Clone Sequence Records
BS09505.3prime Sequence
935 bp (849 high quality bases) assembled on 2006-04-19
> BS09505.3prime
ATGGTCTAGAAAGCTTTTAGCTAAAGTCGCGATTGGTAAGAACAATGGGC
GCTGCAAGGCTCCAGCCATAGATGAAGACACCCAGCCAACTGGAGACGAT
CTTGACCCACATGGAAGCCTCGTTGCCGTTGAACAGCTCGATTTCCGAAT
GAGGTTTGTACCAGTTGGTCAGGGTCATCATGACATAGAGCGAGGCGCAG
ACGAAGACCAAGTGGAACATGGACCAGGAGTAGGTGACGCCTTCGGTCTC
GGTGTCGGTGCTCGGCTTTCCGCTGCCATCCGTGCCCGCCTCTGTGTCTG
ATAGAGCTTCTGTTAAAACACGCTTCTCGCTATTATCGTGCGAGATCTTG
GATACCTCCACCGCCGAGCTAATGCAATTGTACAGGATGCACAGCAACCA
GACGACCAGTCCGATGATGTTGGTCGTATCGAAGGTGACCCTGGTGGTGT
GGGTGGGCGGTGCTGCCGTGGTGGTTGCATTGCCGAATCCCTCCATCATG
CCAAACATGCCTGGATTGCATTCTTTCTCAGGATTGTTGGCCACTGCCGA
CCAGGTTAGATACACCGTGTACAAGGTAACCAGGGAGCTCTGCAGTAGGC
CAGAATGGGGCAAGCGTTCCTGCACAGCTGGCAGAATCGAAATGACGCTA
ATCGCCAGACAGAATATGAGATTGATGGAGATGAAGAACTTGTTGATGCC
GCAGCCAGTACTGGTGGTGAAGTAGATATAAAGCAAGGTAATTCCAGTCA
GCGATAAGATATAGCACAAAAGAGTGACCCCAGCGAGGGCATAGTAGTAT
CCACGACTGTTTTCGGCGCTTTCTATCCAGTTTTCAGCCAGCGAGTGAGC
GAAATCCACAATGATGACCAGCTGGACGAGTATGAAGGCCAGGCCACCAA
TTAGACCCACCACATCATGGCCGGACCAAAGGATC
BS09505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4672-PA | 1398 | TMS1-RA | 504..1398 | 911..17 | 4475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TMS1-RA | 1748 | CG4672-RA | 602..1521 | 935..17 | 4575 | 99.9 | Minus |
TMS1-RB | 1739 | CG4672-RB | 602..1512 | 935..17 | 4430 | 98.9 | Minus |
TMS1-RD | 1736 | CG4672-RD | 602..1509 | 935..17 | 4385 | 98.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16414283..16414493 | 529..319 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 16414038..16414221 | 712..529 | 920 | 100 | Minus |
3L | 28110227 | 3L | 16414793..16414956 | 319..156 | 820 | 100 | Minus |
3L | 28110227 | 3L | 16415017..16415159 | 159..17 | 700 | 99.3 | Minus |
3L | 28110227 | 3L | 16413867..16413978 | 824..713 | 560 | 100 | Minus |
3L | 28110227 | 3L | 16413690..16413803 | 935..823 | 520 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:22:19 has no hits.
BS09505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:46 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-PA | 479..1398 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:16 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4672-PA | 479..1398 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:03 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 602..1531 | 6..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:18 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 602..1531 | 6..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:18 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16413690..16413803 | 823..935 | 99 | -> | Minus |
3L | 16413869..16413978 | 713..822 | 100 | -> | Minus |
3L | 16414038..16414221 | 529..712 | 100 | -> | Minus |
3L | 16414284..16414493 | 319..528 | 100 | -> | Minus |
3L | 16414794..16414956 | 156..318 | 100 | -> | Minus |
3L | 16415021..16415169 | 6..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:03 Download gff for
BS09505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16406790..16406903 | 823..935 | 99 | -> | Minus |
arm_3L | 16406969..16407078 | 713..822 | 100 | -> | Minus |
arm_3L | 16407138..16407321 | 529..712 | 100 | -> | Minus |
arm_3L | 16407384..16407593 | 319..528 | 100 | -> | Minus |
arm_3L | 16407894..16408056 | 156..318 | 100 | -> | Minus |
arm_3L | 16408121..16408269 | 6..155 | 97 | | Minus |
BS09505.5prime Sequence
956 bp (838 high quality bases) assembled on 2006-04-19
> BS09505.5prime
GAAGTTATCAGTCGACATGGGAGCTGCTTTGGGCATCTGTTCAGCCGCTC
AGTGCGCCATGTGCTGTGGAGGCACTGCAGCCAGCATGTGCTGCTCCGCC
TGCCCGAGCTGCACCAACGCCTCCTCATCGCGCTTCATGTACGCCTTCAT
CCTCCTGGTGGGCACCGTACTGGGGGCGATTGCGCTGTCCCCTGGACTGC
AGGACACCCTGAAGAAGATGCCCTTCTGCATCAACTCCACCTCGTCGTAT
AGCTCGGGAGCACTCAGCGCTGTCTCGGGAGGATCTCTGCAAGTCGACTG
CGAGTATGCACTTGGTTACATGGCAGTATATAGGGTTTGCTTTGGCATGG
CCTGCTTTTTCGCTCTGATGTCACTGATTATGCTGGGTGTGAAGAGCTCC
AGGGATCCGCGTTCGCACATCCAGAACAACTTTTGGCCACTGAAATTTCT
GATCTGCTTTGGCGCTGCGATTGGAGCCATCTTTATTCCGGATGGATCCT
TTGGTCCGGCCATGATGTGGGTGGGTCTAATTGGTGGCCTGGCCTTCATA
CTCGTCCAGCTGGTCATCATTGTGGATTTCGCTCACTCGCTGGCTGAAAA
CTGGATAGAAAGCGCCGAAAACAGTCGTGGATACTACTATGCCCTCGCTG
GGGTCACTCTTTTGTGCTATATCTTATCGCTGACTGGAATTACCTTGCTT
TATATCTACTTCACCACCAGTACTGGCTGCGGCATCAACAAGTTCTTCAT
CTCCATCAATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGC
CAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTG
GTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCC
CTGAGAAAGATGCAATCCAGGCATGTTTGGCATGATGGAGGGATTCGGCA
ATGCAA
BS09505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4672-PA | 1398 | TMS1-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
CG4672-PA | 1398 | TMS1-RA | 894..940 | 910..956 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TMS1-RE | 1721 | CG4672-RE | 124..1063 | 17..956 | 4655 | 99.8 | Plus |
TMS1-RD | 1736 | CG4672-RD | 124..1063 | 17..956 | 4655 | 99.8 | Plus |
TMS1-RC | 1727 | CG4672-RC | 124..1063 | 17..956 | 4655 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16413245..16413803 | 50..608 | 2795 | 100 | Plus |
3L | 28110227 | 3L | 16414038..16414219 | 719..900 | 910 | 100 | Plus |
3L | 28110227 | 3L | 16413867..16413978 | 607..718 | 560 | 100 | Plus |
3L | 28110227 | 3L | 16414291..16414337 | 910..956 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:50:37 has no hits.
BS09505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:47 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:18 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4672-PA | 1..938 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:42 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RC | 124..1061 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:34 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RC | 124..1061 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:34 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16412845..16412880 | 17..52 | 100 | -> | Plus |
3L | 16413248..16413803 | 53..608 | 100 | -> | Plus |
3L | 16413869..16413978 | 609..718 | 100 | -> | Plus |
3L | 16414038..16414221 | 719..903 | 99 | -> | Plus |
3L | 16414284..16414335 | 904..954 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:42 Download gff for
BS09505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16406969..16407078 | 609..718 | 100 | -> | Plus |
arm_3L | 16405945..16405980 | 17..52 | 100 | -> | Plus |
arm_3L | 16407138..16407321 | 719..903 | 99 | -> | Plus |
arm_3L | 16407384..16407435 | 904..954 | 98 | | Plus |
arm_3L | 16406348..16406903 | 53..608 | 100 | -> | Plus |
BS09505.complete Sequence
1430 bp (1430 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636434
> BS09505.complete
GAAGTTATCAGTCGACATGGGAGCTGCTTTGGGCATCTGTTCAGCCGCTC
AGTGCGCCATGTGCTGTGGAGGCACTGCAGCCAGCATGTGCTGCTCCGCC
TGCCCGAGCTGCACCAACGCCTCCTCATCGCGCTTCATGTACGCCTTCAT
CCTCCTGGTGGGCACCGTACTGGGGGCGATTGCGCTGTCCCCTGGACTGC
AGGACACCCTGAAGAAGATGCCCTTCTGCATCAACTCCACCTCGTCGTAT
AGCTCGGGAGCACTCAGCGCTGTCTCGGGAGGATCTCTGCAAGTCGACTG
CGAGTATGCACTTGGTTACATGGCAGTATATAGGGTTTGCTTTGGCATGG
CCTGCTTTTTCGCTCTGATGTCACTGATTATGCTGGGTGTGAAGAGCTCC
AGGGATCCGCGTTCGCACATCCAGAACAACTTTTGGCCACTGAAATTTCT
GATCTGCTTTGGCGCTGCGATTGGAGCCATCTTTATTCCGGATGGATCCT
TTGGTCCGGCCATGATGTGGGTGGGTCTAATTGGTGGCCTGGCCTTCATA
CTCGTCCAGCTGGTCATCATTGTGGATTTCGCTCACTCGCTGGCTGAAAA
CTGGATAGAAAGCGCCGAAAACAGTCGTGGATACTACTATGCCCTCGCTG
GGGTCACTCTTTTGTGCTATATCTTATCGCTGACTGGAATTACCTTGCTT
TATATCTACTTCACCACCAGTACTGGCTGCGGCATCAACAAGTTCTTCAT
CTCCATCAATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGC
CAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTG
GTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCC
TGAGAAAGAATGCAATCCAGGCATGTTTGGCATGATGGAGGGATTCGGCA
ATGCAACCACCACGGCAGCACCGCCCACCCACACCACCAGGGTCACCTTC
GATACGACCAACATCATCGGACTGGTCGTCTGGTTGCTGTGCATCCTGTA
CAATTGCATTAGCTCGGCGGTGGAGGTATCCAAGATCTCGCACGATAATA
GCGAGAAGCGTGTTTTAACAGAAGCTCTATCAGACACAGAGGCGGGCACG
GATGGCAGCGGAAAGCCGAGCACCGACACCGAGACCGAAGGCGTCACCTA
CTCCTGGTCCATGTTCCACTTGGTCTTCGTCTGCGCCTCGCTCTATGTCA
TGATGACCCTGACCAACTGGTACAAACCTCATTCGGAAATCGAGCTGTTC
AACGGCAACGAGGCTTCCATGTGGGTCAAGATCGTCTCCAGTTGGCTGGG
TGTCTTCATCTATGGCTGGAGCCTTGCAGCGCCCATTGTTCTTACCAATC
GCGACTTTAGCTAAAAGCTTTCTAGACCAT
BS09505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TMS1-RA | 1398 | CG4672-PA | 1..1398 | 17..1414 | 6990 | 100 | Plus |
TMS1-RB | 1389 | CG4672-PB | 1..1389 | 17..1414 | 6820 | 99.4 | Plus |
TMS1-RD | 1386 | CG4672-PD | 1..1386 | 17..1414 | 6775 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TMS1-RA | 1748 | CG4672-RA | 124..1521 | 17..1414 | 6990 | 100 | Plus |
TMS1-RB | 1739 | CG4672-RB | 124..1512 | 17..1414 | 6820 | 99.4 | Plus |
TMS1-RD | 1736 | CG4672-RD | 124..1509 | 17..1414 | 6775 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16413245..16413803 | 50..608 | 2795 | 100 | Plus |
3L | 28110227 | 3L | 16414283..16414493 | 902..1112 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 16414038..16414221 | 719..902 | 920 | 100 | Plus |
3L | 28110227 | 3L | 16414793..16414956 | 1112..1275 | 820 | 100 | Plus |
3L | 28110227 | 3L | 16415017..16415159 | 1272..1414 | 700 | 99.3 | Plus |
3L | 28110227 | 3L | 16413867..16413978 | 607..718 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:59:15 has no hits.
BS09505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:14 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:34 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 91..1498 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:53 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 124..1519 | 17..1412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:14 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 91..1498 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:43 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TMS1-RA | 124..1519 | 17..1412 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:43 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16414038..16414221 | 719..902 | 100 | -> | Plus |
3L | 16414284..16414493 | 903..1112 | 100 | -> | Plus |
3L | 16414794..16414956 | 1113..1275 | 100 | -> | Plus |
3L | 16415021..16415157 | 1276..1412 | 100 | | Plus |
3L | 16412845..16412880 | 17..52 | 100 | -> | Plus |
3L | 16413248..16413803 | 53..608 | 100 | -> | Plus |
3L | 16413869..16413978 | 609..718 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:53 Download gff for
BS09505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16405945..16405980 | 17..52 | 100 | -> | Plus |
arm_3L | 16406348..16406903 | 53..608 | 100 | -> | Plus |
arm_3L | 16406969..16407078 | 609..718 | 100 | -> | Plus |
arm_3L | 16407138..16407321 | 719..902 | 100 | -> | Plus |
arm_3L | 16407384..16407593 | 903..1112 | 100 | -> | Plus |
arm_3L | 16407894..16408056 | 1113..1275 | 100 | -> | Plus |
arm_3L | 16408121..16408257 | 1276..1412 | 100 | | Plus |
BS09505.pep Sequence
Translation from 16 to 1413
> BS09505.pep
MGAALGICSAAQCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGT
VLGAIALSPGLQDTLKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALG
YMAVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGA
AIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAENWIESA
ENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLI
FCLAISVISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECN
PGMFGMMEGFGNATTTAAPPTHTTRVTFDTTNIIGLVVWLLCILYNCISS
AVEVSKISHDNSEKRVLTEALSDTEAGTDGSGKPSTDTETEGVTYSWSMF
HLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGVFIYG
WSLAAPIVLTNRDFS*
BS09505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TMS1-PA | 465 | CG4672-PA | 1..465 | 1..465 | 2441 | 100 | Plus |
TMS1-PB | 462 | CG4672-PB | 1..462 | 1..465 | 2414 | 99.4 | Plus |
TMS1-PD | 461 | CG4672-PD | 1..461 | 1..465 | 2408 | 99.1 | Plus |
TMS1-PC | 458 | CG4672-PC | 1..458 | 1..465 | 2393 | 98.5 | Plus |
TMS1-PE | 456 | CG4672-PE | 1..456 | 1..465 | 2380 | 98.1 | Plus |