Clone Sequence Records
BS09494.3prime Sequence
839 bp (749 high quality bases) assembled on 2006-04-19
> BS09494.3prime
ATGGTCTTGAAAGCTTTTAGCTGAGCTTGCCGACTTCCAGTTTCCGTTGA
ATGGCCTCCCACGAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGT
GAACACGCCTCCGATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATG
AGCTGTGTCTCTCCGCATATTTCACCATCAGTGGCGAGAGCTCGTAGCTG
AAGAATATCCCCGGCATTCCGCGCTCGCGATCTGAAAGATCTTTTCGGTA
TCGCGTGACGGAGAATTGATTCGTGTATATGGGCTCGCCGTCGCTGTTTC
CTCGCATATATAATGTGGGAACAATTTTTAAATAGTAATTGAACATTTCA
CTTTTGGTTTCAGCCACGTCGACTCGTAGTCCATCCAAGGGATGCGTCTT
GGCGAACTCTATCTTCTCGCCGAACGATAGGTGATTGATTGTGTGCGATA
GCTTCACATTGCTGAACTGAAAGTCATGGATGTGGAACTGGCGGATGGAG
AAGCTCTTGCCGGGCGCAAAGTGAAAGCTGCCGGCCATTCGATTCACTTC
CAGGTGACCCTGGATGCGACAGCCCTCCTTGAAGGCGTCCTCGTCGCTGC
GTTTGTACTTGCCCTTACATTGCTCGATCTTGTCCACGGCCACGGTCCAT
TTGCGCAGCCGGTAGGCGTCGAGAACATCCTCGCACGTGTTGCAGCAGTG
AGTAGCATTGTGCTCCGCTCCGTAACAACTGCCGCAAGTGACATTCTTAT
TGGGCGGCGAAACTGCAACGATTTCCTTGATGGGCGTCTCCTTGAGGGGC
TCGCCATTGAGATCCAGCCGGTGCTTAAAGACGTCGTGG
BS09494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 1122 | CG7011-RA | 300..1122 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 433..1255 | 839..17 | 4115 | 100 | Minus |
Prp31-RA | 1862 | CG6876-RA | 1688..1826 | 17..155 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162500..15162837 | 361..698 | 1690 | 100 | Plus |
3L | 28110227 | 3L | 15161161..15161373 | 149..361 | 1050 | 99.5 | Plus |
3L | 28110227 | 3L | 15162987..15163127 | 699..839 | 705 | 100 | Plus |
3L | 28110227 | 3L | 15160964..15161102 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:09:28 has no hits.
BS09494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:30 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 300..1122 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:56 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 300..1122 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:08:35 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 433..1264 | 9..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:23 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 433..1264 | 9..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:23 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15160955..15161099 | 9..152 | 97 | <- | Plus |
3L | 15161165..15161372 | 153..360 | 100 | <- | Plus |
3L | 15162500..15162837 | 361..698 | 100 | <- | Plus |
3L | 15162987..15163127 | 699..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:08:35 Download gff for
BS09494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15154055..15154199 | 9..152 | 97 | <- | Plus |
arm_3L | 15154265..15154472 | 153..360 | 100 | <- | Plus |
arm_3L | 15155600..15155937 | 361..698 | 100 | <- | Plus |
arm_3L | 15156087..15156227 | 699..839 | 100 | | Plus |
BS09494.5prime Sequence
907 bp (792 high quality bases) assembled on 2006-04-19
> BS09494.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAAATCATTCTCCGTCAC
GCGATAC
BS09494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 1122 | CG7011-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 134..1024 | 17..907 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162987..15163341 | 456..102 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 15162500..15162837 | 794..457 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 15161260..15161373 | 907..794 | 525 | 97.4 | Minus |
3L | 28110227 | 3L | 15163408..15163495 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:09:12 has no hits.
BS09494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:31 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:57 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:16 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 129..1024 | 8..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:11 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 129..1024 | 8..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:11 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15163408..15163500 | 8..104 | 95 | | Minus |
3L | 15161260..15161372 | 795..907 | 98 | <- | Minus |
3L | 15162500..15162837 | 457..794 | 100 | <- | Minus |
3L | 15162987..15163338 | 105..456 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:16 Download gff for
BS09494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15154360..15154472 | 795..907 | 98 | <- | Minus |
arm_3L | 15155600..15155937 | 457..794 | 100 | <- | Minus |
arm_3L | 15156087..15156438 | 105..456 | 100 | <- | Minus |
arm_3L | 15156508..15156600 | 8..104 | 95 | | Minus |
BS09494.complete Sequence
1154 bp assembled on 2009-02-12
> BS09494.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGCCGGGGATAT
TCTTCAGCTACGAGCTCTCGCCACTGATGGTGAAATATGCGGAGAGACAC
AGCTCATTTGGCCACTTCGCCACGAATTGCTGTTCCATCATCGGAGGCGT
GTTCACGGTGGCCGGCATTCTCGCCGTGCTGCTGAACAACTCGTGGGAGG
CCATTCAACGGAAACTGGAAGTCGGCAAGCTCAGCTAAAAGCTTTCAAGA
CCAT
BS09494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1122 | CG7011-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-RA | 1343 | CG7011-RA | 134..1255 | 17..1138 | 5610 | 100 | Plus |
Prp31-RA | 1862 | CG6876-RA | 1688..1826 | 1138..1000 | 695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162987..15163341 | 456..102 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 15162500..15162837 | 794..457 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 15161161..15161373 | 1006..794 | 1050 | 99.5 | Minus |
3L | 28110227 | 3L | 15160964..15161102 | 1138..1000 | 695 | 100 | Minus |
3L | 28110227 | 3L | 15163408..15163495 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:17:01 has no hits.
BS09494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:11 Download gff for
BS09494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 130..1249 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:47 Download gff for
BS09494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 134..1253 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:04 Download gff for
BS09494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7011-RA | 134..1253 | 17..1136 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:04 Download gff for
BS09494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15162987..15163338 | 105..456 | 100 | <- | Minus |
3L | 15163408..15163495 | 17..104 | 100 | | Minus |
3L | 15160966..15161099 | 1003..1136 | 100 | <- | Minus |
3L | 15161165..15161372 | 795..1002 | 100 | <- | Minus |
3L | 15162500..15162837 | 457..794 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:47 Download gff for
BS09494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15154066..15154199 | 1003..1136 | 100 | <- | Minus |
arm_3L | 15154265..15154472 | 795..1002 | 100 | <- | Minus |
arm_3L | 15155600..15155937 | 457..794 | 100 | <- | Minus |
arm_3L | 15156087..15156438 | 105..456 | 100 | <- | Minus |
arm_3L | 15156508..15156595 | 17..104 | 100 | | Minus |
BS09494.pep Sequence
Translation from 16 to 1137
> BS09494.pep
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLS*
BS09494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7011-PA | 373 | CG7011-PA | 1..373 | 1..373 | 1970 | 100 | Plus |
CG4293-PE | 439 | CG4293-PE | 19..364 | 8..356 | 210 | 23.2 | Plus |
CG4293-PD | 441 | CG4293-PD | 19..366 | 8..356 | 203 | 23.8 | Plus |
CG4293-PC | 441 | CG4293-PC | 19..366 | 8..356 | 203 | 23.8 | Plus |
CG4293-PA | 441 | CG4293-PA | 19..366 | 8..356 | 203 | 23.8 | Plus |