Clone Sequence Records
BS09527.3prime Sequence
897 bp (855 high quality bases) assembled on 2006-04-19
> BS09527.3prime
ATGGTCTAGAAAGCTTTTAAAGAAAGTTTGACTTCTCCGCGGCGTTTTGA
GATCCGCTGCTCTGGTTCGACCAACCGGTGTTCCCATTCTGTGGCTCCGA
GTTGTCGGTCTTTATTCCGTTGGCGGCCGGATTGTTGTTCGGGTTATTCG
GCCCCTTCCGTCCACCAAAGTTGTTGGCATTGTTGTGGCCCCCGTTCTGA
GCCATCCAAGATAGAAAATTGCCGCCCTGTTGGTCCTGGTTTTGGTTCTG
CAGCTGGTTGCCGACCAGGCTCCACTGGTTCAAGGCGGCAGCGACCAGTG
CGGGATTGATGGGCAATGAGTTGAGATTGAGCATTGACTGGTTGCTCATG
TTTTGGCCCTGGTTGGAGGAGCTCGATCCCTGCGAGTTGATGCCCAGGGC
CTGCAGGTTGGGCATGTCCAGGTGGCCACGGTTCATCCAGCCGTTGCTGC
CGCCCACGTTGCCGTTATGCGGCTGGTTCATTCCGTGAAAATTCGACTGG
CGACTGTTGTACTGGCTGCCGCCGTCCTGGCGGTTCGTGTTCCCGCCACT
GGAGTGATTGCCGCCATTGTTGTGGTAGCCCCCGCCCGAGTTGCCGCCGT
AATTGTTGCCACCCATGCCGTAGCCGGCGGTGCCAATGTTGTGATTATTG
GGCACAATTGCGTTCTCACCGCCGTGAGCATTGTGTTGGTTATTACCTCG
GTGGTGTCCGTTGCGGCCCGGATTCATGTGGTTACCCTGTGGGTGGTATG
AGTGCATGCCAAAGCTGTTGGCAGAGTTGTAGTTGTAGCTCTGGACCTGT
TGGTTTCTGTTCTGCTCGGCCTTTGGAGCAGCATTCGACACATGGACCGA
AACGCCCCTTGATATGTGATCCTCTCCGCACAGGGACTGTGCCACGT
BS09527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10327-PB | 1596 | TBPH-RB | 756..1596 | 857..17 | 4205 | 100 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 756..1596 | 857..17 | 4205 | 100 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 756..1596 | 857..17 | 4205 | 100 | Minus |
| CG10327-PA | 999 | TBPH-RA | 756..917 | 857..696 | 810 | 100 | Minus |
| CG10327-PA | 999 | TBPH-RA | 915..999 | 228..144 | 425 | 100 | Minus |
| CG10327-PB | 1596 | TBPH-RB | 716..749 | 897..864 | 170 | 100 | Minus |
| CG10327-PC | 1596 | TBPH-RC | 716..749 | 897..864 | 170 | 100 | Minus |
| CG10327-PD | 1596 | TBPH-RD | 716..749 | 897..864 | 170 | 100 | Minus |
| CG10327-PA | 999 | TBPH-RA | 716..749 | 897..864 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 834..1714 | 897..17 | 4360 | 99.8 | Minus |
| TBPH-RE | 2159 | CG10327-RE | 1063..1943 | 897..17 | 4360 | 99.8 | Minus |
| TBPH-RD | 2156 | CG10327-RD | 1060..1940 | 897..17 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23859886..23860516 | 226..856 | 3155 | 100 | Plus |
| 2R | 25286936 | 2R | 23859690..23859830 | 89..229 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 23859546..23859620 | 17..91 | 375 | 100 | Plus |
| 3L | 28110227 | 3L | 15472742..15472848 | 776..882 | 235 | 81.3 | Plus |
| 3L | 28110227 | 3L | 15472527..15472588 | 359..420 | 205 | 88.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:44 has no hits.
BS09527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:32 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-PC | 716..1596 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:22 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10327-PD | 716..1596 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:15:06 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1060..1943 | 13..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:07 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1060..1943 | 13..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:07 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23859543..23859617 | 13..88 | 97 | <- | Plus |
| 2R | 23859690..23859827 | 89..226 | 100 | <- | Plus |
| 2R | 23859887..23860515 | 227..855 | 100 | <- | Plus |
| 2R | 23860571..23860612 | 856..897 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:15:06 Download gff for
BS09527.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19747066..19747140 | 13..88 | 97 | <- | Plus |
| arm_2R | 19747213..19747350 | 89..226 | 100 | <- | Plus |
| arm_2R | 19747410..19748038 | 227..855 | 100 | <- | Plus |
| arm_2R | 19748094..19748135 | 856..897 | 95 | | Plus |
BS09527.5prime Sequence
936 bp (778 high quality bases) assembled on 2006-04-19
> BS09527.5prime
GAAGTTATCAGTCGACATGGATTTCGTTCAAGTGTCGGAGGAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTCTGCTTCTGTCC
ACACTGCAAGCTCAGTTCCCTGGATCCTGCGGTCTGAAGTACCGCAACCT
GGACACGAAGGCTGTGCGCGGAGTTCGCTCCAACGAGGGCAGACTGTTTC
CGCCCAGCGTGGAGTCCGGCTGGGGCGAGTACGCTTACTTTTGCGTCTTT
CCCAAGGAGAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGC
CAAGACCAAACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGC
TCGGCTTGCCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAG
ACCTACGGCGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGG
CCAGTCCAAGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGA
TGCGCGTGCTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTT
AAGGTGCCCAACTCGAAGGGCATGGGCCACCAGGTGCCTTGCAAGGTGTT
CGTGGGCCGCTGCACCGAGGACATTAACTCGGACGACTTGCGCGAGTATT
TCTCCAAGTTTGGCGAAGTCACTGATGTGTTCATTCCCCGGCCCTTCAGG
GCCTTTAGCTTTGTAACCTTCCTTGATCCCGACGTGGCACAGTCCCTGTG
CGGAGAGGATCACATTATCAAGGGCGTTTCGGTCCATGTGTCGAATGCTG
CTCCAAAGGCCGAGCAGAACAGAAACCAACAGGTCCAGAGCTACAACTAC
AACTCTGCCAACAGCTTTGGCATGCACTCATACCACCCACAGGGTAACCA
CATGAATCCGGGCCGCTACGGACACCACCGAGGTAA
BS09527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10327-PB | 1596 | TBPH-RB | 1..920 | 17..936 | 4575 | 99.8 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 1..920 | 17..936 | 4575 | 99.8 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 1..920 | 17..936 | 4575 | 99.8 | Plus |
| CG10327-PA | 999 | TBPH-RA | 1..917 | 17..933 | 4560 | 99.8 | Plus |
| CG7804-PA | 957 | CG7804-RA | 200..342 | 216..358 | 365 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 6..92 | 22..108 | 310 | 94.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 410..487 | 426..503 | 265 | 93.5 | Plus |
| CG7804-PA | 957 | CG7804-RA | 517..608 | 533..624 | 235 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 113..193 | 129..209 | 230 | 91.3 | Plus |
| CG7804-PA | 957 | CG7804-RA | 367..395 | 383..411 | 145 | 100 | Plus |
| CG7804-PA | 957 | CG7804-RA | 661..704 | 677..720 | 145 | 93.1 | Plus |
| CG7804-PA | 957 | CG7804-RA | 731..784 | 747..800 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 119..1038 | 17..936 | 4585 | 99.9 | Plus |
| TBPH-RE | 2159 | CG10327-RE | 348..1267 | 17..936 | 4585 | 99.9 | Plus |
| TBPH-RD | 2156 | CG10327-RD | 345..1264 | 17..936 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472742..15473578 | 853..17 | 2385 | 85.7 | Minus |
| 2R | 25286936 | 2R | 23860832..23861144 | 569..257 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 23861206..23861446 | 257..17 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 23860570..23860777 | 774..567 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 23860353..23860516 | 936..773 | 805 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:04:34 has no hits.
BS09527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:33 Download gff for
BS09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-PD | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:24 Download gff for
BS09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10327-PC | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:44:59 Download gff for
BS09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 336..1264 | 5..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:35:29 Download gff for
BS09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 336..1264 | 5..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-13 12:35:29 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-09-02 09:44:59 has no hits.
BS09527.complete Sequence
1628 bp (1628 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636438
> BS09527.complete
GAAGTTATCAGTCGACATGGATTTCGTTCAAGTGTCGGAGGAGGAGGGCG
ACGAGCCCATCGAGCTGCCGGCTGAGGAGGATGGCACTCTGCTTCTGTCC
ACACTGCAAGCTCAGTTCCCTGGATCCTGCGGTCTGAAGTACCGCAACCT
GGACACGAAGGCTGTGCGCGGAGTTCGCTCCAACGAGGGCAGACTGTTTC
CGCCCAGCGTGGAGTCCGGCTGGGGCGAGTACGCTTACTTTTGCGTCTTT
CCCAAGGAGAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGC
CAAGACCAAACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGC
TCGGCTTGCCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAG
ACCTACGGCGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGG
CCAGTCCAAGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGA
TGCGCGTGCTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTT
AAGGTGCCCAACTCGAAGGGCATGGGCCACCAGGTGCCTTGCAAGGTGTT
CGTGGGCCGCTGCACCGAGGACATTAACTCGGACGACTTGCGCGAGTATT
TCTCCAAGTTTGGCGAAGTCACTGATGTGTTCATTCCCCGGCCCTTCAGG
GCCTTTAGCTTTGTAACCTTCCTTGATCCCGACGTGGCACAGTCCCTGTG
CGGAGAGGATCACATTATCAAGGGCGTTTCGGTCCATGTGTCGAATGCTG
CTCCAAAGGCCGAGCAGAACAGAAACCAACAGGTCCAGAGCTACAACTAC
AACTCTGCCAACAGCTTTGGCATGCACTCATACCACCCACAGGGTAACCA
CATGAATCCGGGCCGCAACGGACACCACCGAGGTAATAACCAACACAATG
CTCACGGCGGTGAGAACGCAATTGTGCCCAATAATCACAACATTGGCACC
GCCGGCTACGGCATGGGTGGCAACAATTACGGCGGCAACTCGGGCGGGGG
CTACCACAACAATGGCGGCAATCACTCCAGTGGCGGGAACACGAACCGCC
AGGACGGCGGCAGCCAGTACAACAGTCGCCAGTCGAATTTTCACGGAATG
AACCAGCCGCATAACGGCAACGTGGGCGGCAGCAACGGCTGGATGAACCG
TGGCCACCTGGACATGCCCAACCTGCAGGCCCTGGGCATCAACTCGCAGG
GATCGAGCTCCTCCAACCAGGGCCAAAACATGAGCAACCAGTCAATGCTC
AATCTCAACTCATTGCCCATCAATCCCGCACTGGTCGCTGCCGCCTTGAA
CCAGTGGAGCCTGGTCGGCAACCAGCTGCAGAACCAAAACCAGGACCAAC
AGGGCGGCAATTTTCTATCTTGGATGGCTCAGAACGGGGGCCACAACAAT
GCCAACAACTTTGGTGGACGGAAGGGGCCGAATAACCCGAACAACAATCC
GGCCGCCAACGGAATAAAGACCGACAACTCGGAGCCACAGAATGGGAACA
CCGGTTGGTCGAACCAGAGCAGCGGATCTCAAAACGCCGCGGAGAAGTCA
AACTTTCTTTAAAAGCTTTCTAGACCAT
BS09527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1596 | CG10327-PF | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| TBPH-RE | 1596 | CG10327-PE | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| TBPH-RD | 1596 | CG10327-PD | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 119..1714 | 17..1612 | 7980 | 100 | Plus |
| TBPH-RE | 2159 | CG10327-RE | 348..1943 | 17..1612 | 7980 | 100 | Plus |
| TBPH-RD | 2156 | CG10327-RD | 345..1940 | 17..1612 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23859886..23860516 | 1403..773 | 3155 | 100 | Minus |
| 3L | 28110227 | 3L | 15472742..15473578 | 853..17 | 2385 | 85.7 | Minus |
| 2R | 25286936 | 2R | 23860832..23861144 | 569..257 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 23861206..23861446 | 257..17 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 23860570..23860777 | 774..567 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 23859690..23859830 | 1540..1400 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 23859546..23859620 | 1612..1538 | 375 | 100 | Minus |
| 3L | 28110227 | 3L | 15472527..15472588 | 1270..1209 | 205 | 88.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:29 has no hits.
BS09527.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:06 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 1..1596 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:25 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 324..1931 | 5..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:05 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 345..1938 | 17..1610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:06 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 324..1931 | 5..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:18 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 345..1938 | 17..1610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:18 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23859548..23859617 | 1541..1610 | 100 | <- | Minus |
| 2R | 23859690..23859827 | 1403..1540 | 100 | <- | Minus |
| 2R | 23859887..23860515 | 774..1402 | 100 | <- | Minus |
| 2R | 23860571..23860775 | 569..773 | 100 | <- | Minus |
| 2R | 23860833..23861143 | 258..568 | 100 | <- | Minus |
| 2R | 23861206..23861446 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:05 Download gff for
BS09527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19747213..19747350 | 1403..1540 | 100 | <- | Minus |
| arm_2R | 19747071..19747140 | 1541..1610 | 100 | <- | Minus |
| arm_2R | 19747410..19748038 | 774..1402 | 100 | <- | Minus |
| arm_2R | 19748094..19748298 | 569..773 | 100 | <- | Minus |
| arm_2R | 19748356..19748666 | 258..568 | 100 | <- | Minus |
| arm_2R | 19748729..19748969 | 17..257 | 100 | | Minus |
BS09527.pep Sequence
Translation from 16 to 1611
> BS09527.pep
MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAV
RGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRI
ETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGF
GFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCT
EDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHI
IKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGR
NGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNG
GNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDM
PNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLV
GNQLQNQNQDQQGGNFLSWMAQNGGHNNANNFGGRKGPNNPNNNPAANGI
KTDNSEPQNGNTGWSNQSSGSQNAAEKSNFL*
BS09527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-PF | 531 | CG10327-PF | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PE | 531 | CG10327-PE | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PD | 531 | CG10327-PD | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PC | 531 | CG10327-PC | 1..531 | 1..531 | 2886 | 100 | Plus |
| TBPH-PB | 531 | CG10327-PB | 1..531 | 1..531 | 2886 | 100 | Plus |
