Clone Sequence Records
BS09495.complete Sequence
1988 bp assembled on 2009-12-07
GenBank Submission: KX801181
> BS09495.complete
GAAGTTATCAGTCGACATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGC
ATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTG
TCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCA
CAAGTTCGATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTG
GATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTA
TTTCCCACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGC
CCTCTCAAATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGG
TGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGT
CGGGAGGCGGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTT
CTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGA
CCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCA
GATCGCACGGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAA
GCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGA
TCATGTCGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGAT
GGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTTGTTGCCGCCGGCGG
TTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCG
ATGGCAATGCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAA
TTTGTGCAGTTTCATCCCACTGGCATCTACGGAGCCGGATGCCTTATCAC
CGAGGGAGTTAGGGGCGAAGGCGGTTTCTTCTTGAACTGCAAGGGAGAAC
GTTTCATGGAACGCTATGCTCCAAAGGCCAAGGATCTGGCGTCCAGAGAT
GTGGTGGCGCGGGCCATGACCATGGAGGTTCTTGCTGGCAATGGTTGTGG
TCCGCTCAAGGATCATGTGCACCTTCAGCTCCACCATATCGACGCCAAGA
TCATCAAGCAACGATTGCCGGGCATTATGGTCACCGCCCGGATTTTTGCC
AAAGTGGATGTGACCAAGGAACCAGTACCAGTGCTGCCAACTGTGCACTA
CAACATGGGCGGCATACCAACGGATTACAAGGGTCGTGTGGTCACCATCG
ATGAGAATGGCAAGGAACAGGTTGTCAAGGGACTGTACTCCTGCGGGGAA
ACTTCCTGCGCCTCAGTACACGGAGCAAATCGATTGGGTGCCAACTCCCT
GCTGGATCTGATCATCTTTGGCCGCGTCTGTGCTCTGGACATTGCCGCAA
ACAACTGTCCGGGGGATAAGCCGCCCCAGGTGGAGGACAAAGCCACGGAG
AAGTCGCTGGATAATTTTAAGCGCCTGCGCTGCGCCGACGGATGCATTCC
CACTGCGGTGTTGAGAATGGAACTTCAGCGGACCATGACCAAACATGCGG
CTGTTTTCCGGGAGGGAAAACTGCTCAAGGAGGGTCTGCTCAAAGTGGCC
GAGTTATGTGAACAGTTCAAGGACATCAAGACAACCGATCGTACGATGGT
GTGGAACTCCAACCTAGTTGAGACGCTAGAGCTGCAGAATATGCTAGCCA
ATGCGGTGCACATCATTACAGCCATGGAAAATCGCAAGGAGTCGAGGGGC
TCCCATGCTCGCGAGGATTTCAAGACGCGCGTGGATGAGCTGGACTATGG
AGCACCACTGGCCGGACAGAAAAAGAAACCATTCGAGGAGCATTGGCGCA
AGCACACCATGACCTTTGCACTGGGTAACAAAGGATGTGCATCGATCAAA
TATCGCCCGGTTGTGGACACCACCTTGGACAGCTCCGTTGCACCCATTCC
ACCTGCTCCGCGCACCTACTGAAAGCTTTCTAGACCAT
BS09495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 1956 | CG5718-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| SdhA-RA | 1986 | CG17246-PA | 177..1041 | 157..1027 | 540 | 71.1 | Plus |
| SdhA-RC | 1986 | CG17246-PC | 177..1041 | 157..1027 | 540 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 67..2023 | 17..1973 | 9785 | 100 | Plus |
| SdhA-RA | 2750 | CG17246-RA | 405..1269 | 157..1027 | 540 | 71.1 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 318..1182 | 157..1027 | 540 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11922735..11924691 | 1973..17 | 9785 | 100 | Minus |
| 2R | 25286936 | 2R | 19393460..19394324 | 1027..157 | 540 | 71.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:38 has no hits.
BS09495.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:19 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2021 | 17..1971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:07:27 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2021 | 17..1971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:25 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2021 | 17..1971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:05:15 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 67..2021 | 17..1971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:05:15 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11922737..11924691 | 17..1971 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:07:27 Download gff for
BS09495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11915837..11917791 | 17..1971 | 100 | | Minus |
BS09495.3prime Sequence
897 bp (836 high quality bases) assembled on 2006-04-19
> BS09495.3prime
ATGGTCTAGAAAGCTTTCAGTAGGTGCGCGGAGCAGGTGGAATGGGTGCA
ACGGAGCTGTCCAAGGTGGTGTCCACAACCGGGCGATATTTGATCGATGC
ACATCCTTTGTTACCCAGTGCAAAGGTCATGGTGTGCTTGCGCCAATGCT
CCTCGAATGGTTTCTTTTTCTGTCCGGCCAGTGGTGCTCCATAGTCCAGC
TCATCCACGCGCGTCTTGAAATCCTCGCGAGCATGGGAGCCCCTCGACTC
CTTGCGATTTTCCATGGCTGTAATGATGTGCACCGCATTGGCTAGCATAT
TCTGCAGCTCTAGCGTCTCAACTAGGTTGGAGTTCCACACCATCGTACGA
TCGGTTGTCTTGATGTCCTTGAACTGTTCACATAACTCGGCCACTTTGAG
CAGACCCTCCTTGAGCAGTTTTCCCTCCCGGAAAACAGCCGCATGTTTGG
TCATGGTCCGCTGAAGTTCCATTCTCAACACCGCAGTGGGAATGCATCCG
TCGGCGCAGCGCAGGCGCTTAAAATTATCCAGCGACTTCTCCGTGGCTTT
GTCCTCCACCTGGGGCGGCTTATCCCCCGGACAGTTGTTTGCGGCAATGT
CCAGAGCACAGACGCGGCCAAAGATGATCAGATCCAGCAGGGAGTTGGCA
CCCAATCGATTTGCTCCGTGTACTGAGGCGCAGGAAGTTTCCCCGCAGGA
GTACAGTCCCTTGACAACCTGTTCCTTGCCATTCTCATCGATGGTGACCA
CACGACCCTTGTAATCCGTTGGTATGCCGCCCATGTTGTAGTGCACAGTT
GGCAGCACTGGTACTGGTTCCTTGGTCACATCCACTTTGGCAAAAATCCG
GGCGGTGACCATAATGCCCGGCAATCGTTGCTTGATGATCTTGGCGT
BS09495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 1956 | CG5718-RA | 1076..1956 | 897..17 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 1142..2023 | 897..16 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11922735..11923616 | 16..897 | 4410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:34:23 has no hits.
BS09495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:32 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1076..1956 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:21:59 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1076..1956 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:47:24 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 1142..2029 | 7..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:29:19 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 1142..2029 | 7..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:29:19 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11922729..11923616 | 7..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:47:24 Download gff for
BS09495.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11915829..11916716 | 7..897 | 99 | | Plus |
BS09495.5prime Sequence
880 bp (856 high quality bases) assembled on 2006-04-19
> BS09495.5prime
GAAGTTATCAGTCGACATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGC
ATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTG
TCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCA
CAAGTTCGATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTG
GATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTA
TTTCCCACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGC
CCTCTCAAATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGG
TGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGT
CGGGAGGCGGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTT
CTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGA
CCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCA
GATCGCACGGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAA
GCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGA
TCATGTCGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGAT
GGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTTGTTGCCGCCGGCGG
TTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCG
ATGGCAATGCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAA
TTTGTGCAGTTTCATCCCACTGGCATCTAC
BS09495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 1956 | CG5718-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG17246-PC | 1986 | Scs-fp-RC | 361..392 | 341..372 | 135 | 96.8 | Plus |
| CG17246-PB | 1986 | Scs-fp-RB | 361..392 | 341..372 | 135 | 96.8 | Plus |
| CG17246-PA | 1986 | Scs-fp-RA | 361..392 | 341..372 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-RA | 2148 | CG5718-RA | 67..930 | 17..880 | 4320 | 100 | Plus |
| SdhA-RA | 2750 | CG17246-RA | 405..1122 | 157..880 | 505 | 72.6 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 318..1035 | 157..880 | 505 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11923828..11924691 | 880..17 | 4320 | 100 | Minus |
| 2R | 25286936 | 2R | 19393998..19394324 | 483..157 | 450 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:45:23 has no hits.
BS09495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:33 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:01 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:18 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..930 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:32 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5718-RA | 59..930 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:32 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11923828..11924699 | 9..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:18 Download gff for
BS09495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11916928..11917799 | 9..880 | 99 | | Minus |
BS09495.pep Sequence
Translation from 16 to 1971
> BS09495.pep
MNRLFLKRAGQHVTRSLLGPNGSRLLQVSCVRDASCKDEYSLIDHKFDAI
VIGAGGAGMRAGFGLAEKGFQTAIISKLFPTRSHTVAAQGGVNAALSNMD
KDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVCELDMYGMPFSRKPD
GKIYQRPFGGQTLDYGKGGVARRACACADRTGHALIHTLYGQTLKHSDSC
HYFVDYFVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVY
FSTTAGHTCTGDGNAWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRG
EGGFFLNCKGERFMERYAPKAKDLASRDVVARAMTMEVLAGNGCGPLKDH
VHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKEPVPVLPTVHYNMGGI
PTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLLDLII
FGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLR
MELQRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNL
VETLELQNMLANAVHIITAMENRKESRGSHAREDFKTRVDELDYGAPLAG
QKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRT
Y*
BS09495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5718-PA | 651 | CG5718-PA | 1..651 | 1..651 | 3474 | 100 | Plus |
| SdhA-PA | 661 | CG17246-PA | 39..661 | 27..651 | 2182 | 63.7 | Plus |
| SdhA-PC | 661 | CG17246-PC | 39..661 | 27..651 | 2182 | 63.7 | Plus |
| SdhA-PB | 661 | CG17246-PB | 39..661 | 27..651 | 2182 | 63.7 | Plus |
