Clone Sequence Records
BS09521.3prime Sequence
948 bp (811 high quality bases) assembled on 2006-04-19
> BS09521.3prime
ATGGTCTAGAAAGCTTTCATTCCAGAATATAAAACAGCCAGTAGCCAAGA
TTGAACGCAAGAAAACTGATCGGAAATATCATTCGGGAGTATTTGTCAAT
AATATTGACATCTTTGATCTTCGGTATGGTTGCCTTAATAGCAGAGGCAC
CTCTCTTCAGGGCGTGCAACATGCGTGGGCGGGTTGAGATACCCCTTTGG
GCGCGACGTCTAAGCTGGCTATGTCCGGTGCCATAATTACGAGTTATTCG
AAAACTTGGGGGGAACTTTCCTAGATTCATGGTCTCGGTGCCGATGGAGT
CGAGGGTGGCATTGTAGGTACCTCTTCGCAAAGATGGTATAGGACTCATT
CGAACATCCTGCAGCTCGATAATGTCCTCTGTCGTTGAACACGTCTCGGA
TCTTTCACTCTTTCCGATCTTGCCTGGACAACATTCTTTGACTTTCTTTA
TTTTCTTTTTAGCCCTTTTGCCCCAGTAAGTATAGTTAACGGCAGCGTAT
TCCAAGAGGGCTGCGAACACGAAAACGAAGCACATGACCAGATAAATGTC
GATCGCCTTCACATACGATATGCGCGGCAGTGAGCTGCGAACACCCGTGC
TAATGGTGGTCATGGTGAGCACCGTGGTGATGCCCAATGCAACCCGGGCA
CTCGTCGCCTCGTGGTTAATCCAGAACGAGACCCACGACAGCATTACGAT
CAGAATGCTGGGCAGATAAGTTTGGAATACAAAGTATCCGATATTCCGTT
GCAGTTTGAATGAGAGCGAGAGGCGCTGATAGACTCCAGTGGCCAGCCGC
TCCTTTCGGTCATTGGTCTCATACCCAATGATGGTGAACTGCGGCAGCTC
CGCATCCTCCACTCCGCGCACTGGCGTTGGCTTCCAGTACATGACCACAT
CGCTGACCGTGTATCCATAGCTCTCAATTTCCACAGTGCAATTCTGCG
BS09521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17336-PC | 1491 | Lcch3-RC | 560..1491 | 948..17 | 4660 | 100 | Minus |
CG17336-PB | 1491 | Lcch3-RB | 560..1491 | 948..17 | 4660 | 100 | Minus |
CG17336-PA | 1491 | Lcch3-RA | 560..1491 | 948..17 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcch3-RC | 1903 | CG17336-RC | 850..1781 | 948..17 | 4660 | 100 | Minus |
Ranbp16-RE | 3950 | CG33180-RE | 3297..3754 | 461..918 | 2290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15927381..15927885 | 918..414 | 2525 | 100 | Minus |
X | 23542271 | X | 15927950..15928176 | 415..189 | 1135 | 100 | Minus |
X | 23542271 | X | 15928231..15928407 | 193..17 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:41:40 has no hits.
BS09521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:18 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-PB | 560..1491 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:03 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17336-PA | 560..1491 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:09 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 850..1781 | 17..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:20 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 850..1781 | 17..948 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:20 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15926945..15926974 | 919..948 | 100 | -> | Minus |
X | 15927381..15927884 | 415..918 | 100 | -> | Minus |
X | 15927951..15928172 | 193..414 | 100 | -> | Minus |
X | 15928232..15928407 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:09 Download gff for
BS09521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15820978..15821007 | 919..948 | 100 | -> | Minus |
arm_X | 15821414..15821917 | 415..918 | 100 | -> | Minus |
arm_X | 15821984..15822205 | 193..414 | 100 | -> | Minus |
arm_X | 15822265..15822440 | 17..192 | 100 | | Minus |
BS09521.5prime Sequence
960 bp (859 high quality bases) assembled on 2006-04-19
> BS09521.5prime
GAAGTTATCAGTCGACATGACATGTTTTACGCGCGTCGGAGTATCCTGTG
GCCTGTTCTTTTTCCTACTGGGCGCCCAGCTACAATTGATTCGATGCATT
CGAAAGGATGTACTAGCTGGCCGCCTTGAGAACGTCACGCAAACAATATC
AAACATACTGCAAGGATACGATATTCGACTTAGGCCCAATTTCGGAGGAG
AGCCACTACATGTCGGCATGGATTTGACCATCGCCAGCTTTGATGCCATA
TCAGAAGTTAACATGGATTATACGATAACAATGTATTTAAATCAGTATTG
GCGCGACGAGCGTTTGGCATTTAATATCTTTGGACAATATTTCGACGATG
AGAATGATGATGGCATAAGCGATGTGCTGACATTATCCGGAGACTTTGCT
GAAAAGATATGGGTACCGGATACGTTCTTCGCCAATGACAAAAACAGTTT
TCTGCACGATGTCACCGAAAGGAACAAACTGGTGCGACTTGGCGGCGATG
GAGCTGTTACTTATGGCATGAGATTCACCACGACCCTCGCCTGCATGATG
GATCTGCACTACTATCCATTGGACTCGCAGAATTGCACTGTGGAAATTGA
GAGCTATGGATACACGGTCAGCGATGTGGTCATGTACTGGAAGCCAACGC
CAGTGCGCGGAGTGGAGGATGCGGAGCTGCCGCAGTTCACCATCATTGGG
TATGAGACCAATGACCGAAAGGAGCGGCTGGCCACTGGAGTCTATCAGCG
CCTCTCGCTCTCATTCAAACTGCAACGGAATATCGGATACTTTGTATTCC
AAACTTATCTGCCCAGCATTCTGATCGTAATGCTGTCGTGGGTCTCGTTC
TGGATTAACACGAGGCGACGAGTGCCCGGGTTGCATTGGGCATCACCACG
GTGCTCACCATGACCACCATTAGCACGGGTGTTCGCAGCTCACTGCCGCG
CATATCGTAA
BS09521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17336-PC | 1491 | Lcch3-RC | 1..843 | 17..859 | 4215 | 100 | Plus |
CG17336-PB | 1491 | Lcch3-RB | 1..843 | 17..859 | 4215 | 100 | Plus |
CG17336-PA | 1491 | Lcch3-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG17336-PC | 1491 | Lcch3-RC | 844..944 | 859..959 | 505 | 100 | Plus |
CG17336-PB | 1491 | Lcch3-RB | 844..944 | 859..959 | 505 | 100 | Plus |
CG17336-PA | 1491 | Lcch3-RA | 844..944 | 859..959 | 505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcch3-RC | 1903 | CG17336-RC | 291..1234 | 17..959 | 4695 | 99.9 | Plus |
Ranbp16-RE | 3950 | CG33180-RE | 3400..3754 | 959..606 | 1750 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15927381..15927735 | 606..959 | 1725 | 99.7 | Plus |
X | 23542271 | X | 15926571..15926753 | 265..447 | 915 | 100 | Plus |
X | 23542271 | X | 15926331..15926504 | 93..266 | 870 | 100 | Plus |
X | 23542271 | X | 15926815..15926974 | 446..605 | 800 | 100 | Plus |
X | 23542271 | X | 15926152..15926228 | 17..93 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:31:16 has no hits.
BS09521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:19 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-PB | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:05 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17336-PA | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:24:40 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 285..1234 | 11..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:02 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 285..1234 | 11..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:02 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15926146..15926228 | 11..93 | 97 | -> | Plus |
X | 15926332..15926503 | 94..265 | 100 | -> | Plus |
X | 15926572..15926753 | 266..447 | 100 | -> | Plus |
X | 15926817..15926974 | 448..605 | 100 | -> | Plus |
X | 15927381..15927735 | 606..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:24:40 Download gff for
BS09521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15820179..15820261 | 11..93 | 97 | -> | Plus |
arm_X | 15820365..15820536 | 94..265 | 100 | -> | Plus |
arm_X | 15820605..15820786 | 266..447 | 100 | -> | Plus |
arm_X | 15820850..15821007 | 448..605 | 100 | -> | Plus |
arm_X | 15821414..15821768 | 606..960 | 99 | | Plus |
BS09521.complete Sequence
1523 bp (1523 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636436
> BS09521.complete
GAAGTTATCAGTCGACATGACATGTTTTACGCGCGTCGGAGTATCCTGTG
GCCTGTTCTTTTTCCTACTGGGCGCCCAGCTACAATTGATTCGATGCATT
CGAAAGGATGTACTAGCTGGCCGCCTTGAGAACGTCACGCAAACAATATC
AAACATACTGCAAGGATACGATATTCGACTTAGGCCCAATTTCGGAGGAG
AGCCACTACATGTCGGCATGGATTTGACCATCGCCAGCTTTGATGCCATA
TCAGAAGTTAACATGGATTATACGATAACAATGTATTTAAATCAGTATTG
GCGCGACGAGCGTTTGGCATTTAATATCTTTGGACAATATTTCGACGATG
AGAATGATGATGGCATAAGCGATGTGCTGACATTATCCGGAGACTTTGCT
GAAAAGATATGGGTACCGGATACGTTCTTCGCCAATGACAAAAACAGTTT
TCTGCACGATGTCACCGAAAGGAACAAACTGGTGCGACTTGGCGGCGATG
GAGCTGTTACTTATGGCATGAGATTCACCACGACCCTCGCCTGCATGATG
GATCTGCACTACTATCCATTGGACTCGCAGAATTGCACTGTGGAAATTGA
GAGCTATGGATACACGGTCAGCGATGTGGTCATGTACTGGAAGCCAACGC
CAGTGCGCGGAGTGGAGGATGCGGAGCTGCCGCAGTTCACCATCATTGGG
TATGAGACCAATGACCGAAAGGAGCGGCTGGCCACTGGAGTCTATCAGCG
CCTCTCGCTCTCATTCAAACTGCAACGGAATATCGGATACTTTGTATTCC
AAACTTATCTGCCCAGCATTCTGATCGTAATGCTGTCGTGGGTCTCGTTC
TGGATTAACCACGAGGCGACGAGTGCCCGGGTTGCATTGGGCATCACCAC
GGTGCTCACCATGACCACCATTAGCACGGGTGTTCGCAGCTCACTGCCGC
GCATATCGTATGTGAAGGCGATCGACATTTATCTGGTCATGTGCTTCGTT
TTCGTGTTCGCAGCCCTCTTGGAATACGCTGCCGTTAACTATACTTACTG
GGGCAAAAGGGCTAAAAAGAAAATAAAGAAAGTCAAAGAATGTTGTCCAG
GCAAGATCGGAAAGAGTGAAAGATCCGAGACGTGTTCAACGACAGAGGAC
ATTATCGAGCTGCAGGATGTTCGAATGAGTCCTATACCATCTTTGCGAAG
AGGTACCTACAATGCCACCCTCGACTCCATCGGCACCGAGACCATGAATC
TAGGAAAGTTCCCCCCAAGTTTTCGAATAACTCGTAATTATGGCACCGGA
CATAGCCAGCTTAGACGTCGCGCCCAAAGGGGTATCTCAACCCGCCCACG
CATGTTGCACGCCCTGAAGAGAGGTGCCTCTGCTATTAAGGCAACCATAC
CGAAGATCAAAGATGTCAATATTATTGACAAATACTCCCGAATGATATTT
CCGATCAGTTTTCTTGCGTTCAATCTTGGCTACTGGCTGTTTTATATTCT
GGAATGAAAGCTTTCTAGACCAT
BS09521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcch3-RC | 1491 | CG17336-PC | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcch3-RC | 1903 | CG17336-RC | 291..1781 | 17..1507 | 7455 | 100 | Plus |
Ranbp16-RE | 3950 | CG33180-RE | 3297..3754 | 1063..606 | 2290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15927381..15927885 | 606..1110 | 2525 | 100 | Plus |
X | 23542271 | X | 15927950..15928176 | 1109..1335 | 1135 | 100 | Plus |
X | 23542271 | X | 15926571..15926753 | 265..447 | 915 | 100 | Plus |
X | 23542271 | X | 15928231..15928407 | 1331..1507 | 885 | 100 | Plus |
X | 23542271 | X | 15926331..15926504 | 93..266 | 870 | 100 | Plus |
X | 23542271 | X | 15926815..15926974 | 446..605 | 800 | 100 | Plus |
X | 23542271 | X | 15926152..15926228 | 17..93 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:27:58 has no hits.
BS09521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:02 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RA | 1..1491 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:21 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RA | 1091..2587 | 11..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:46:57 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 291..1780 | 17..1506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:02 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RA | 1091..2587 | 11..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:59 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcch3-RC | 291..1780 | 17..1506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:59 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15926152..15926228 | 17..93 | 100 | -> | Plus |
X | 15926332..15926503 | 94..265 | 100 | -> | Plus |
X | 15926572..15926753 | 266..447 | 100 | -> | Plus |
X | 15926817..15926974 | 448..605 | 100 | -> | Plus |
X | 15927381..15927884 | 606..1109 | 100 | -> | Plus |
X | 15927951..15928172 | 1110..1331 | 100 | -> | Plus |
X | 15928232..15928406 | 1332..1506 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:46:57 Download gff for
BS09521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15820185..15820261 | 17..93 | 100 | -> | Plus |
arm_X | 15820365..15820536 | 94..265 | 100 | -> | Plus |
arm_X | 15820605..15820786 | 266..447 | 100 | -> | Plus |
arm_X | 15820850..15821007 | 448..605 | 100 | -> | Plus |
arm_X | 15821414..15821917 | 606..1109 | 100 | -> | Plus |
arm_X | 15821984..15822205 | 1110..1331 | 100 | -> | Plus |
arm_X | 15822265..15822439 | 1332..1506 | 100 | | Plus |
BS09521.pep Sequence
Translation from 16 to 1506
> BS09521.pep
MTCFTRVGVSCGLFFFLLGAQLQLIRCIRKDVLAGRLENVTQTISNILQG
YDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYTITMYLNQYWRDERL
AFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFLHDVT
ERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYT
VSDVVMYWKPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSF
KLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMT
TISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWGKRAK
KKIKKVKECCPGKIGKSERSETCSTTEDIIELQDVRMSPIPSLRRGTYNA
TLDSIGTETMNLGKFPPSFRITRNYGTGHSQLRRRAQRGISTRPRMLHAL
KRGASAIKATIPKIKDVNIIDKYSRMIFPISFLAFNLGYWLFYILE*
BS09521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcch3-PC | 496 | CG17336-PC | 1..496 | 1..496 | 2592 | 100 | Plus |
Rdl-PD | 579 | CG10537-PD | 58..353 | 39..342 | 740 | 44.4 | Plus |
Rdl-PG | 608 | CG10537-PG | 58..353 | 39..342 | 740 | 44.4 | Plus |
Rdl-PC | 606 | CG10537-PC | 58..353 | 39..342 | 738 | 44.4 | Plus |
Rdl-PF | 606 | CG10537-PF | 58..353 | 39..342 | 734 | 44.4 | Plus |