Clone BS09503 Report

Search the DGRC for BS09503

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG5274-RA
Protein status:BS09503.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09503.3prime Sequence

919 bp (873 high quality bases) assembled on 2006-04-19

> BS09503.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGTGCGCCTCTATGACGATTTTCATC
AGCTTGTGTGGAGGTAAAGATTCCAAGAGGCACAGCAGCTGGATCTGATT
GGTGATGCAGTTGGAGCTCAGGGCGATTTGCACTGCTTGGGCGAAGCGTT
CCATGCACTTCTGATATGCGGCATCCGCTTGGGGATCGGTTTTTGATTCC
GCCAGCCGTGCGCAGTAGCTCTGCAGGGATTTCACGATCTGCATAAGATC
TTGACTGGGCAGCGCTGTCGATTCCCCACTGCTGACAAGCTGTTGCAGAG
CACGCAGGAGGGATAGATGCAAATTGCTATAGGCGGAACGGTTGGAGACC
AACGGCGCCAGGACCACCCATCGAAGCAGGCCTGCTAGGGGAGTGGTAAA
GGGCATGGCTATGGCTCCGGCGGGCAGGACCAAAGGCTGCTGCGAGGCCT
GACACAAAGTGGGATTCTCCATCATCCATTCGGTTATGGTGTCCAGCAGA
GCATCTGGCGGTGGATTCAATGTCGGCGAACGCTGCTCATTGAGGTACAG
ATCCGCCACGGCGACCATAAAGTTGGCCGCAAAGTGCGGACCCACCATGG
GCAGCTGCTTGAGTTGCTCGGGGGTTTTCCGGGAGTACGAGATAAAGTCG
CTGACTATATTTTGGGCCACTTCCAGGCTGAGTGGCGTCTTGCACCCCAC
CTGTTGCATCCATGTGCCGGCAGAGGAGAGCAGCGGGGCCACGGAGCCGG
AAACTGCTGTGCTGATCAGCCGGGACAACAACTTGGATCGCTGCGGTGTC
AAGTGGCTTCCGAAGAGCGACAGGAATATGGCGTTGCGGGTGGCATCTCT
TCCTGGTCGCGAAAAGTACTCAATCAGCGCTATGATCAGCTGGAACTCCT
GGAACAGATTCATCTGGCT

BS09503.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PB 1122 CG5274-RB 220..1122 919..17 4490 99.8 Minus
CG5274-PA 1122 CG5274-RA 220..1122 919..17 4490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 274..1176 919..17 4500 99.9 Minus
CG5274-RB 1351 CG5274-RB 251..1153 919..17 4500 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426397..20427299 17..919 4500 99.9 Plus
Blast to na_te.dros performed on 2015-02-06 16:06:38 has no hits.

BS09503.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:41 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PB 220..1122 17..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:10 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PA 220..1122 17..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:12 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 251..1155 11..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:07:46 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 251..1155 11..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:07:46 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20426395..20427299 11..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:12 Download gff for BS09503.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20419495..20420399 11..919 99   Plus

BS09503.5prime Sequence

898 bp (875 high quality bases) assembled on 2006-04-19

> BS09503.5prime
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCC

BS09503.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PB 1122 CG5274-RB 1..882 17..898 4360 99.7 Plus
CG5274-PA 1122 CG5274-RA 1..882 17..898 4360 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 55..936 17..898 4380 99.8 Plus
CG5274-RB 1351 CG5274-RB 32..913 17..898 4380 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426637..20427419 898..116 3900 99.9 Minus
3L 28110227 3L 20427471..20427570 116..17 485 99 Minus
Blast to na_te.dros performed on 2015-02-12 19:55:50 has no hits.

BS09503.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:43 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PB 1..882 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:12 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:49 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..913 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:33 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..913 17..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:33 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20426637..20427418 117..898 99 <- Minus
3L 20427471..20427570 17..116 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:49 Download gff for BS09503.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20419737..20420518 117..898 99 <- Minus
arm_3L 20420571..20420670 17..116 99   Minus

BS09503.complete Sequence

1154 bp (1154 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636433

> BS09503.complete
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAG
TCAAGATCTTATGCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGC
TGGCGGAATCAAAAACCGATCCCCAAGCGGATGCCGCATATCAGAAGTGC
ATGGAACGCTTCGCCCAAGCAGTGCAAATCGCCCTGAGCTCCAACTGCAT
CACCAATCAGATCCAGCTGCTGTGCCTCTTGGAATCTTTACCTCCACACA
AGCTGATGAAAATCGTCATAGAGGCGCACAAGAAGTAGAAGCTTTCTAGA
CCAT

BS09503.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1122 CG5274-PA 1..1122 17..1138 5580 99.8 Plus
CG5274-RB 1122 CG5274-PB 1..1122 17..1138 5580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1374 CG5274-RA 55..1176 17..1138 5580 99.8 Plus
CG5274-RB 1351 CG5274-RB 32..1153 17..1138 5580 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426397..20427419 1138..116 5100 99.9 Minus
3L 28110227 3L 20427471..20427570 116..17 485 99 Minus
Blast to na_te.dros performed on 2014-11-28 00:39:42 has no hits.

BS09503.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:11 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1122 17..1138 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:32 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 55..1178 17..1144 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:03 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..1153 17..1138 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:11 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 55..1178 17..1144 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:52 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 32..1153 17..1138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:52 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20426397..20427418 117..1138 99 <- Minus
3L 20427471..20427570 17..116 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:03 Download gff for BS09503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20419497..20420518 117..1138 99 <- Minus
arm_3L 20420571..20420670 17..116 99   Minus

BS09503.pep Sequence

Translation from 16 to 1137

> BS09503.pep
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKK*

BS09503.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PA 373 CG5274-PA 1..373 1..373 1874 100 Plus
CG5274-PB 373 CG5274-PB 1..373 1..373 1874 100 Plus