Clone BS09494 Report

Search the DGRC for BS09494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG7011-RA
Protein status:BS09494.pep: full length peptide match
Sequenced Size:1154

Clone Sequence Records

BS09494.3prime Sequence

839 bp (749 high quality bases) assembled on 2006-04-19

> BS09494.3prime
ATGGTCTTGAAAGCTTTTAGCTGAGCTTGCCGACTTCCAGTTTCCGTTGA
ATGGCCTCCCACGAGTTGTTCAGCAGCACGGCGAGAATGCCGGCCACCGT
GAACACGCCTCCGATGATGGAACAGCAATTCGTGGCGAAGTGGCCAAATG
AGCTGTGTCTCTCCGCATATTTCACCATCAGTGGCGAGAGCTCGTAGCTG
AAGAATATCCCCGGCATTCCGCGCTCGCGATCTGAAAGATCTTTTCGGTA
TCGCGTGACGGAGAATTGATTCGTGTATATGGGCTCGCCGTCGCTGTTTC
CTCGCATATATAATGTGGGAACAATTTTTAAATAGTAATTGAACATTTCA
CTTTTGGTTTCAGCCACGTCGACTCGTAGTCCATCCAAGGGATGCGTCTT
GGCGAACTCTATCTTCTCGCCGAACGATAGGTGATTGATTGTGTGCGATA
GCTTCACATTGCTGAACTGAAAGTCATGGATGTGGAACTGGCGGATGGAG
AAGCTCTTGCCGGGCGCAAAGTGAAAGCTGCCGGCCATTCGATTCACTTC
CAGGTGACCCTGGATGCGACAGCCCTCCTTGAAGGCGTCCTCGTCGCTGC
GTTTGTACTTGCCCTTACATTGCTCGATCTTGTCCACGGCCACGGTCCAT
TTGCGCAGCCGGTAGGCGTCGAGAACATCCTCGCACGTGTTGCAGCAGTG
AGTAGCATTGTGCTCCGCTCCGTAACAACTGCCGCAAGTGACATTCTTAT
TGGGCGGCGAAACTGCAACGATTTCCTTGATGGGCGTCTCCTTGAGGGGC
TCGCCATTGAGATCCAGCCGGTGCTTAAAGACGTCGTGG

BS09494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 1122 CG7011-RA 300..1122 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 433..1255 839..17 4115 100 Minus
Prp31-RA 1862 CG6876-RA 1688..1826 17..155 695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162500..15162837 361..698 1690 100 Plus
3L 28110227 3L 15161161..15161373 149..361 1050 99.5 Plus
3L 28110227 3L 15162987..15163127 699..839 705 100 Plus
3L 28110227 3L 15160964..15161102 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:09:28 has no hits.

BS09494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:30 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 300..1122 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:56 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 300..1122 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:08:35 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 433..1264 9..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:47:23 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 433..1264 9..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:47:23 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15160955..15161099 9..152 97 <- Plus
3L 15161165..15161372 153..360 100 <- Plus
3L 15162500..15162837 361..698 100 <- Plus
3L 15162987..15163127 699..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:08:35 Download gff for BS09494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15154055..15154199 9..152 97 <- Plus
arm_3L 15154265..15154472 153..360 100 <- Plus
arm_3L 15155600..15155937 361..698 100 <- Plus
arm_3L 15156087..15156227 699..839 100   Plus

BS09494.5prime Sequence

907 bp (792 high quality bases) assembled on 2006-04-19

> BS09494.5prime
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAAATCATTCTCCGTCAC
GCGATAC

BS09494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 1122 CG7011-RA 1..869 17..885 4345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 134..1024 17..907 4410 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162987..15163341 456..102 1775 100 Minus
3L 28110227 3L 15162500..15162837 794..457 1690 100 Minus
3L 28110227 3L 15161260..15161373 907..794 525 97.4 Minus
3L 28110227 3L 15163408..15163495 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:09:12 has no hits.

BS09494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:31 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:57 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:16 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 129..1024 8..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:06:11 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 129..1024 8..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:06:11 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15163408..15163500 8..104 95   Minus
3L 15161260..15161372 795..907 98 <- Minus
3L 15162500..15162837 457..794 100 <- Minus
3L 15162987..15163338 105..456 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:16 Download gff for BS09494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15154360..15154472 795..907 98 <- Minus
arm_3L 15155600..15155937 457..794 100 <- Minus
arm_3L 15156087..15156438 105..456 100 <- Minus
arm_3L 15156508..15156600 8..104 95   Minus

BS09494.complete Sequence

1154 bp assembled on 2009-02-12

> BS09494.complete
GAAGTTATCAGTCGACATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACG
CCTATCCCCGCACACTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCC
GCAGTTACAATTATCAGTACCAGCATCATAAGCCTACTGATCTTCCTCGA
GGTCCTCAACTACATGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACA
CCACTCGTGATCACAAGTTGAGAATAAATCTGGACGTGACACTGCATAAT
CTGGCGTGCAACTACATCTCATTGGACGCAATGGATTCATCTGGCGACAC
ACACTTGAGGGTGGACCACGACGTCTTTAAGCACCGGCTGGATCTCAATG
GCGAGCCCCTCAAGGAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCG
CCCAATAAGAATGTCACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGC
TACTCACTGCTGCAACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGC
GCAAATGGACCGTGGCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTAC
AAACGCAGCGACGAGGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCA
CCTGGAAGTGAATCGAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGA
GCTTCTCCATCCGCCAGTTCCACATCCATGACTTTCAGTTCAGCAATGTG
AAGCTATCGCACACAATCAATCACCTATCGTTCGGCGAGAAGATAGAGTT
CGCCAAGACGCATCCCTTGGATGGACTACGAGTCGACGTGGCTGAAACCA
AAAGTGAAATGTTCAATTACTATTTAAAAATTGTTCCCACATTATATATG
CGAGGAAACAGCGACGGCGAGCCCATATACACGAATCAATTCTCCGTCAC
GCGATACCGAAAAGATCTTTCAGATCGCGAGCGCGGAATGCCGGGGATAT
TCTTCAGCTACGAGCTCTCGCCACTGATGGTGAAATATGCGGAGAGACAC
AGCTCATTTGGCCACTTCGCCACGAATTGCTGTTCCATCATCGGAGGCGT
GTTCACGGTGGCCGGCATTCTCGCCGTGCTGCTGAACAACTCGTGGGAGG
CCATTCAACGGAAACTGGAAGTCGGCAAGCTCAGCTAAAAGCTTTCAAGA
CCAT

BS09494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1122 CG7011-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1343 CG7011-RA 134..1255 17..1138 5610 100 Plus
Prp31-RA 1862 CG6876-RA 1688..1826 1138..1000 695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162987..15163341 456..102 1775 100 Minus
3L 28110227 3L 15162500..15162837 794..457 1690 100 Minus
3L 28110227 3L 15161161..15161373 1006..794 1050 99.5 Minus
3L 28110227 3L 15160964..15161102 1138..1000 695 100 Minus
3L 28110227 3L 15163408..15163495 104..17 440 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:17:01 has no hits.

BS09494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:11 Download gff for BS09494.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 130..1249 17..1136 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:47 Download gff for BS09494.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 134..1253 17..1136 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:04 Download gff for BS09494.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 134..1253 17..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:04 Download gff for BS09494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15162987..15163338 105..456 100 <- Minus
3L 15163408..15163495 17..104 100   Minus
3L 15160966..15161099 1003..1136 100 <- Minus
3L 15161165..15161372 795..1002 100 <- Minus
3L 15162500..15162837 457..794 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:47 Download gff for BS09494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15154066..15154199 1003..1136 100 <- Minus
arm_3L 15154265..15154472 795..1002 100 <- Minus
arm_3L 15155600..15155937 457..794 100 <- Minus
arm_3L 15156087..15156438 105..456 100 <- Minus
arm_3L 15156508..15156595 17..104 100   Minus

BS09494.pep Sequence

Translation from 16 to 1137

> BS09494.pep
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLS*

BS09494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 373 CG7011-PA 1..373 1..373 1970 100 Plus
CG4293-PE 439 CG4293-PE 19..364 8..356 210 23.2 Plus
CG4293-PD 441 CG4293-PD 19..366 8..356 203 23.8 Plus
CG4293-PC 441 CG4293-PC 19..366 8..356 203 23.8 Plus
CG4293-PA 441 CG4293-PA 19..366 8..356 203 23.8 Plus