Clone BS09511 Report

Search the DGRC for BS09511

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmtTFB2-RA
Protein status:BS09511.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09511.3prime Sequence

880 bp (854 high quality bases) assembled on 2006-04-19

> BS09511.3prime
ATGGTCTAGAAAGCTTCTAAGAACTGGCTTTCCTGCGCCTCTTGACGGGA
GTGGTGGCGGGTACAGGGCTTTCTTCTTCGATAATTTCATCTGCTTCGGC
ATCATCCTCTTCTGGCAACGTGACGCCATCCTCTAGGTTTGGTTCGTCAT
TGGCAGTCTCCAGCTTGAGCAGCGCATTTTCCAGCGAGGCGAGGAAAGAG
CTCTCGCCGTACTCCGGCCACTGACGAAACTGACTAAATAGCGTCAGAAT
CTGACTGGGCAGGAGATCTCCGAACTGTGTGTAGATGTTGATGCCGGGAT
AGTAGTTTCTGGTGCTCATTGTAGTACTCTGGCACGAGTACTGTGGTAGT
TTCTTGGGCAATTCATCTGGATAGATGGGTGTTACGGACTCGGAGGACTT
CGGATTAATGATAAGCCGAGGTCCACAGCCGGGAACCCACTTTTCTAAAT
TGGGTATTATTCTGTTTCGTCGGCTTACATAGTTCTGCTTAATGAAGAAC
CAGAGAGCGGGTAGATCCTGCGACTGGCACAGCTCATGAAGATTGCGGCG
CGGAGTGAATTTCACCAAGTACAAGTACTCGGGATTGATGGACTGCACCT
TACCCAACTTGCTACTCTTGGTGGGGCTATAGGCCATCTGCTGAGGTAGA
AAATCCTCGCGCGGCACCTTGGCTATGAATTTGTGCTCAAACAGAATTTG
AAACAGTACGCTGGTCGATCGGTAAATGAGGTAGCCAATCTCGTTGTTGC
AGGTGAGATGTATGTATATGGGTGGCGGCATGGCGAGGATCATCTCACAG
CGTCCAAGGTTGAAAAGGCTGGTCTGAAAAATGAGGGAGTTGATCAAGTG
CTTGAAGAATGGATAGGAGCCCACGGCGCC

BS09511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3910-PA 1359 mtTFB2-RA 496..1359 880..17 4320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 591..1454 880..17 4320 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10046776..10047202 443..17 2135 100 Minus
3R 32079331 3R 10046398..10046714 760..444 1585 100 Minus
3R 32079331 3R 10046217..10046336 880..761 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:14:05 has no hits.

BS09511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:56 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 496..1359 17..880 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:32 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 496..1359 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:07:13 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 591..1454 17..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:31 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 591..1454 17..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:31 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10046217..10046336 761..880 100 -> Minus
3R 10046398..10046714 444..760 100 -> Minus
3R 10046776..10047202 17..443 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:07:13 Download gff for BS09511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871939..5872058 761..880 100 -> Minus
arm_3R 5872120..5872436 444..760 100 -> Minus
arm_3R 5872498..5872924 17..443 100   Minus

BS09511.5prime Sequence

900 bp (718 high quality bases) assembled on 2006-04-19

> BS09511.5prime
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCNAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT

BS09511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3910-PA 1359 mtTFB2-RA 1..884 17..900 4401 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 96..979 17..900 4409 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10045669..10046143 17..491 2375 100 Plus
3R 32079331 3R 10046398..10046666 632..900 1334 99.6 Plus
3R 32079331 3R 10046196..10046336 491..631 705 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:47:50 has no hits.

BS09511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:57 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:34 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3910-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:28 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 93..979 14..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:33 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 93..979 14..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:33 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10045666..10046143 14..491 99 -> Plus
3R 10046197..10046336 492..631 100 -> Plus
3R 10046398..10046666 632..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:28 Download gff for BS09511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871388..5871865 14..491 99 -> Plus
arm_3R 5871919..5872058 492..631 100 -> Plus
arm_3R 5872120..5872388 632..900 99   Plus

BS09511.complete Sequence

1391 bp (1391 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636435

> BS09511.complete
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACCCAATTTAGAAA
AGTGGGTTCCCGGCTGTGGACCTCGGCTTATCATTAATCCGAAGTCCTCC
GAGTCCGTAACACCCATCTATCCAGATGAATTGCCCAAGAAACTACCACA
GTACTCGTGCCAGAGTACTACAATGAGCACCAGAAACTACTATCCCGGCA
TCAACATCTACACACAGTTCGGAGATCTCCTGCCCAGTCAGATTCTGACG
CTATTTAGTCAGTTTCGTCAGTGGCCGGAGTACGGCGAGAGCTCTTTCCT
CGCCTCGCTGGAAAATGCGCTGCTCAAGCTGGAGACTGCCAATGACGAAC
CAAACCTAGAGGATGGCGTCACGTTGCCAGAAGAGGATGATGCCGAAGCA
GATGAAATTATCGAAGAAGAAAGCCCTGTACCCGCCACCACTCCCGTCAA
GAGGCGCAGGAAAGCCAGTTCTTAGAAGCTTTCTAGACCAT

BS09511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1359 CG3910-PA 1..1359 17..1375 6795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-RA 1512 CG3910-RA 96..1454 17..1375 6795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10045669..10046143 17..491 2375 100 Plus
3R 32079331 3R 10046776..10047202 949..1375 2135 100 Plus
3R 32079331 3R 10046398..10046714 632..948 1585 100 Plus
3R 32079331 3R 10046196..10046336 491..631 705 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:13:29 has no hits.

BS09511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:01 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 1..1359 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:19 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 91..1452 14..1375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:09:26 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 96..1454 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:01 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 91..1452 14..1375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:36 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB2-RA 96..1454 17..1375 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:36 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10045669..10046143 17..491 100 -> Plus
3R 10046197..10046336 492..631 100 -> Plus
3R 10046398..10046714 632..948 100 -> Plus
3R 10046776..10047202 949..1375 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:09:26 Download gff for BS09511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5871391..5871865 17..491 100 -> Plus
arm_3R 5871919..5872058 492..631 100 -> Plus
arm_3R 5872120..5872436 632..948 100 -> Plus
arm_3R 5872498..5872924 949..1375 100   Plus

BS09511.pep Sequence

Translation from 16 to 1374

> BS09511.pep
MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE
AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES
MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD
VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP
PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS
PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV
SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS
TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN
ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA
SS*

BS09511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB2-PA 452 CG3910-PA 1..452 1..452 2381 100 Plus