Clone BS09505 Report

Search the DGRC for BS09505

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptTMS1-RA
Protein status:BS09505.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09505.3prime Sequence

935 bp (849 high quality bases) assembled on 2006-04-19

> BS09505.3prime
ATGGTCTAGAAAGCTTTTAGCTAAAGTCGCGATTGGTAAGAACAATGGGC
GCTGCAAGGCTCCAGCCATAGATGAAGACACCCAGCCAACTGGAGACGAT
CTTGACCCACATGGAAGCCTCGTTGCCGTTGAACAGCTCGATTTCCGAAT
GAGGTTTGTACCAGTTGGTCAGGGTCATCATGACATAGAGCGAGGCGCAG
ACGAAGACCAAGTGGAACATGGACCAGGAGTAGGTGACGCCTTCGGTCTC
GGTGTCGGTGCTCGGCTTTCCGCTGCCATCCGTGCCCGCCTCTGTGTCTG
ATAGAGCTTCTGTTAAAACACGCTTCTCGCTATTATCGTGCGAGATCTTG
GATACCTCCACCGCCGAGCTAATGCAATTGTACAGGATGCACAGCAACCA
GACGACCAGTCCGATGATGTTGGTCGTATCGAAGGTGACCCTGGTGGTGT
GGGTGGGCGGTGCTGCCGTGGTGGTTGCATTGCCGAATCCCTCCATCATG
CCAAACATGCCTGGATTGCATTCTTTCTCAGGATTGTTGGCCACTGCCGA
CCAGGTTAGATACACCGTGTACAAGGTAACCAGGGAGCTCTGCAGTAGGC
CAGAATGGGGCAAGCGTTCCTGCACAGCTGGCAGAATCGAAATGACGCTA
ATCGCCAGACAGAATATGAGATTGATGGAGATGAAGAACTTGTTGATGCC
GCAGCCAGTACTGGTGGTGAAGTAGATATAAAGCAAGGTAATTCCAGTCA
GCGATAAGATATAGCACAAAAGAGTGACCCCAGCGAGGGCATAGTAGTAT
CCACGACTGTTTTCGGCGCTTTCTATCCAGTTTTCAGCCAGCGAGTGAGC
GAAATCCACAATGATGACCAGCTGGACGAGTATGAAGGCCAGGCCACCAA
TTAGACCCACCACATCATGGCCGGACCAAAGGATC

BS09505.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4672-PA 1398 TMS1-RA 504..1398 911..17 4475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-RA 1748 CG4672-RA 602..1521 935..17 4575 99.9 Minus
TMS1-RB 1739 CG4672-RB 602..1512 935..17 4430 98.9 Minus
TMS1-RD 1736 CG4672-RD 602..1509 935..17 4385 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16414283..16414493 529..319 1055 100 Minus
3L 28110227 3L 16414038..16414221 712..529 920 100 Minus
3L 28110227 3L 16414793..16414956 319..156 820 100 Minus
3L 28110227 3L 16415017..16415159 159..17 700 99.3 Minus
3L 28110227 3L 16413867..16413978 824..713 560 100 Minus
3L 28110227 3L 16413690..16413803 935..823 520 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:22:19 has no hits.

BS09505.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:46 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-PA 479..1398 17..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:16 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4672-PA 479..1398 17..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:03 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 602..1531 6..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:18 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 602..1531 6..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:18 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16413690..16413803 823..935 99 -> Minus
3L 16413869..16413978 713..822 100 -> Minus
3L 16414038..16414221 529..712 100 -> Minus
3L 16414284..16414493 319..528 100 -> Minus
3L 16414794..16414956 156..318 100 -> Minus
3L 16415021..16415169 6..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:03 Download gff for BS09505.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16406790..16406903 823..935 99 -> Minus
arm_3L 16406969..16407078 713..822 100 -> Minus
arm_3L 16407138..16407321 529..712 100 -> Minus
arm_3L 16407384..16407593 319..528 100 -> Minus
arm_3L 16407894..16408056 156..318 100 -> Minus
arm_3L 16408121..16408269 6..155 97   Minus

BS09505.5prime Sequence

956 bp (838 high quality bases) assembled on 2006-04-19

> BS09505.5prime
GAAGTTATCAGTCGACATGGGAGCTGCTTTGGGCATCTGTTCAGCCGCTC
AGTGCGCCATGTGCTGTGGAGGCACTGCAGCCAGCATGTGCTGCTCCGCC
TGCCCGAGCTGCACCAACGCCTCCTCATCGCGCTTCATGTACGCCTTCAT
CCTCCTGGTGGGCACCGTACTGGGGGCGATTGCGCTGTCCCCTGGACTGC
AGGACACCCTGAAGAAGATGCCCTTCTGCATCAACTCCACCTCGTCGTAT
AGCTCGGGAGCACTCAGCGCTGTCTCGGGAGGATCTCTGCAAGTCGACTG
CGAGTATGCACTTGGTTACATGGCAGTATATAGGGTTTGCTTTGGCATGG
CCTGCTTTTTCGCTCTGATGTCACTGATTATGCTGGGTGTGAAGAGCTCC
AGGGATCCGCGTTCGCACATCCAGAACAACTTTTGGCCACTGAAATTTCT
GATCTGCTTTGGCGCTGCGATTGGAGCCATCTTTATTCCGGATGGATCCT
TTGGTCCGGCCATGATGTGGGTGGGTCTAATTGGTGGCCTGGCCTTCATA
CTCGTCCAGCTGGTCATCATTGTGGATTTCGCTCACTCGCTGGCTGAAAA
CTGGATAGAAAGCGCCGAAAACAGTCGTGGATACTACTATGCCCTCGCTG
GGGTCACTCTTTTGTGCTATATCTTATCGCTGACTGGAATTACCTTGCTT
TATATCTACTTCACCACCAGTACTGGCTGCGGCATCAACAAGTTCTTCAT
CTCCATCAATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGC
CAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTG
GTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCC
CTGAGAAAGATGCAATCCAGGCATGTTTGGCATGATGGAGGGATTCGGCA
ATGCAA

BS09505.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4672-PA 1398 TMS1-RA 1..884 17..900 4420 100 Plus
CG4672-PA 1398 TMS1-RA 894..940 910..956 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-RE 1721 CG4672-RE 124..1063 17..956 4655 99.8 Plus
TMS1-RD 1736 CG4672-RD 124..1063 17..956 4655 99.8 Plus
TMS1-RC 1727 CG4672-RC 124..1063 17..956 4655 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16413245..16413803 50..608 2795 100 Plus
3L 28110227 3L 16414038..16414219 719..900 910 100 Plus
3L 28110227 3L 16413867..16413978 607..718 560 100 Plus
3L 28110227 3L 16414291..16414337 910..956 235 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:50:37 has no hits.

BS09505.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:47 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:18 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4672-PA 1..938 17..954 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:42:42 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-RC 124..1061 17..954 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:37:34 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
TMS1-RC 124..1061 17..954 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:37:34 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16412845..16412880 17..52 100 -> Plus
3L 16413248..16413803 53..608 100 -> Plus
3L 16413869..16413978 609..718 100 -> Plus
3L 16414038..16414221 719..903 99 -> Plus
3L 16414284..16414335 904..954 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:42:42 Download gff for BS09505.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16406969..16407078 609..718 100 -> Plus
arm_3L 16405945..16405980 17..52 100 -> Plus
arm_3L 16407138..16407321 719..903 99 -> Plus
arm_3L 16407384..16407435 904..954 98   Plus
arm_3L 16406348..16406903 53..608 100 -> Plus

BS09505.complete Sequence

1430 bp (1430 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636434

> BS09505.complete
GAAGTTATCAGTCGACATGGGAGCTGCTTTGGGCATCTGTTCAGCCGCTC
AGTGCGCCATGTGCTGTGGAGGCACTGCAGCCAGCATGTGCTGCTCCGCC
TGCCCGAGCTGCACCAACGCCTCCTCATCGCGCTTCATGTACGCCTTCAT
CCTCCTGGTGGGCACCGTACTGGGGGCGATTGCGCTGTCCCCTGGACTGC
AGGACACCCTGAAGAAGATGCCCTTCTGCATCAACTCCACCTCGTCGTAT
AGCTCGGGAGCACTCAGCGCTGTCTCGGGAGGATCTCTGCAAGTCGACTG
CGAGTATGCACTTGGTTACATGGCAGTATATAGGGTTTGCTTTGGCATGG
CCTGCTTTTTCGCTCTGATGTCACTGATTATGCTGGGTGTGAAGAGCTCC
AGGGATCCGCGTTCGCACATCCAGAACAACTTTTGGCCACTGAAATTTCT
GATCTGCTTTGGCGCTGCGATTGGAGCCATCTTTATTCCGGATGGATCCT
TTGGTCCGGCCATGATGTGGGTGGGTCTAATTGGTGGCCTGGCCTTCATA
CTCGTCCAGCTGGTCATCATTGTGGATTTCGCTCACTCGCTGGCTGAAAA
CTGGATAGAAAGCGCCGAAAACAGTCGTGGATACTACTATGCCCTCGCTG
GGGTCACTCTTTTGTGCTATATCTTATCGCTGACTGGAATTACCTTGCTT
TATATCTACTTCACCACCAGTACTGGCTGCGGCATCAACAAGTTCTTCAT
CTCCATCAATCTCATATTCTGTCTGGCGATTAGCGTCATTTCGATTCTGC
CAGCTGTGCAGGAACGCTTGCCCCATTCTGGCCTACTGCAGAGCTCCCTG
GTTACCTTGTACACGGTGTATCTAACCTGGTCGGCAGTGGCCAACAATCC
TGAGAAAGAATGCAATCCAGGCATGTTTGGCATGATGGAGGGATTCGGCA
ATGCAACCACCACGGCAGCACCGCCCACCCACACCACCAGGGTCACCTTC
GATACGACCAACATCATCGGACTGGTCGTCTGGTTGCTGTGCATCCTGTA
CAATTGCATTAGCTCGGCGGTGGAGGTATCCAAGATCTCGCACGATAATA
GCGAGAAGCGTGTTTTAACAGAAGCTCTATCAGACACAGAGGCGGGCACG
GATGGCAGCGGAAAGCCGAGCACCGACACCGAGACCGAAGGCGTCACCTA
CTCCTGGTCCATGTTCCACTTGGTCTTCGTCTGCGCCTCGCTCTATGTCA
TGATGACCCTGACCAACTGGTACAAACCTCATTCGGAAATCGAGCTGTTC
AACGGCAACGAGGCTTCCATGTGGGTCAAGATCGTCTCCAGTTGGCTGGG
TGTCTTCATCTATGGCTGGAGCCTTGCAGCGCCCATTGTTCTTACCAATC
GCGACTTTAGCTAAAAGCTTTCTAGACCAT

BS09505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-RA 1398 CG4672-PA 1..1398 17..1414 6990 100 Plus
TMS1-RB 1389 CG4672-PB 1..1389 17..1414 6820 99.4 Plus
TMS1-RD 1386 CG4672-PD 1..1386 17..1414 6775 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-RA 1748 CG4672-RA 124..1521 17..1414 6990 100 Plus
TMS1-RB 1739 CG4672-RB 124..1512 17..1414 6820 99.4 Plus
TMS1-RD 1736 CG4672-RD 124..1509 17..1414 6775 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16413245..16413803 50..608 2795 100 Plus
3L 28110227 3L 16414283..16414493 902..1112 1055 100 Plus
3L 28110227 3L 16414038..16414221 719..902 920 100 Plus
3L 28110227 3L 16414793..16414956 1112..1275 820 100 Plus
3L 28110227 3L 16415017..16415159 1272..1414 700 99.3 Plus
3L 28110227 3L 16413867..16413978 607..718 560 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:59:15 has no hits.

BS09505.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:14 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:34 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 91..1498 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:53 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 124..1519 17..1412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:14 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 91..1498 17..1425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:43 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
TMS1-RA 124..1519 17..1412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:43 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16414038..16414221 719..902 100 -> Plus
3L 16414284..16414493 903..1112 100 -> Plus
3L 16414794..16414956 1113..1275 100 -> Plus
3L 16415021..16415157 1276..1412 100   Plus
3L 16412845..16412880 17..52 100 -> Plus
3L 16413248..16413803 53..608 100 -> Plus
3L 16413869..16413978 609..718 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:53 Download gff for BS09505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16405945..16405980 17..52 100 -> Plus
arm_3L 16406348..16406903 53..608 100 -> Plus
arm_3L 16406969..16407078 609..718 100 -> Plus
arm_3L 16407138..16407321 719..902 100 -> Plus
arm_3L 16407384..16407593 903..1112 100 -> Plus
arm_3L 16407894..16408056 1113..1275 100 -> Plus
arm_3L 16408121..16408257 1276..1412 100   Plus

BS09505.pep Sequence

Translation from 16 to 1413

> BS09505.pep
MGAALGICSAAQCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGT
VLGAIALSPGLQDTLKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALG
YMAVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGA
AIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAENWIESA
ENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLI
FCLAISVISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECN
PGMFGMMEGFGNATTTAAPPTHTTRVTFDTTNIIGLVVWLLCILYNCISS
AVEVSKISHDNSEKRVLTEALSDTEAGTDGSGKPSTDTETEGVTYSWSMF
HLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGVFIYG
WSLAAPIVLTNRDFS*

BS09505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
TMS1-PA 465 CG4672-PA 1..465 1..465 2441 100 Plus
TMS1-PB 462 CG4672-PB 1..462 1..465 2414 99.4 Plus
TMS1-PD 461 CG4672-PD 1..461 1..465 2408 99.1 Plus
TMS1-PC 458 CG4672-PC 1..458 1..465 2393 98.5 Plus
TMS1-PE 456 CG4672-PE 1..456 1..465 2380 98.1 Plus