Clone Sequence Records
BS09502.3prime Sequence
934 bp (842 high quality bases) assembled on 2006-04-19
> BS09502.3prime
ATGGTCTAGAAAGCTTTTAGCCAGCATGCACTGACCGAGCAATGTCCACG
CCGGTTATGTTCTTGACCAGCTCTGGCACTTTGTTGACGATCGACAGAAC
CTCGCCGGTCAGCTTGGCAGCACCGATATCGCCAGTTCCGCTGGACACCA
TCGTGATCTTCTTAGCCTGCGACAGTGGAGCAGCCACCTCGGCGGCAACC
TTTGGCAGTGTGTCCAGGAGCATCTCCACCATCGCAGCCTCGCGGTACTC
GCGATAGGCCTCTGCCTTCATGGCCATCTGCTCGGCCTCTGCTTTAGCCT
TGGCCGCAATGGCAAAGGCCTCAGCCTCACCACGAATCCTGATCGATTCA
GCCTCGGCCTCGGCTTCCATGACCACGCGCTGCTTGTTGGCCTCGGCCAA
TTTCTCCATGCGGAACTTCTCCGCCTCGGCCGGTCGGCGGATGGTGGCCT
CCAGCTCCCGCTCGCGGCGCATGATCTCCTGCTCCTGGACGGCAATCTCC
TGCGTGCGCTCGATCACCTTCACCTGCATCTGCTCCTCCTTGATGCGCTG
CTTGGTCTTGGCCGCTTGCAGCTCGTAGGCCATCTCGGCCTCGGCCTTTT
TGGTCTGCACTTCCACATCGTATGCTGCCTTCTTCAGCTCAAAGTCGCGC
TGGGCCTTGGCAATATCGGTATCGTTGAGGAAGCGTGCGGCCATGCGTTG
CTCCTCGGCAATAGCCTCCTTAATGTGGGCCTCCGCTCGGGCCTCAGCCT
CGCCAATGCGGGCATCGCGCTTCACCTCCGCCGTGCGAGCCATACCCAAT
GACCGCAGGTAGCCCTCCTCATCGCGCAAATCCTTGATGGTGTAGGAAAA
CACGGTTATTCCCATGTTGGGCAAATCGCTGGAGGCCACCTCCAACACCT
GCTTGCTGAACTTCTTGCGGTCCTTGTAGATCTC
BS09502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8200-PA | 1281 | Flo-RA | 364..1281 | 934..17 | 4290 | 98.6 | Minus |
| CG8200-PB | 1293 | Flo-RB | 494..1293 | 816..17 | 3775 | 98.8 | Minus |
| CG8200-PB | 1293 | Flo-RB | 364..486 | 934..812 | 540 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 598..1517 | 934..15 | 4420 | 98.7 | Minus |
| Flo1-RB | 1830 | CG8200-RB | 598..1529 | 934..15 | 4290 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567243..15567715 | 344..816 | 2305 | 99.2 | Plus |
| 2R | 25286936 | 2R | 15566803..15566969 | 35..201 | 820 | 99.4 | Plus |
| 2R | 25286936 | 2R | 15567026..15567173 | 197..344 | 695 | 98 | Plus |
| 2R | 25286936 | 2R | 15568151..15568271 | 814..934 | 560 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:40:44 has no hits.
BS09502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:39 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-PA | 364..1281 | 17..934 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:08 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8200-PA | 364..1281 | 17..934 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:29:14 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 598..1517 | 15..934 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:09 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 598..1517 | 15..934 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:09 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15566572..15566591 | 15..34 | 95 | <- | Plus |
| 2R | 15566803..15566967 | 35..199 | 99 | <- | Plus |
| 2R | 15567029..15567172 | 200..343 | 97 | <- | Plus |
| 2R | 15567243..15567713 | 344..814 | 99 | <- | Plus |
| 2R | 15568152..15568271 | 815..934 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:29:14 Download gff for
BS09502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11455657..11455776 | 815..934 | 97 | | Plus |
| arm_2R | 11454077..11454096 | 15..34 | 95 | <- | Plus |
| arm_2R | 11454308..11454472 | 35..199 | 99 | <- | Plus |
| arm_2R | 11454534..11454677 | 200..343 | 97 | <- | Plus |
| arm_2R | 11454748..11455218 | 344..814 | 99 | <- | Plus |
BS09502.5prime Sequence
832 bp (651 high quality bases) assembled on 2006-04-19
> BS09502.5prime
GAAGTTATCAGTCGACATGACTTGGGGATTTGTAACCTGCGGCCCCAACG
AGGCTTTAGTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCG
GGAGGACGAGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTC
GTTGAACACGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCC
AAGGAGTGCCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGT
CAGAACGAAGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATC
AGAGGCAGAGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGC
GTGCCATCATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAG
AAGTTCAGCAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACAT
GGGAATAACCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGG
GCTACCTGCGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGAT
GCCCGCATTGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGC
TATTGCCGAGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATA
TTGCCAAGGCCCAGCGCGACTTTGAGCTGAAGAAAGCAGCATACGATGTG
GAAGTGCAGACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGNCAGC
GGCCAAGACCAAGCAGCGCATCAAGGAGGAGCAGATGCAGGTGAAGGTGA
TCGAGCGCACGCAGGAGATTGCCGTCCAGGAG
BS09502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8200-PA | 1281 | Flo-RA | 1..816 | 17..832 | 3911 | 99.1 | Plus |
| CG8200-PB | 1293 | Flo-RB | 1..486 | 17..502 | 2405 | 99.7 | Plus |
| CG8200-PB | 1293 | Flo-RB | 494..828 | 498..832 | 1531 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 235..1050 | 17..832 | 3979 | 99.1 | Plus |
| Flo1-RB | 1830 | CG8200-RB | 235..1062 | 17..832 | 3849 | 97.7 | Plus |
| CG30466-RB | 2017 | CG30466-RB | 159..211 | 69..17 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15568151..15568507 | 500..144 | 1770 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15567381..15567715 | 832..498 | 1589 | 98.2 | Minus |
| 2R | 25286936 | 2R | 15568751..15568827 | 144..68 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 15569118..15569170 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:50 has no hits.
BS09502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:40 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:09 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8200-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:22:06 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 232..1050 | 14..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:12 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 232..1050 | 14..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:12 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15567381..15567713 | 500..832 | 98 | <- | Minus |
| 2R | 15568152..15568506 | 145..499 | 99 | <- | Minus |
| 2R | 15568751..15568826 | 69..144 | 100 | <- | Minus |
| 2R | 15569119..15569172 | 11..68 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:22:06 Download gff for
BS09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11454886..11455218 | 500..832 | 98 | <- | Minus |
| arm_2R | 11455657..11456011 | 145..499 | 99 | <- | Minus |
| arm_2R | 11456256..11456331 | 69..144 | 100 | <- | Minus |
| arm_2R | 11456624..11456677 | 11..68 | 91 | <- | Minus |
BS09502.complete Sequence
1313 bp assembled on 2008-08-15
GenBank Submission: FJ636432
> BS09502.complete
GAAGTTATCAGTCGACATGACTTGGGGATTTGTAACCTGCGGCCCCAACG
AGGCTTTAGTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCG
GGAGGACGAGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTC
GTTGAACACGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCC
AAGGAGTGCCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGT
CAGAACGAAGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATC
AGAGGCAGAGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGC
GTGCCATCATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAG
AAGTTCAGCAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACAT
GGGAATAACCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGG
GCTACCTGCGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGAT
GCCCGCATTGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGC
TATTGCCGAGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATA
TTGCCAAGGCCCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTG
GAAGTGCAGACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGCAAGC
GGCCAAGACCAAGCAGCGCATCAAGGAGGAGCAGATGCAGGTGAAGGTGA
TCGAGCGCACGCAGGAGATTGCCGTCCAGGAGCAGGAGATCATGCGCCGC
GAGCGGGAGCTGGAGGCCACCATCCGCCGACCGGCCGAGGCGGAGAAGTT
CCGCATGGAGAAATTGGCCGAGGCCAACAAGCAGCGCGTGGTCATGGAAG
CCGAGGCCGAGGCTGAATCGATCAGGATTCGTGGTGAGGCTGAGGCCTTT
GCCATTGCGGCCAAGGCTAAAGCAGAGGCCGAGCAGATGGCCATGAAGGC
AGAGGCCTATCGCGAGTACCGCGAGGCTGCGATGGTGGAGATGCTCCTGG
ACACACTGCCAAAGGTTGCCGCCGAGGTGGCTGCTCCACTGTCGCAGGCT
AAGAAGATCACGATGGTGTCCAGCGGAACTGGCGATATCGGTGCTGCCAA
GCTGACCGGCGAGGTTCTGTCGATCGTCAACAAAGTGCCAGAGCTGGTCA
AGAACATAACCGGCGTGGACATTGCTCGGTCAGTGCATGCTGGCTAAAAG
CTTTCTAGACCAT
BS09502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1281 | CG8200-PA | 1..1281 | 17..1297 | 6255 | 99.2 | Plus |
| Flo1-RB | 1293 | CG8200-PB | 1..1293 | 17..1297 | 6100 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-RA | 1818 | CG8200-RA | 235..1517 | 17..1299 | 6265 | 99.2 | Plus |
| Flo1-RB | 1830 | CG8200-RB | 235..1529 | 17..1299 | 6110 | 98.3 | Plus |
| CG30466-RB | 2017 | CG30466-RB | 159..211 | 69..17 | 265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15567243..15567715 | 970..498 | 2305 | 99.2 | Minus |
| 2R | 25286936 | 2R | 15568151..15568507 | 500..144 | 1770 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15566803..15566969 | 1279..1113 | 820 | 99.4 | Minus |
| 2R | 25286936 | 2R | 15567026..15567173 | 1117..970 | 695 | 98 | Minus |
| 2R | 25286936 | 2R | 15568751..15568827 | 144..68 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 15569118..15569170 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:31 has no hits.
BS09502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:47 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-RA | 230..1515 | 14..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:34 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-1-RA | 235..1513 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:43 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo-RA | 233..1511 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:16 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Flo1-RA | 235..1513 | 17..1295 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:16 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15566803..15566967 | 1115..1279 | 99 | <- | Minus |
| 2R | 15567029..15567172 | 971..1114 | 97 | <- | Minus |
| 2R | 15567243..15567713 | 500..970 | 99 | <- | Minus |
| 2R | 15568152..15568506 | 145..499 | 99 | <- | Minus |
| 2R | 15568751..15568826 | 69..144 | 100 | <- | Minus |
| 2R | 15569119..15569170 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:34 Download gff for
BS09502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11454308..11454472 | 1115..1279 | 99 | <- | Minus |
| arm_2R | 11454534..11454677 | 971..1114 | 97 | <- | Minus |
| arm_2R | 11454748..11455218 | 500..970 | 99 | <- | Minus |
| arm_2R | 11455657..11456011 | 145..499 | 99 | <- | Minus |
| arm_2R | 11456256..11456331 | 69..144 | 100 | <- | Minus |
| arm_2R | 11456624..11456675 | 17..68 | 100 | | Minus |
BS09502.pep Sequence
Translation from 16 to 1296
> BS09502.pep
MTWGFVTCGPNEALVVSGCCYMKPLLVPGGRAFVWPVGQQVQRISLNTMT
LQVESPCVYTSQGVPISVTGIAQVKVQGQNEDMLLTACEQFLGKSEAEIN
HIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVV
SYTIKDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQ
RMAARFLNDTDIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQ
RIKEEQMQVKVIERTQEIAVQEQEIMRRERELEATIRRPAEAEKFRMEKL
AEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKAKAEAEQMAMKAEAYRE
YREAAMVEMLLDTLPKVAAEVAAPLSQAKKITMVSSGTGDIGAAKLTGEV
LSIVNKVPELVKNITGVDIARSVHAG*
BS09502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Flo1-PA | 426 | CG8200-PA | 1..426 | 1..426 | 2099 | 100 | Plus |
| Flo1-PB | 430 | CG8200-PB | 1..430 | 1..426 | 2084 | 99.1 | Plus |
| Flo2-PB | 425 | CG32593-PB | 6..415 | 7..421 | 961 | 48.7 | Plus |
| Flo2-PF | 425 | CG32593-PF | 6..415 | 7..421 | 961 | 48.7 | Plus |
| Flo2-PL | 440 | CG32593-PL | 6..415 | 7..421 | 961 | 48.7 | Plus |
