Clone BS09525 Report

Search the DGRC for BS09525

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG3987-RA
Protein status:BS09525.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09525.3prime Sequence

894 bp (860 high quality bases) assembled on 2006-04-19

> BS09525.3prime
ATGGTCTAGAAAGCTTTCAGTTGTGCTTGCGATTGCGTTTGCTGTAGGCT
GATCTCACAAAGTGGTGACGGCTTGGACGGCGTCTCCTTCGCTGAACTGA
AACGTTGTAGTCGTCGTCGTCGACCAGATGTTCAGGTGACCCGCTGTTCT
GCGAGCCTTTGTATTCCGCGTCTAGGCATTTTTCGATGTCGTCACATAGA
GTCCATCCATCGTCATCATCATCTGCAATGGTTTTATCTACACTGGTGTC
ACCGCTGTTGCCATTATTATTGTTCTGTATGGCCGGTATATTGTTAAAGG
CTGGATATGCCACATAATATGGATTGTACATCCAAGGAGGATTATACATG
AGGGGAGCTCCGTATCCCTGGAAACAACCGGCACACTGGGCGGGCAGACC
ATTTTGCAGAATGTATCCGTAGGGATAATTGAGGCAGTGCTCGCAGATAG
AGGTCTTAGGCCTCGTCGGCTGGGCAAAATCACTATTTTGGCCTGGATTC
TGTCCGCAATTGAAGTAGGGCCAACTGTTGCCAGTGTAATGACACCGTGT
AGCCTTGGGTGTCCTCCGCTGGAGGGTTCTCCTCCTCCGTGGCACATATT
CGATGGTTTCGTGACACCTGTCGGAGTCCTCGGCTTCACACTGCACCACT
ATTTTGGCCAACATCACTCTGGCCTGACACTTTTCGCCACAGATCCGCTG
ACGGCTTCTTTCTCTGCAGTCGCGTCCATCTTCATTCTTACACTCGCGAT
CCAAACGCACCACATAACAGCACGATCCCTTGTCAGTGTAGCCCAGTCCA
AAACGTCCTCCCACCTTCGAGACATTCTGATTCACCTGGACATTGACCTC
ATTGCGATTTTGGATTTGATGTTCGATTATATTGTTGATATCGT

BS09525.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-PA 1215 CG3987-RA 338..1215 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1483 CG3987-RA 427..1304 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15140659..15141536 894..17 4390 100 Minus
Blast to na_te.dros performed 2015-02-10 19:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 4442..4484 251..293 116 74.4 Plus

BS09525.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:27 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-PA 338..1215 17..894 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:17 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-PA 338..1215 17..894 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:29:22 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 427..1304 17..894 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:14 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 427..1304 17..894 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:14 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15140659..15141536 17..894 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:29:22 Download gff for BS09525.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10966381..10967258 17..894 100   Minus

BS09525.5prime Sequence

814 bp (813 high quality bases) assembled on 2006-04-19

> BS09525.5prime
GAAGTTATCAGTCGACATGGCACATTCAATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGC

BS09525.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-PA 1215 CG3987-RA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1483 CG3987-RA 90..887 17..814 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15140336..15141119 31..814 3920 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:05:13 has no hits.

BS09525.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:28 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:18 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:06 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 81..887 9..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:38:22 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 81..887 9..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:38:22 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15140337..15141119 32..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:06 Download gff for BS09525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10966059..10966841 32..814 100   Plus

BS09525.complete Sequence

1247 bp (1247 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636437

> BS09525.complete
GAAGTTATCAGTCGACATGGCACATTCAATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGCCTCAATTATCCCTACGGATACATTCTGCAAAATGGT
CTGCCCGCCCAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCCCTCAT
GTATAATCCTCCTTGGATGTACAATCCATATTATGTGGCATATCCAGCCT
TTAACAATATACCGGCCATACAGAACAATAATAATGGCAACAGCGGTGAC
ACCAGTGTAGATAAAACCATTGCAGATGATGATGACGATGGATGGACTCT
ATGTGACGACATCGAAAAATGCCTAGACGCGGAATACAAAGGCTCGCAGA
ACAGCGGGTCACCTGAACATCTGGTCGACGACGACGACTACAACGTTTCA
GTTCAGCGAAGGAGACGCCGTCCAAGCCGTCACCACTTTGTGAGATCAGC
CTACAGCAAACGCAATCGCAAGCACAACTGAAAGCTTTCTAGACCAT

BS09525.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1215 CG3987-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1483 CG3987-RA 90..1304 17..1231 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15140336..15141536 31..1231 6005 100 Plus
Blast to na_te.dros performed 2014-11-27 15:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 4442..4484 997..955 116 74.4 Minus

BS09525.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:05 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 1..1215 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:24 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 54..1277 9..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:40 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 90..1303 17..1230 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:05 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 54..1277 9..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:02 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 90..1303 17..1230 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:02 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15140337..15141535 32..1230 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:40 Download gff for BS09525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10966059..10967257 32..1230 100   Plus

BS09525.pep Sequence

Translation from 16 to 1230

> BS09525.pep
MAHSMLKLGMMCGILHLLTFGVIAEDQLKNNTIVVHTPLQNYDQPNLQDY
EECQVNRDNCINVCAGKQSCEDECPVCPDLYVKPLMVQGINDTNIVAPPQ
VPINTTNIIRLTNDINNIIEHQIQNRNEVNVQVNQNVSKVGGRFGLGYTD
KGSCCYVVRLDRECKNEDGRDCRERSRQRICGEKCQARVMLAKIVVQCEA
EDSDRCHETIEYVPRRRRTLQRRTPKATRCHYTGNSWPYFNCGQNPGQNS
DFAQPTRPKTSICEHCLNYPYGYILQNGLPAQCAGCFQGYGAPLMYNPPW
MYNPYYVAYPAFNNIPAIQNNNNGNSGDTSVDKTIADDDDDGWTLCDDIE
KCLDAEYKGSQNSGSPEHLVDDDDYNVSVQRRRRRPSRHHFVRSAYSKRN
RKHN*

BS09525.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-PA 404 CG3987-PA 1..404 1..404 2244 100 Plus