGTGTACTCGTACTCCTCCTTCGGCAGC
ATTCCGTTGTGGGCGTGGCACGCCTTGCAGATCATGCCGAATCGATCCTT
TGGACTGTCACCCACGATGAAGTCCACAATGCGATCGATGGCACTTCGTG
ATCGATCGTCCACGATGGGAAAAGGCGATCGCCGTCGCAATTCTTGAACG
GCGCGCAACTGCGGCGAAGCTGACGTCATCTGTCCCAGTGAATGTGTGCT
GATGACGCTGCTGTTCAGCGATGTGTTCTGGTTGTTGTTATTGTTGCGGT
AAACACTGGTGTATGGAGCCAGCGAGCGCTGCTGCTGCTGCTGTCCTCCG
GCTGATGAAGTTCGTGCGACGGCAGCGACGGTCAGTGGAGACCGCTCAAC
TTGCGGGCGGTTGGGCGTTGAGCCGGTCGGCAGACCGCTGATGCGGAGCT
GCTTCTTGTCGCCAAAACGCTCCAGGAGATTCACCGCCACCTTATAGGTC
TCTTTGTCCATGACCTGCTCCAATATCTTGCGCTTGTCCTCCTTCAGACG
AGTCAGCTTATCGCCATTTTTGTTGAGCTTGCGCTGGAAGTACCACGTAA
ACAGCCGCCG

BS09488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PA 1164 CG8735-RA 271..1164 910..17 4470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 336..1229 910..17 4470 100 Minus
CG8735-RA 1448 CG8735-RA 396..1289 910..17 4470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 354..792 2195 100 Plus
2R 25286936 2R 8598113..8598290 178..355 890 100 Plus
2R 25286936 2R 8597687..8597848 17..178 810 100 Plus
2R 25286936 2R 8599267..8599390 787..910 620 100 Plus
Blast to na_te.dros performed on 2015-02-01 05:10:14 has no hits.

BS09488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:19 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 271..1164 17..910 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:42 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 271..1164 17..910 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:13:04 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 396..1293 13..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:53:18 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 396..1293 13..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:53:18 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8597683..8597847 13..177 98 <- Plus
2R 8598113..8598289 178..354 100 <- Plus
2R 8598572..8599007 355..790 100 <- Plus
2R 8599271..8599390 791..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:13:04 Download gff for BS09488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4485188..4485352 13..177 98 <- Plus
arm_2R 4485618..4485794 178..354 100 <- Plus
arm_2R 4486077..4486512 355..790 100 <- Plus
arm_2R 4486776..4486895 791..910 100   Plus

BS09488.5prime Sequence

909 bp (793 high quality bases) assembled on 2006-04-19

> BS09488.5prime
GAAGTTATCAGTCGACATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGGTGTGCTTCTGCAATGT
ACTTAACCC

BS09488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PA 1164 CG8735-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 65..958 16..909 4425 99.8 Plus
CG8735-RA 1448 CG8735-RA 125..1018 16..909 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 843..405 2195 100 Minus
2R 25286936 2R 8599472..8599702 273..43 1155 100 Minus
2R 25286936 2R 8599267..8599403 410..274 685 100 Minus
2R 25286936 2R 8598223..8598290 909..842 265 92.6 Minus
Blast to na_te.dros performed on 2015-02-11 17:19:14 has no hits.

BS09488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:20 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:43 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:37 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 116..1018 7..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:33 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 116..1018 7..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:33 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8598223..8598289 843..909 97 <- Minus
2R 8598572..8599007 407..842 100 <- Minus
2R 8599271..8599403 274..406 100 <- Minus
2R 8599472..8599701 44..273 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:37 Download gff for BS09488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4485728..4485794 843..909 97 <- Minus
arm_2R 4486077..4486512 407..842 100 <- Minus
arm_2R 4486776..4486908 274..406 100 <- Minus
arm_2R 4486977..4487206 44..273 100 <- Minus

BS09488.complete Sequence

1196 bp (1196 high quality bases) assembled on 2006-02-16

> BS09488.complete
GAAGTTATCAGTCGACATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAA
AGTCCACGGAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTG
GAGAAGTACATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAA
CTTCGTGGGCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGT
GGTACTTCTACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTA
CCGCTGCTGCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTAC
GTGGTACTTCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTC
TGAAGGAGGACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACC
TATAAGGTGGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCT
CCGCATCAGCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTG
AGCGGTCTCCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGA
GGACAGCAGCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCG
CAACAATAACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCA
CACATTCACTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTT
CAAGAATTGCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACG
AAGTGCCATCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGG
ATCGATTCGGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTG
CCGAAGGAGGAGTACGAGTACACTACCTTCCGGTGTGCCTTCTGCAATGT
ACTTAACCCGGCAAGGAAGAAGCGACCCGTGGCTCCCCGGCTATCCCTTG
AGGCACCCTCGGATACCGCAAACAAGCGAAACGATAGCTCAGAAAGTGAA
TCATCCGACGATGACTCTGATAAAGAGCCATCTGCACGCAGAGCCCTGCT
TCAAAAGCTGCCATCTGGTGGAGCTGATATGGATGCCACCGCCGAAACGG
AAGACTTGGCAATGGAGACTGAGACAATCGAGACTGGATCTGCAGCCCCC
AGCACAGCTGAGGTGGCTGCCAGCTCCTGAAAGCTTTCTAGACCAT

BS09488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1164 CG8735-PB 1..1164 17..1180 5820 100 Plus
CG8735-RA 1164 CG8735-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RB 1944 CG8735-RB 65..1229 16..1180 5825 100 Plus
CG8735-RA 1448 CG8735-RA 125..1289 16..1180 5825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 843..405 2195 100 Minus
2R 25286936 2R 8599472..8599702 273..43 1155 100 Minus
2R 25286936 2R 8598113..8598290 1019..842 890 100 Minus
2R 25286936 2R 8597687..8597848 1180..1019 810 100 Minus
2R 25286936 2R 8599267..8599403 410..274 685 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:48:42 has no hits.

BS09488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:57 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:14 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 85..1262 7..1184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:52 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 126..1288 17..1179 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:58 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 85..1262 7..1184 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:22 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 126..1288 17..1179 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:22 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8599271..8599403 274..406 100 <- Minus
2R 8599472..8599701 44..273 100 <- Minus
2R 8599811..8599837 17..43 100   Minus
2R 8597688..8597847 1020..1179 100 <- Minus
2R 8598113..8598289 843..1019 100 <- Minus
2R 8598572..8599007 407..842 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:52 Download gff for BS09488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4485193..4485352 1020..1179 100 <- Minus
arm_2R 4485618..4485794 843..1019 100 <- Minus
arm_2R 4486077..4486512 407..842 100 <- Minus
arm_2R 4486776..4486908 274..406 100 <- Minus
arm_2R 4486977..4487206 44..273 100 <- Minus
arm_2R 4487316..4487342 17..43 100   Minus

BS09488.pep Sequence

Translation from 16 to 1179

> BS09488.pep
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASS*

BS09488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PB 387 CG8735-PB 1..387 1..387 1984 100 Plus
CG8735-PA 387 CG8735-PA 1..387 1..387 1984 100 Plus