Clone Sequence Records
BS09503.3prime Sequence
919 bp (873 high quality bases) assembled on 2006-04-19
> BS09503.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGTGCGCCTCTATGACGATTTTCATC
AGCTTGTGTGGAGGTAAAGATTCCAAGAGGCACAGCAGCTGGATCTGATT
GGTGATGCAGTTGGAGCTCAGGGCGATTTGCACTGCTTGGGCGAAGCGTT
CCATGCACTTCTGATATGCGGCATCCGCTTGGGGATCGGTTTTTGATTCC
GCCAGCCGTGCGCAGTAGCTCTGCAGGGATTTCACGATCTGCATAAGATC
TTGACTGGGCAGCGCTGTCGATTCCCCACTGCTGACAAGCTGTTGCAGAG
CACGCAGGAGGGATAGATGCAAATTGCTATAGGCGGAACGGTTGGAGACC
AACGGCGCCAGGACCACCCATCGAAGCAGGCCTGCTAGGGGAGTGGTAAA
GGGCATGGCTATGGCTCCGGCGGGCAGGACCAAAGGCTGCTGCGAGGCCT
GACACAAAGTGGGATTCTCCATCATCCATTCGGTTATGGTGTCCAGCAGA
GCATCTGGCGGTGGATTCAATGTCGGCGAACGCTGCTCATTGAGGTACAG
ATCCGCCACGGCGACCATAAAGTTGGCCGCAAAGTGCGGACCCACCATGG
GCAGCTGCTTGAGTTGCTCGGGGGTTTTCCGGGAGTACGAGATAAAGTCG
CTGACTATATTTTGGGCCACTTCCAGGCTGAGTGGCGTCTTGCACCCCAC
CTGTTGCATCCATGTGCCGGCAGAGGAGAGCAGCGGGGCCACGGAGCCGG
AAACTGCTGTGCTGATCAGCCGGGACAACAACTTGGATCGCTGCGGTGTC
AAGTGGCTTCCGAAGAGCGACAGGAATATGGCGTTGCGGGTGGCATCTCT
TCCTGGTCGCGAAAAGTACTCAATCAGCGCTATGATCAGCTGGAACTCCT
GGAACAGATTCATCTGGCT
BS09503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PB | 1122 | CG5274-RB | 220..1122 | 919..17 | 4490 | 99.8 | Minus |
CG5274-PA | 1122 | CG5274-RA | 220..1122 | 919..17 | 4490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 274..1176 | 919..17 | 4500 | 99.9 | Minus |
CG5274-RB | 1351 | CG5274-RB | 251..1153 | 919..17 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426397..20427299 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:06:38 has no hits.
BS09503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:41 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PB | 220..1122 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:10 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PA | 220..1122 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:12 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 251..1155 | 11..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:07:46 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 251..1155 | 11..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:07:46 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426395..20427299 | 11..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:12 Download gff for
BS09503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20419495..20420399 | 11..919 | 99 | | Plus |
BS09503.5prime Sequence
898 bp (875 high quality bases) assembled on 2006-04-19
> BS09503.5prime
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCC
BS09503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PB | 1122 | CG5274-RB | 1..882 | 17..898 | 4360 | 99.7 | Plus |
CG5274-PA | 1122 | CG5274-RA | 1..882 | 17..898 | 4360 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 55..936 | 17..898 | 4380 | 99.8 | Plus |
CG5274-RB | 1351 | CG5274-RB | 32..913 | 17..898 | 4380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426637..20427419 | 898..116 | 3900 | 99.9 | Minus |
3L | 28110227 | 3L | 20427471..20427570 | 116..17 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:55:50 has no hits.
BS09503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:43 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:12 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:49 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..913 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:33 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..913 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:33 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426637..20427418 | 117..898 | 99 | <- | Minus |
3L | 20427471..20427570 | 17..116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:49 Download gff for
BS09503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20419737..20420518 | 117..898 | 99 | <- | Minus |
arm_3L | 20420571..20420670 | 17..116 | 99 | | Minus |
BS09503.complete Sequence
1154 bp (1154 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636433
> BS09503.complete
GAAGTTATCAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGC
TCCGGAAGGGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAG
GCACTTACGCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACAT
GGTGATGCAAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGG
ATGGCGACGTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTG
TTCCAGGAGTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACC
AGGAAGAGATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCC
ACTTGACACCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCA
GTTTCCGGCTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCA
ACAGGTGGGGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAG
TCAGCGACTTTATCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAG
CTGCCCATGGTGGGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGC
GGATCTGTACCTCAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAG
ATGCTCTGCTGGACACCATAACCGAATGGATGATGGAGAATCCCACTTTG
TGTCAGGCCTCGCAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCAT
GCCCTTTACCACTCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGC
CGTTGGTCTCCAACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTG
CGTGCTCTGCAACAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAG
TCAAGATCTTATGCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGC
TGGCGGAATCAAAAACCGATCCCCAAGCGGATGCCGCATATCAGAAGTGC
ATGGAACGCTTCGCCCAAGCAGTGCAAATCGCCCTGAGCTCCAACTGCAT
CACCAATCAGATCCAGCTGCTGTGCCTCTTGGAATCTTTACCTCCACACA
AGCTGATGAAAATCGTCATAGAGGCGCACAAGAAGTAGAAGCTTTCTAGA
CCAT
BS09503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1122 | CG5274-PA | 1..1122 | 17..1138 | 5580 | 99.8 | Plus |
CG5274-RB | 1122 | CG5274-PB | 1..1122 | 17..1138 | 5580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-RA | 1374 | CG5274-RA | 55..1176 | 17..1138 | 5580 | 99.8 | Plus |
CG5274-RB | 1351 | CG5274-RB | 32..1153 | 17..1138 | 5580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20426397..20427419 | 1138..116 | 5100 | 99.9 | Minus |
3L | 28110227 | 3L | 20427471..20427570 | 116..17 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:39:42 has no hits.
BS09503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:11 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 1..1122 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:32 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 55..1178 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:03 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..1153 | 17..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:11 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RA | 55..1178 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:52 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5274-RB | 32..1153 | 17..1138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:52 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20426397..20427418 | 117..1138 | 99 | <- | Minus |
3L | 20427471..20427570 | 17..116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:03 Download gff for
BS09503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20419497..20420518 | 117..1138 | 99 | <- | Minus |
arm_3L | 20420571..20420670 | 17..116 | 99 | | Minus |
BS09503.pep Sequence
Translation from 16 to 1137
> BS09503.pep
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKK*
BS09503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5274-PA | 373 | CG5274-PA | 1..373 | 1..373 | 1874 | 100 | Plus |
CG5274-PB | 373 | CG5274-PB | 1..373 | 1..373 | 1874 | 100 | Plus |