Clone BS09535 Report

Search the DGRC for BS09535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG7149-RA
Protein status:BS09535.pep: full length peptide match
Sequenced Size:1280

Clone Sequence Records

BS09535.5prime Sequence

907 bp (838 high quality bases) assembled on 2006-04-19

> BS09535.5prime
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGGTCGTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATA

BS09535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PA 1248 CG7149-RA 1..822 17..838 4110 100 Plus
CG7149-PA 1248 CG7149-RA 827..891 843..907 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 2191 CG7149-RC 480..1370 17..907 4410 99.8 Plus
CG7149-RB 1902 CG7149-RB 480..1370 17..907 4410 99.8 Plus
CG7149-RA 2467 CG7149-RA 480..1370 17..907 4410 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7787833..7788091 587..329 1295 100 Minus
2L 23513712 2L 7788151..7788339 329..141 945 100 Minus
2L 23513712 2L 7787613..7787768 741..586 780 100 Minus
2L 23513712 2L 7787387..7787552 907..742 770 97.6 Minus
2L 23513712 2L 7788399..7788469 142..72 355 100 Minus
2L 23513712 2L 7790022..7790078 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:08:01 has no hits.

BS09535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:48 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:42 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:31 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1369 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:46 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1369 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:46 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7787388..7787552 742..906 98 <- Minus
2L 7787613..7787767 587..741 100 <- Minus
2L 7787834..7788090 330..586 100 <- Minus
2L 7788151..7788337 143..329 100 <- Minus
2L 7788399..7788467 74..142 100 <- Minus
2L 7790022..7790078 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:31 Download gff for BS09535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7787388..7787552 742..906 98 <- Minus
arm_2L 7787613..7787767 587..741 100 <- Minus
arm_2L 7787834..7788090 330..586 100 <- Minus
arm_2L 7788151..7788337 143..329 100 <- Minus
arm_2L 7788399..7788467 74..142 100 <- Minus
arm_2L 7790022..7790078 17..73 100   Minus

BS09535.complete Sequence

1280 bp assembled on 2008-08-14

> BS09535.complete
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGACTGATAGTGGCCCAAATGTCGG
ACACGCGTTGCGATGCCTTCAATGTGCTCATGTGGCCACTGGCCGCCACA
GTAGGAGTCTGCTGTTTTCCCTACTACCAGCAGGTCTTCGACTCAGATCT
GACATCGGACACCGAACGATGGATACTCTATGGTCTAACCATTTTCTCAA
CTTTAGCTCACTGGCACTACGGCTACGGCGTGGTTTCTGAGATGTGCGAC
CACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGG
TTCAGATATAACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGT
TGAAAAGCCATTGAAAGCTTTCTAGACCAT

BS09535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 1248 CG7149-PC 1..1248 17..1264 6240 100 Plus
CG7149-RA 1248 CG7149-PA 1..1248 17..1264 6240 100 Plus
CG7149-RB 1245 CG7149-PB 1..1158 17..1174 5790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-RC 2191 CG7149-RC 480..1729 17..1266 6250 100 Plus
CG7149-RA 2467 CG7149-RA 480..1729 17..1266 6250 100 Plus
CG7149-RB 1902 CG7149-RB 480..1637 17..1174 5790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7787833..7788091 587..329 1295 100 Minus
2L 23513712 2L 7787093..7787304 1134..923 1060 100 Minus
2L 23513712 2L 7788151..7788339 329..141 945 100 Minus
2L 23513712 2L 7787372..7787552 922..742 905 100 Minus
2L 23513712 2L 7787613..7787768 741..586 780 100 Minus
2L 23513712 2L 7786898..7787032 1266..1132 675 100 Minus
2L 23513712 2L 7788399..7788469 142..72 355 100 Minus
2L 23513712 2L 7790022..7790078 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:03:11 has no hits.

BS09535.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:19 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1731 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:34 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1726 17..1263 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:47 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1726 17..1263 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:16 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
CG7149-RA 480..1726 17..1263 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:16 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7786901..7787031 1133..1263 100 <- Minus
2L 7787095..7787304 923..1132 100 <- Minus
2L 7787372..7787552 742..922 100 <- Minus
2L 7787613..7787767 587..741 100 <- Minus
2L 7787834..7788090 330..586 100 <- Minus
2L 7788151..7788337 143..329 100 <- Minus
2L 7788399..7788467 74..142 100 <- Minus
2L 7790022..7790078 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:34 Download gff for BS09535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7787095..7787304 923..1132 100 <- Minus
arm_2L 7787372..7787552 742..922 100 <- Minus
arm_2L 7786901..7787031 1133..1263 100 <- Minus
arm_2L 7787613..7787767 587..741 100 <- Minus
arm_2L 7787834..7788090 330..586 100 <- Minus
arm_2L 7788151..7788337 143..329 100 <- Minus
arm_2L 7788399..7788467 74..142 100 <- Minus
arm_2L 7790022..7790078 17..73 100   Minus

BS09535.pep Sequence

Translation from 16 to 1263

> BS09535.pep
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSH*

BS09535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7149-PC 415 CG7149-PC 1..415 1..415 2266 100 Plus
CG7149-PA 415 CG7149-PA 1..415 1..415 2266 100 Plus
CG7149-PB 414 CG7149-PB 1..391 1..391 2129 99 Plus
CG33116-PA 427 CG33116-PA 12..397 5..393 1012 48.1 Plus
bbc-PC 417 CG6016-PC 12..375 7..387 338 26.9 Plus