Clone Sequence Records
BS09535.5prime Sequence
907 bp (838 high quality bases) assembled on 2006-04-19
> BS09535.5prime
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGGTCGTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATA
BS09535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-PA | 1248 | CG7149-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
CG7149-PA | 1248 | CG7149-RA | 827..891 | 843..907 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 2191 | CG7149-RC | 480..1370 | 17..907 | 4410 | 99.8 | Plus |
CG7149-RB | 1902 | CG7149-RB | 480..1370 | 17..907 | 4410 | 99.8 | Plus |
CG7149-RA | 2467 | CG7149-RA | 480..1370 | 17..907 | 4410 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7787833..7788091 | 587..329 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 7788151..7788339 | 329..141 | 945 | 100 | Minus |
2L | 23513712 | 2L | 7787613..7787768 | 741..586 | 780 | 100 | Minus |
2L | 23513712 | 2L | 7787387..7787552 | 907..742 | 770 | 97.6 | Minus |
2L | 23513712 | 2L | 7788399..7788469 | 142..72 | 355 | 100 | Minus |
2L | 23513712 | 2L | 7790022..7790078 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:08:01 has no hits.
BS09535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:48 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:42 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:31 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1369 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:46 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1369 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:46 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7787388..7787552 | 742..906 | 98 | <- | Minus |
2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
2L | 7790022..7790078 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:31 Download gff for
BS09535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7787388..7787552 | 742..906 | 98 | <- | Minus |
arm_2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
arm_2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
arm_2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
arm_2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
arm_2L | 7790022..7790078 | 17..73 | 100 | | Minus |
BS09535.complete Sequence
1280 bp assembled on 2008-08-14
> BS09535.complete
GAAGTTATCAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATT
TGAGGGGCTTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTC
AGCGTCTATGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCC
CAAATGGCTGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTG
TCGTCAACTTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCC
AATTCAGAGACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGC
CATAAATATACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGG
CTCGAAGAACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGA
TTGGACTCCTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATT
CGGCACACACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACG
TATTTCTCAACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTT
ATGTTCTTGCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCAT
GCTGTTTGTGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATAT
ATGGTTTCACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGC
ATGGTCAGCAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAA
AAACAAGACTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTT
TCGCCTTCGTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCG
CGAAACGATGTGATTAACAAGGAGCCACGCATTTTATGGATACTCTATGG
CACGATATTTTCAAATATTGCATGCCGACTGATAGTGGCCCAAATGTCGG
ACACGCGTTGCGATGCCTTCAATGTGCTCATGTGGCCACTGGCCGCCACA
GTAGGAGTCTGCTGTTTTCCCTACTACCAGCAGGTCTTCGACTCAGATCT
GACATCGGACACCGAACGATGGATACTCTATGGTCTAACCATTTTCTCAA
CTTTAGCTCACTGGCACTACGGCTACGGCGTGGTTTCTGAGATGTGCGAC
CACTTTCACATTCGCTGCTTCAAAGTAAGAAAATCTAGCAGCCAATCGGG
TTCAGATATAACTCAACCACTTCTGCAGAACAATAACAAAATCAAACCGT
TGAAAAGCCATTGAAAGCTTTCTAGACCAT
BS09535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 1248 | CG7149-PC | 1..1248 | 17..1264 | 6240 | 100 | Plus |
CG7149-RA | 1248 | CG7149-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
CG7149-RB | 1245 | CG7149-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-RC | 2191 | CG7149-RC | 480..1729 | 17..1266 | 6250 | 100 | Plus |
CG7149-RA | 2467 | CG7149-RA | 480..1729 | 17..1266 | 6250 | 100 | Plus |
CG7149-RB | 1902 | CG7149-RB | 480..1637 | 17..1174 | 5790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7787833..7788091 | 587..329 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 7787093..7787304 | 1134..923 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 7788151..7788339 | 329..141 | 945 | 100 | Minus |
2L | 23513712 | 2L | 7787372..7787552 | 922..742 | 905 | 100 | Minus |
2L | 23513712 | 2L | 7787613..7787768 | 741..586 | 780 | 100 | Minus |
2L | 23513712 | 2L | 7786898..7787032 | 1266..1132 | 675 | 100 | Minus |
2L | 23513712 | 2L | 7788399..7788469 | 142..72 | 355 | 100 | Minus |
2L | 23513712 | 2L | 7790022..7790078 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:03:11 has no hits.
BS09535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:19 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1731 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:34 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1726 | 17..1263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:47 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1726 | 17..1263 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:16 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7149-RA | 480..1726 | 17..1263 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:16 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7786901..7787031 | 1133..1263 | 100 | <- | Minus |
2L | 7787095..7787304 | 923..1132 | 100 | <- | Minus |
2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
2L | 7790022..7790078 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:34 Download gff for
BS09535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7787095..7787304 | 923..1132 | 100 | <- | Minus |
arm_2L | 7787372..7787552 | 742..922 | 100 | <- | Minus |
arm_2L | 7786901..7787031 | 1133..1263 | 100 | <- | Minus |
arm_2L | 7787613..7787767 | 587..741 | 100 | <- | Minus |
arm_2L | 7787834..7788090 | 330..586 | 100 | <- | Minus |
arm_2L | 7788151..7788337 | 143..329 | 100 | <- | Minus |
arm_2L | 7788399..7788467 | 74..142 | 100 | <- | Minus |
arm_2L | 7790022..7790078 | 17..73 | 100 | | Minus |
BS09535.pep Sequence
Translation from 16 to 1263
> BS09535.pep
MGCMRYLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAP
NVLTFVGFLMTVVNFILIAYYDWGFEAANSETGNTVPAWVWTVAAINILI
YYNLDGMDGKQARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGTHDL
PPIRMFFVIWNVFLNFYLTHVEKYNTGVMFLPWGYDFTMWGVSGMLFVAT
VFGPEMYRFSIYGFTMANMFEFVLIGSGMVSSHPIIARNIYLSYKNKTGK
MRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVINKEPRILWILYGTIFSN
IACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYYQQVFDSDLTSDTE
RWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSSQSGSDITQ
PLLQNNNKIKPLKSH*
BS09535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7149-PC | 415 | CG7149-PC | 1..415 | 1..415 | 2266 | 100 | Plus |
CG7149-PA | 415 | CG7149-PA | 1..415 | 1..415 | 2266 | 100 | Plus |
CG7149-PB | 414 | CG7149-PB | 1..391 | 1..391 | 2129 | 99 | Plus |
CG33116-PA | 427 | CG33116-PA | 12..397 | 5..393 | 1012 | 48.1 | Plus |
bbc-PC | 417 | CG6016-PC | 12..375 | 7..387 | 338 | 26.9 | Plus |