Clone BS09521 Report

Search the DGRC for BS09521

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptLcch3-RC
Protein status:BS09521.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09521.3prime Sequence

948 bp (811 high quality bases) assembled on 2006-04-19

> BS09521.3prime
ATGGTCTAGAAAGCTTTCATTCCAGAATATAAAACAGCCAGTAGCCAAGA
TTGAACGCAAGAAAACTGATCGGAAATATCATTCGGGAGTATTTGTCAAT
AATATTGACATCTTTGATCTTCGGTATGGTTGCCTTAATAGCAGAGGCAC
CTCTCTTCAGGGCGTGCAACATGCGTGGGCGGGTTGAGATACCCCTTTGG
GCGCGACGTCTAAGCTGGCTATGTCCGGTGCCATAATTACGAGTTATTCG
AAAACTTGGGGGGAACTTTCCTAGATTCATGGTCTCGGTGCCGATGGAGT
CGAGGGTGGCATTGTAGGTACCTCTTCGCAAAGATGGTATAGGACTCATT
CGAACATCCTGCAGCTCGATAATGTCCTCTGTCGTTGAACACGTCTCGGA
TCTTTCACTCTTTCCGATCTTGCCTGGACAACATTCTTTGACTTTCTTTA
TTTTCTTTTTAGCCCTTTTGCCCCAGTAAGTATAGTTAACGGCAGCGTAT
TCCAAGAGGGCTGCGAACACGAAAACGAAGCACATGACCAGATAAATGTC
GATCGCCTTCACATACGATATGCGCGGCAGTGAGCTGCGAACACCCGTGC
TAATGGTGGTCATGGTGAGCACCGTGGTGATGCCCAATGCAACCCGGGCA
CTCGTCGCCTCGTGGTTAATCCAGAACGAGACCCACGACAGCATTACGAT
CAGAATGCTGGGCAGATAAGTTTGGAATACAAAGTATCCGATATTCCGTT
GCAGTTTGAATGAGAGCGAGAGGCGCTGATAGACTCCAGTGGCCAGCCGC
TCCTTTCGGTCATTGGTCTCATACCCAATGATGGTGAACTGCGGCAGCTC
CGCATCCTCCACTCCGCGCACTGGCGTTGGCTTCCAGTACATGACCACAT
CGCTGACCGTGTATCCATAGCTCTCAATTTCCACAGTGCAATTCTGCG

BS09521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17336-PC 1491 Lcch3-RC 560..1491 948..17 4660 100 Minus
CG17336-PB 1491 Lcch3-RB 560..1491 948..17 4660 100 Minus
CG17336-PA 1491 Lcch3-RA 560..1491 948..17 4660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lcch3-RC 1903 CG17336-RC 850..1781 948..17 4660 100 Minus
Ranbp16-RE 3950 CG33180-RE 3297..3754 461..918 2290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15927381..15927885 918..414 2525 100 Minus
X 23542271 X 15927950..15928176 415..189 1135 100 Minus
X 23542271 X 15928231..15928407 193..17 885 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:41:40 has no hits.

BS09521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:18 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-PB 560..1491 17..948 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:03 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17336-PA 560..1491 17..948 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:09 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 850..1781 17..948 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:20 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 850..1781 17..948 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:20 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15926945..15926974 919..948 100 -> Minus
X 15927381..15927884 415..918 100 -> Minus
X 15927951..15928172 193..414 100 -> Minus
X 15928232..15928407 17..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:09 Download gff for BS09521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15820978..15821007 919..948 100 -> Minus
arm_X 15821414..15821917 415..918 100 -> Minus
arm_X 15821984..15822205 193..414 100 -> Minus
arm_X 15822265..15822440 17..192 100   Minus

BS09521.5prime Sequence

960 bp (859 high quality bases) assembled on 2006-04-19

> BS09521.5prime
GAAGTTATCAGTCGACATGACATGTTTTACGCGCGTCGGAGTATCCTGTG
GCCTGTTCTTTTTCCTACTGGGCGCCCAGCTACAATTGATTCGATGCATT
CGAAAGGATGTACTAGCTGGCCGCCTTGAGAACGTCACGCAAACAATATC
AAACATACTGCAAGGATACGATATTCGACTTAGGCCCAATTTCGGAGGAG
AGCCACTACATGTCGGCATGGATTTGACCATCGCCAGCTTTGATGCCATA
TCAGAAGTTAACATGGATTATACGATAACAATGTATTTAAATCAGTATTG
GCGCGACGAGCGTTTGGCATTTAATATCTTTGGACAATATTTCGACGATG
AGAATGATGATGGCATAAGCGATGTGCTGACATTATCCGGAGACTTTGCT
GAAAAGATATGGGTACCGGATACGTTCTTCGCCAATGACAAAAACAGTTT
TCTGCACGATGTCACCGAAAGGAACAAACTGGTGCGACTTGGCGGCGATG
GAGCTGTTACTTATGGCATGAGATTCACCACGACCCTCGCCTGCATGATG
GATCTGCACTACTATCCATTGGACTCGCAGAATTGCACTGTGGAAATTGA
GAGCTATGGATACACGGTCAGCGATGTGGTCATGTACTGGAAGCCAACGC
CAGTGCGCGGAGTGGAGGATGCGGAGCTGCCGCAGTTCACCATCATTGGG
TATGAGACCAATGACCGAAAGGAGCGGCTGGCCACTGGAGTCTATCAGCG
CCTCTCGCTCTCATTCAAACTGCAACGGAATATCGGATACTTTGTATTCC
AAACTTATCTGCCCAGCATTCTGATCGTAATGCTGTCGTGGGTCTCGTTC
TGGATTAACACGAGGCGACGAGTGCCCGGGTTGCATTGGGCATCACCACG
GTGCTCACCATGACCACCATTAGCACGGGTGTTCGCAGCTCACTGCCGCG
CATATCGTAA

BS09521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17336-PC 1491 Lcch3-RC 1..843 17..859 4215 100 Plus
CG17336-PB 1491 Lcch3-RB 1..843 17..859 4215 100 Plus
CG17336-PA 1491 Lcch3-RA 1..843 17..859 4215 100 Plus
CG17336-PC 1491 Lcch3-RC 844..944 859..959 505 100 Plus
CG17336-PB 1491 Lcch3-RB 844..944 859..959 505 100 Plus
CG17336-PA 1491 Lcch3-RA 844..944 859..959 505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Lcch3-RC 1903 CG17336-RC 291..1234 17..959 4695 99.9 Plus
Ranbp16-RE 3950 CG33180-RE 3400..3754 959..606 1750 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15927381..15927735 606..959 1725 99.7 Plus
X 23542271 X 15926571..15926753 265..447 915 100 Plus
X 23542271 X 15926331..15926504 93..266 870 100 Plus
X 23542271 X 15926815..15926974 446..605 800 100 Plus
X 23542271 X 15926152..15926228 17..93 385 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:31:16 has no hits.

BS09521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:19 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-PB 1..943 17..958 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:05 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17336-PA 1..943 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:40 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 285..1234 11..960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:02 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 285..1234 11..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:02 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15926146..15926228 11..93 97 -> Plus
X 15926332..15926503 94..265 100 -> Plus
X 15926572..15926753 266..447 100 -> Plus
X 15926817..15926974 448..605 100 -> Plus
X 15927381..15927735 606..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:40 Download gff for BS09521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15820179..15820261 11..93 97 -> Plus
arm_X 15820365..15820536 94..265 100 -> Plus
arm_X 15820605..15820786 266..447 100 -> Plus
arm_X 15820850..15821007 448..605 100 -> Plus
arm_X 15821414..15821768 606..960 99   Plus

BS09521.complete Sequence

1523 bp (1523 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636436

> BS09521.complete
GAAGTTATCAGTCGACATGACATGTTTTACGCGCGTCGGAGTATCCTGTG
GCCTGTTCTTTTTCCTACTGGGCGCCCAGCTACAATTGATTCGATGCATT
CGAAAGGATGTACTAGCTGGCCGCCTTGAGAACGTCACGCAAACAATATC
AAACATACTGCAAGGATACGATATTCGACTTAGGCCCAATTTCGGAGGAG
AGCCACTACATGTCGGCATGGATTTGACCATCGCCAGCTTTGATGCCATA
TCAGAAGTTAACATGGATTATACGATAACAATGTATTTAAATCAGTATTG
GCGCGACGAGCGTTTGGCATTTAATATCTTTGGACAATATTTCGACGATG
AGAATGATGATGGCATAAGCGATGTGCTGACATTATCCGGAGACTTTGCT
GAAAAGATATGGGTACCGGATACGTTCTTCGCCAATGACAAAAACAGTTT
TCTGCACGATGTCACCGAAAGGAACAAACTGGTGCGACTTGGCGGCGATG
GAGCTGTTACTTATGGCATGAGATTCACCACGACCCTCGCCTGCATGATG
GATCTGCACTACTATCCATTGGACTCGCAGAATTGCACTGTGGAAATTGA
GAGCTATGGATACACGGTCAGCGATGTGGTCATGTACTGGAAGCCAACGC
CAGTGCGCGGAGTGGAGGATGCGGAGCTGCCGCAGTTCACCATCATTGGG
TATGAGACCAATGACCGAAAGGAGCGGCTGGCCACTGGAGTCTATCAGCG
CCTCTCGCTCTCATTCAAACTGCAACGGAATATCGGATACTTTGTATTCC
AAACTTATCTGCCCAGCATTCTGATCGTAATGCTGTCGTGGGTCTCGTTC
TGGATTAACCACGAGGCGACGAGTGCCCGGGTTGCATTGGGCATCACCAC
GGTGCTCACCATGACCACCATTAGCACGGGTGTTCGCAGCTCACTGCCGC
GCATATCGTATGTGAAGGCGATCGACATTTATCTGGTCATGTGCTTCGTT
TTCGTGTTCGCAGCCCTCTTGGAATACGCTGCCGTTAACTATACTTACTG
GGGCAAAAGGGCTAAAAAGAAAATAAAGAAAGTCAAAGAATGTTGTCCAG
GCAAGATCGGAAAGAGTGAAAGATCCGAGACGTGTTCAACGACAGAGGAC
ATTATCGAGCTGCAGGATGTTCGAATGAGTCCTATACCATCTTTGCGAAG
AGGTACCTACAATGCCACCCTCGACTCCATCGGCACCGAGACCATGAATC
TAGGAAAGTTCCCCCCAAGTTTTCGAATAACTCGTAATTATGGCACCGGA
CATAGCCAGCTTAGACGTCGCGCCCAAAGGGGTATCTCAACCCGCCCACG
CATGTTGCACGCCCTGAAGAGAGGTGCCTCTGCTATTAAGGCAACCATAC
CGAAGATCAAAGATGTCAATATTATTGACAAATACTCCCGAATGATATTT
CCGATCAGTTTTCTTGCGTTCAATCTTGGCTACTGGCTGTTTTATATTCT
GGAATGAAAGCTTTCTAGACCAT

BS09521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Lcch3-RC 1491 CG17336-PC 1..1491 17..1507 7455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Lcch3-RC 1903 CG17336-RC 291..1781 17..1507 7455 100 Plus
Ranbp16-RE 3950 CG33180-RE 3297..3754 1063..606 2290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15927381..15927885 606..1110 2525 100 Plus
X 23542271 X 15927950..15928176 1109..1335 1135 100 Plus
X 23542271 X 15926571..15926753 265..447 915 100 Plus
X 23542271 X 15928231..15928407 1331..1507 885 100 Plus
X 23542271 X 15926331..15926504 93..266 870 100 Plus
X 23542271 X 15926815..15926974 446..605 800 100 Plus
X 23542271 X 15926152..15926228 17..93 385 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:27:58 has no hits.

BS09521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:02 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RA 1..1491 17..1507 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:21 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RA 1091..2587 11..1507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:46:57 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 291..1780 17..1506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:02 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RA 1091..2587 11..1507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:59 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
Lcch3-RC 291..1780 17..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:59 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
X 15926152..15926228 17..93 100 -> Plus
X 15926332..15926503 94..265 100 -> Plus
X 15926572..15926753 266..447 100 -> Plus
X 15926817..15926974 448..605 100 -> Plus
X 15927381..15927884 606..1109 100 -> Plus
X 15927951..15928172 1110..1331 100 -> Plus
X 15928232..15928406 1332..1506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:46:57 Download gff for BS09521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15820185..15820261 17..93 100 -> Plus
arm_X 15820365..15820536 94..265 100 -> Plus
arm_X 15820605..15820786 266..447 100 -> Plus
arm_X 15820850..15821007 448..605 100 -> Plus
arm_X 15821414..15821917 606..1109 100 -> Plus
arm_X 15821984..15822205 1110..1331 100 -> Plus
arm_X 15822265..15822439 1332..1506 100   Plus

BS09521.pep Sequence

Translation from 16 to 1506

> BS09521.pep
MTCFTRVGVSCGLFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNILQG
YDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERL
AFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVT
ERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYT
VSDVVMYWKPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSF
KLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT
TISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAK
KKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNA
TLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHAL
KRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYILE*

BS09521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Lcch3-PC 496 CG17336-PC 1..496 1..496 2592 100 Plus
Rdl-PD 579 CG10537-PD 58..353 39..342 740 44.4 Plus
Rdl-PG 608 CG10537-PG 58..353 39..342 740 44.4 Plus
Rdl-PC 606 CG10537-PC 58..353 39..342 738 44.4 Plus
Rdl-PF 606 CG10537-PF 58..353 39..342 734 44.4 Plus