Clone Sequence Records
BS09525.3prime Sequence
894 bp (860 high quality bases) assembled on 2006-04-19
> BS09525.3prime
ATGGTCTAGAAAGCTTTCAGTTGTGCTTGCGATTGCGTTTGCTGTAGGCT
GATCTCACAAAGTGGTGACGGCTTGGACGGCGTCTCCTTCGCTGAACTGA
AACGTTGTAGTCGTCGTCGTCGACCAGATGTTCAGGTGACCCGCTGTTCT
GCGAGCCTTTGTATTCCGCGTCTAGGCATTTTTCGATGTCGTCACATAGA
GTCCATCCATCGTCATCATCATCTGCAATGGTTTTATCTACACTGGTGTC
ACCGCTGTTGCCATTATTATTGTTCTGTATGGCCGGTATATTGTTAAAGG
CTGGATATGCCACATAATATGGATTGTACATCCAAGGAGGATTATACATG
AGGGGAGCTCCGTATCCCTGGAAACAACCGGCACACTGGGCGGGCAGACC
ATTTTGCAGAATGTATCCGTAGGGATAATTGAGGCAGTGCTCGCAGATAG
AGGTCTTAGGCCTCGTCGGCTGGGCAAAATCACTATTTTGGCCTGGATTC
TGTCCGCAATTGAAGTAGGGCCAACTGTTGCCAGTGTAATGACACCGTGT
AGCCTTGGGTGTCCTCCGCTGGAGGGTTCTCCTCCTCCGTGGCACATATT
CGATGGTTTCGTGACACCTGTCGGAGTCCTCGGCTTCACACTGCACCACT
ATTTTGGCCAACATCACTCTGGCCTGACACTTTTCGCCACAGATCCGCTG
ACGGCTTCTTTCTCTGCAGTCGCGTCCATCTTCATTCTTACACTCGCGAT
CCAAACGCACCACATAACAGCACGATCCCTTGTCAGTGTAGCCCAGTCCA
AAACGTCCTCCCACCTTCGAGACATTCTGATTCACCTGGACATTGACCTC
ATTGCGATTTTGGATTTGATGTTCGATTATATTGTTGATATCGT
BS09525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-PA | 1215 | CG3987-RA | 338..1215 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-RA | 1483 | CG3987-RA | 427..1304 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15140659..15141536 | 894..17 | 4390 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 19:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4442..4484 | 251..293 | 116 | 74.4 | Plus |
BS09525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:27 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-PA | 338..1215 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:17 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-PA | 338..1215 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:29:22 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 427..1304 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:14 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 427..1304 | 17..894 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:14 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15140659..15141536 | 17..894 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:29:22 Download gff for
BS09525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10966381..10967258 | 17..894 | 100 | | Minus |
BS09525.5prime Sequence
814 bp (813 high quality bases) assembled on 2006-04-19
> BS09525.5prime
GAAGTTATCAGTCGACATGGCACATTCAATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGC
BS09525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-PA | 1215 | CG3987-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-RA | 1483 | CG3987-RA | 90..887 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15140336..15141119 | 31..814 | 3920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:05:13 has no hits.
BS09525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:28 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:18 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:06 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 81..887 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:38:22 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 81..887 | 9..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:38:22 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15140337..15141119 | 32..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:06 Download gff for
BS09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10966059..10966841 | 32..814 | 100 | | Plus |
BS09525.complete Sequence
1247 bp (1247 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636437
> BS09525.complete
GAAGTTATCAGTCGACATGGCACATTCAATGCTGAAACTGGGGATGATGT
GTGGAATACTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTG
AAAAACAACACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACC
CAATCTCCAGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCA
ATGTTTGCGCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCG
GACCTGTACGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATAT
AGTGGCACCACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGA
CCAACGATATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAG
GTCAATGTCCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGG
ACTGGGCTACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATC
GCGAGTGTAAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAG
CGGATCTGTGGCGAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGT
GGTGCAGTGTGAAGCCGAGGACTCCGACAGGTGTCACGAAACCATCGAAT
ATGTGCCACGGAGGAGGAGAACCCTCCAGCGGAGGACACCCAAGGCTACA
CGGTGTCATTACACTGGCAACAGTTGGCCCTACTTCAATTGCGGACAGAA
TCCAGGCCAAAATAGTGATTTTGCCCAGCCGACGAGGCCTAAGACCTCTA
TCTGCGAGCACTGCCTCAATTATCCCTACGGATACATTCTGCAAAATGGT
CTGCCCGCCCAGTGTGCCGGTTGTTTCCAGGGATACGGAGCTCCCCTCAT
GTATAATCCTCCTTGGATGTACAATCCATATTATGTGGCATATCCAGCCT
TTAACAATATACCGGCCATACAGAACAATAATAATGGCAACAGCGGTGAC
ACCAGTGTAGATAAAACCATTGCAGATGATGATGACGATGGATGGACTCT
ATGTGACGACATCGAAAAATGCCTAGACGCGGAATACAAAGGCTCGCAGA
ACAGCGGGTCACCTGAACATCTGGTCGACGACGACGACTACAACGTTTCA
GTTCAGCGAAGGAGACGCCGTCCAAGCCGTCACCACTTTGTGAGATCAGC
CTACAGCAAACGCAATCGCAAGCACAACTGAAAGCTTTCTAGACCAT
BS09525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-RA | 1215 | CG3987-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-RA | 1483 | CG3987-RA | 90..1304 | 17..1231 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15140336..15141536 | 31..1231 | 6005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4442..4484 | 997..955 | 116 | 74.4 | Minus |
BS09525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:05 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 1..1215 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:24 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 54..1277 | 9..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:40 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 90..1303 | 17..1230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:05 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 54..1277 | 9..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:02 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3987-RA | 90..1303 | 17..1230 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:02 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15140337..15141535 | 32..1230 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:40 Download gff for
BS09525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10966059..10967257 | 32..1230 | 100 | | Plus |
BS09525.pep Sequence
Translation from 16 to 1230
> BS09525.pep
MAHSMLKLGMMCGILHLLTFGVIAEDQLKNNTIVVHTPLQNYDQPNLQDY
EECQVNRDNCINVCAGKQSCEDECPVCPDLYVKPLMVQGINDTNIVAPPQ
VPINTTNIIRLTNDINNIIEHQIQNRNEVNVQVNQNVSKVGGRFGLGYTD
KGSCCYVVRLDRECKNEDGRDCRERSRQRICGEKCQARVMLAKIVVQCEA
EDSDRCHETIEYVPRRRRTLQRRTPKATRCHYTGNSWPYFNCGQNPGQNS
DFAQPTRPKTSICEHCLNYPYGYILQNGLPAQCAGCFQGYGAPLMYNPPW
MYNPYYVAYPAFNNIPAIQNNNNGNSGDTSVDKTIADDDDDGWTLCDDIE
KCLDAEYKGSQNSGSPEHLVDDDDYNVSVQRRRRRPSRHHFVRSAYSKRN
RKHN*
BS09525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3987-PA | 404 | CG3987-PA | 1..404 | 1..404 | 2244 | 100 | Plus |