Clone Sequence Records
BS09511.3prime Sequence
880 bp (854 high quality bases) assembled on 2006-04-19
> BS09511.3prime
ATGGTCTAGAAAGCTTCTAAGAACTGGCTTTCCTGCGCCTCTTGACGGGA
GTGGTGGCGGGTACAGGGCTTTCTTCTTCGATAATTTCATCTGCTTCGGC
ATCATCCTCTTCTGGCAACGTGACGCCATCCTCTAGGTTTGGTTCGTCAT
TGGCAGTCTCCAGCTTGAGCAGCGCATTTTCCAGCGAGGCGAGGAAAGAG
CTCTCGCCGTACTCCGGCCACTGACGAAACTGACTAAATAGCGTCAGAAT
CTGACTGGGCAGGAGATCTCCGAACTGTGTGTAGATGTTGATGCCGGGAT
AGTAGTTTCTGGTGCTCATTGTAGTACTCTGGCACGAGTACTGTGGTAGT
TTCTTGGGCAATTCATCTGGATAGATGGGTGTTACGGACTCGGAGGACTT
CGGATTAATGATAAGCCGAGGTCCACAGCCGGGAACCCACTTTTCTAAAT
TGGGTATTATTCTGTTTCGTCGGCTTACATAGTTCTGCTTAATGAAGAAC
CAGAGAGCGGGTAGATCCTGCGACTGGCACAGCTCATGAAGATTGCGGCG
CGGAGTGAATTTCACCAAGTACAAGTACTCGGGATTGATGGACTGCACCT
TACCCAACTTGCTACTCTTGGTGGGGCTATAGGCCATCTGCTGAGGTAGA
AAATCCTCGCGCGGCACCTTGGCTATGAATTTGTGCTCAAACAGAATTTG
AAACAGTACGCTGGTCGATCGGTAAATGAGGTAGCCAATCTCGTTGTTGC
AGGTGAGATGTATGTATATGGGTGGCGGCATGGCGAGGATCATCTCACAG
CGTCCAAGGTTGAAAAGGCTGGTCTGAAAAATGAGGGAGTTGATCAAGTG
CTTGAAGAATGGATAGGAGCCCACGGCGCC
BS09511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3910-PA | 1359 | mtTFB2-RA | 496..1359 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 591..1454 | 880..17 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10046776..10047202 | 443..17 | 2135 | 100 | Minus |
3R | 32079331 | 3R | 10046398..10046714 | 760..444 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 10046217..10046336 | 880..761 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:14:05 has no hits.
BS09511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:56 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 496..1359 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:32 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 496..1359 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:07:13 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 591..1454 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:31 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 591..1454 | 17..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:31 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10046217..10046336 | 761..880 | 100 | -> | Minus |
3R | 10046398..10046714 | 444..760 | 100 | -> | Minus |
3R | 10046776..10047202 | 17..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:07:13 Download gff for
BS09511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871939..5872058 | 761..880 | 100 | -> | Minus |
arm_3R | 5872120..5872436 | 444..760 | 100 | -> | Minus |
arm_3R | 5872498..5872924 | 17..443 | 100 | | Minus |
BS09511.5prime Sequence
900 bp (718 high quality bases) assembled on 2006-04-19
> BS09511.5prime
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCNAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
BS09511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3910-PA | 1359 | mtTFB2-RA | 1..884 | 17..900 | 4401 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 96..979 | 17..900 | 4409 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10045669..10046143 | 17..491 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 10046398..10046666 | 632..900 | 1334 | 99.6 | Plus |
3R | 32079331 | 3R | 10046196..10046336 | 491..631 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:47:50 has no hits.
BS09511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:11:57 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:22:34 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3910-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:47:28 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 93..979 | 14..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:33 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 93..979 | 14..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:33 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10045666..10046143 | 14..491 | 99 | -> | Plus |
3R | 10046197..10046336 | 492..631 | 100 | -> | Plus |
3R | 10046398..10046666 | 632..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:47:28 Download gff for
BS09511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871388..5871865 | 14..491 | 99 | -> | Plus |
arm_3R | 5871919..5872058 | 492..631 | 100 | -> | Plus |
arm_3R | 5872120..5872388 | 632..900 | 99 | | Plus |
BS09511.complete Sequence
1391 bp (1391 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636435
> BS09511.complete
GAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCC
GGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGAT
TTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTA
CATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCC
ATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCT
GGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCAT
AATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTAC
ACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAAC
CTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGC
GGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACA
TGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATC
AACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGAT
GATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGCAACAACG
AGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTG
TTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCA
GCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGT
CCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAAT
CTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTTCTTCAT
TAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACCCAATTTAGAAA
AGTGGGTTCCCGGCTGTGGACCTCGGCTTATCATTAATCCGAAGTCCTCC
GAGTCCGTAACACCCATCTATCCAGATGAATTGCCCAAGAAACTACCACA
GTACTCGTGCCAGAGTACTACAATGAGCACCAGAAACTACTATCCCGGCA
TCAACATCTACACACAGTTCGGAGATCTCCTGCCCAGTCAGATTCTGACG
CTATTTAGTCAGTTTCGTCAGTGGCCGGAGTACGGCGAGAGCTCTTTCCT
CGCCTCGCTGGAAAATGCGCTGCTCAAGCTGGAGACTGCCAATGACGAAC
CAAACCTAGAGGATGGCGTCACGTTGCCAGAAGAGGATGATGCCGAAGCA
GATGAAATTATCGAAGAAGAAAGCCCTGTACCCGCCACCACTCCCGTCAA
GAGGCGCAGGAAAGCCAGTTCTTAGAAGCTTTCTAGACCAT
BS09511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1359 | CG3910-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-RA | 1512 | CG3910-RA | 96..1454 | 17..1375 | 6795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10045669..10046143 | 17..491 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 10046776..10047202 | 949..1375 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 10046398..10046714 | 632..948 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 10046196..10046336 | 491..631 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:13:29 has no hits.
BS09511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:01 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:19 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 91..1452 | 14..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:09:26 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 96..1454 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:01 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 91..1452 | 14..1375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:36 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB2-RA | 96..1454 | 17..1375 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:36 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10045669..10046143 | 17..491 | 100 | -> | Plus |
3R | 10046197..10046336 | 492..631 | 100 | -> | Plus |
3R | 10046398..10046714 | 632..948 | 100 | -> | Plus |
3R | 10046776..10047202 | 949..1375 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:09:26 Download gff for
BS09511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5871391..5871865 | 17..491 | 100 | -> | Plus |
arm_3R | 5871919..5872058 | 492..631 | 100 | -> | Plus |
arm_3R | 5872120..5872436 | 632..948 | 100 | -> | Plus |
arm_3R | 5872498..5872924 | 949..1375 | 100 | | Plus |
BS09511.pep Sequence
Translation from 16 to 1374
> BS09511.pep
MLPLRCSWSFARANYSTKKELVTRYSGDFPEKLLNRKQKVPTHMYIANSE
AAARINQYLEPHFQSSGCDTVMELNSGAGYFTRHLLDRESQFRRIILLES
MDHFMPKIQELHTLYPERVKVRQGDFVNLWKLVYMDKMDGGSRVADLLSD
VPQKAFTDDINMLVFGAVGSYPFFKHLINSLIFQTSLFNLGRCEMILAMP
PPIYIHLTCNNEIGYLIYRSTSVLFQILFEHKFIAKVPREDFLPQQMAYS
PTKSSKLGKVQSINPEYLYLVKFTPRRNLHELCQSQDLPALWFFIKQNYV
SRRNRIIPNLEKWVPGCGPRLIINPKSSESVTPIYPDELPKKLPQYSCQS
TTMSTRNYYPGINIYTQFGDLLPSQILTLFSQFRQWPEYGESSFLASLEN
ALLKLETANDEPNLEDGVTLPEEDDAEADEIIEEESPVPATTPVKRRRKA
SS*
BS09511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB2-PA | 452 | CG3910-PA | 1..452 | 1..452 | 2381 | 100 | Plus |