Clone Sequence Records
BS09539.3prime Sequence
897 bp (841 high quality bases) assembled on 2006-04-19
> BS09539.3prime
ATGGTCTAGAAAGCTTCTAAAATATCGTATCGGTGTTGTCGTATTTGCGG
TCCCAATATCCCCCGCTGTATAACCAATCGTCGATCTTTGTATGTGGGTT
AGTTGCGTATTTAAACCACCTGGGGGACCAGTCATCGCTATTGGTGGACT
TCCTTTGTTTTCGTGTGTGCCTTTGTTTCTCCTCGAGACGGGTCTTCTCC
TTGGAGGCACCATCCAAGTTACCTTCCTCTAGGTGTAATATATCAGGTCG
CAATCGCGAATCGGTAGGGCATAGTGTCAGCGGTGGTTTCATGTTGCTAT
CCATGGCGTTAAGCTGCAGCGCAAAATGCGTAAACTGGTAGTACTCGCTA
CAGTTGGAGGGTCTGGGCTTACAGCTCCACAAGGTCGTCGAGTCGGGAAT
GTCAAGTGAGTACGCGGAGTCACTCTTCGGGATGTCGCCTTCCTGCTCCA
TAGGTGGATAGCTATCGCTGTCTTGAATGGACAGGCTGCGAAATGAGTTT
AGCTTAAAACTATTCAATTTCGAGAACATCTTCTTTGGAGTTCCGTTCGG
AGAGCCATCGTAGTCATCGTTCTTCCTGGTTCCCTGCTTCAAAAACTGGA
CGTAGGACTCGGCAGAGCAGCATTTAATGAACTCGGTCCATTTCCCGTAG
AGGAAGTATAGATTGGTTTCACTAGCATCCTTCACAAATCCCTCTACTCG
GTGCAAGTTTTTAGCTCCAGATCCGGCGGACTTGAAGGTGAGACTAGCCA
CATGGCCAGTGGCGTGGTTAGTGATCTCCATCTTTCCATACTGCTCAATC
CACAGCCTGCCCACTATTATGTTGTGTACACAGCAATTGACATTAGTCCA
ACTGTAGCTCTCGTTCCATTTTGGAAACTCGACGGTCACAGTTCCCT
BS09539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-PA | 1368 | CG3860-RA | 488..1368 | 897..17 | 4405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-RA | 2107 | CG3860-RA | 893..1775 | 897..15 | 4415 | 100 | Minus |
CG3860-RB | 2113 | CG3860-RB | 893..1781 | 897..15 | 4345 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23992633..23992860 | 118..345 | 1140 | 100 | Plus |
2R | 25286936 | 2R | 23993115..23993320 | 470..675 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 23993381..23993578 | 672..869 | 990 | 100 | Plus |
2R | 25286936 | 2R | 23992928..23993053 | 344..469 | 630 | 100 | Plus |
2R | 25286936 | 2R | 23992470..23992577 | 15..122 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:28:27 has no hits.
BS09539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:53 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-PA | 488..1368 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:50 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-PA | 488..1368 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:18 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 893..1780 | 10..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:27 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 893..1780 | 10..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:27 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23992464..23992574 | 10..119 | 98 | <- | Plus |
2R | 23992635..23992858 | 120..343 | 100 | <- | Plus |
2R | 23992928..23993053 | 344..469 | 100 | <- | Plus |
2R | 23993115..23993316 | 470..671 | 100 | <- | Plus |
2R | 23993381..23993578 | 672..869 | 100 | <- | Plus |
2R | 23993639..23993666 | 870..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:18 Download gff for
BS09539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19879987..19880097 | 10..119 | 98 | <- | Plus |
arm_2R | 19880158..19880381 | 120..343 | 100 | <- | Plus |
arm_2R | 19880451..19880576 | 344..469 | 100 | <- | Plus |
arm_2R | 19880638..19880839 | 470..671 | 100 | <- | Plus |
arm_2R | 19880904..19881101 | 672..869 | 100 | <- | Plus |
arm_2R | 19881162..19881189 | 870..897 | 100 | | Plus |
BS09539.5prime Sequence
918 bp (813 high quality bases) assembled on 2006-04-19
> BS09539.5prime
GAAGTTATCAGTCGACATGGCAGAGGGCGACTACGCAGAGCATGTGGAAA
GAACTGAGCTTCCGGCCACGATGATTTCCCGCAAGGAGGTAAGCATCTGG
GCCATTCTGAAGAACTGCATCGGCAAGGACCTGAGCAAAATCACCATGCC
GGTCATGCTGAACGAACCATTGAGCTTCCTTCAGAGGCTCTGTGAGTACA
TGGAGTACGCACAACTGCTCACCGAAGCAGCTCAGCAGGAACACCCGGCA
GATCGGATGAAATACGTGGCGGCTTTTGCCGTATCAGCATTAGCCTCCAA
CTGGGAGCGCCTGGGAAAACCTTTTAATCCTCTGCTTGGTGAAACATACG
AGCTGCAGAAGGGCGACTACCGAATCGTCTGCGAGCAGGTTTCCCACCAT
CCTCCAGTGTCTGCATTTCACGCAGAGTCCAAGGACTTCAAGTTCCACGG
CACGATTAGCCCAAAAATCAAGTTCTGGGGCAAGAGTGTTGAGGTGAATC
CGAAGGGAACTGTGACCGTCGAGTTTCCAAAATGGAACGAGAGCTACAGT
TGGACTAATGTCAATTGCTGTGTACACAACATAATAGTGGGCAGGCTGTG
GATTGAGCAGTATGGAAAGATGGAGATCACTAACCACGCCACTGGCCATG
TGGCTAGTCTCACCTTCAAGTCCGCCGGATCTGGAGCTAAAAACTTGCAC
CGAGTAGAGGGATTTGTGAAGGATGCTAGTGAAACCAATCTATACTTCCT
CTACGGGAAATGGACCGAGTTCATTAAATGCTGCTCTGCCGAGTCCTACG
TCCAGTTTTTGAAGCAGGGAACCAGGAAGAACGATGACTACGATGGCTCT
CCGAACGGAACTCCAAAGAAGATGTCTCGAAATTGATAGTTTTAAGCTAA
ACTCATTTCGCAGCCTGT
BS09539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-PA | 1368 | CG3860-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
CG3860-PA | 1368 | CG3860-RA | 872..904 | 886..918 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-RB | 2113 | CG3860-RB | 406..1309 | 17..918 | 4470 | 99.8 | Plus |
CG3860-RA | 2107 | CG3860-RA | 406..1309 | 17..918 | 4470 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23993639..23993898 | 531..272 | 1300 | 100 | Minus |
2R | 25286936 | 2R | 23994250..23994472 | 272..50 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 23993381..23993578 | 729..532 | 990 | 100 | Minus |
2R | 25286936 | 2R | 23993126..23993320 | 918..726 | 875 | 99 | Minus |
Blast to na_te.dros performed 2015-02-04 03:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 3250..3295 | 92..136 | 110 | 73.9 | Plus |
BS09539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:54 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-PA | 1..904 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:52 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-PA | 1..904 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:55 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 398..1309 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:03 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 398..1309 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:03 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23993126..23993316 | 730..918 | 98 | <- | Minus |
2R | 23993381..23993578 | 532..729 | 100 | <- | Minus |
2R | 23993639..23993897 | 273..531 | 100 | <- | Minus |
2R | 23994250..23994470 | 52..272 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:55 Download gff for
BS09539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19880649..19880839 | 730..918 | 98 | <- | Minus |
arm_2R | 19880904..19881101 | 532..729 | 100 | <- | Minus |
arm_2R | 19881162..19881420 | 273..531 | 100 | <- | Minus |
arm_2R | 19881773..19881993 | 52..272 | 100 | <- | Minus |
BS09539.complete Sequence
1400 bp (1400 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636439
> BS09539.complete
GAAGTTATCAGTCGACATGGCAGAGGGCGACTACGCAGAGCATGTGGAAA
GAACTGAGCTTCCGGCCACGATGATTTCCCGCAAGGAGGTAAGCATCTGG
GCCATTCTGAAGAACTGCATCGGCAAGGACCTGAGCAAAATCACCATGCC
GGTCATGCTGAACGAACCATTGAGCTTCCTTCAGAGGCTCTGTGAGTACA
TGGAGTACGCACAACTGCTCACCGAAGCAGCTCAGCAGGAACACCCGGCA
GATCGGATGAAATACGTGGCGGCTTTTGCCGTATCAGCATTAGCCTCCAA
CTGGGAGCGCCTGGGAAAACCTTTTAATCCTCTGCTTGGTGAAACATACG
AGCTGCAGAAGGGCGACTACCGAATCGTCTGCGAGCAGGTTTCCCACCAT
CCTCCAGTGTCTGCATTTCACGCAGAGTCCAAGGACTTCAAGTTCCACGG
CACGATTAGCCCAAAAATCAAGTTCTGGGGCAAGAGTGTTGAGGTGAATC
CGAAGGGAACTGTGACCGTCGAGTTTCCAAAATGGAACGAGAGCTACAGT
TGGACTAATGTCAATTGCTGTGTACACAACATAATAGTGGGCAGGCTGTG
GATTGAGCAGTATGGAAAGATGGAGATCACTAACCACGCCACTGGCCATG
TGGCTAGTCTCACCTTCAAGTCCGCCGGATCTGGAGCTAAAAACTTGCAC
CGAGTAGAGGGATTTGTGAAGGATGCTAGTGAAACCAATCTATACTTCCT
CTACGGGAAATGGACCGAGTTCATTAAATGCTGCTCTGCCGAGTCCTACG
TCCAGTTTTTGAAGCAGGGAACCAGGAAGAACGATGACTACGATGGCTCT
CCGAACGGAACTCCAAAGAAGATGTTCTCGAAATTGAATAGTTTTAAGCT
AAACTCATTTCGCAGCCTGTCCATTCAAGACAGCGATAGCTATCCACCTA
TGGAGCAGGAAGGCGACATCCCGAAGAGTGACTCCGCGTACTCACTTGAC
ATTCCCGACTCGACGACCTTGTGGAGCTGTAAGCCCAGACCCTCCAACTG
TAGCGAGTACTACCAGTTTACGCATTTTGCGCTGCAGCTTAACGCCATGG
ATAGCAACATGAAACCACCGCTGACACTATGCCCTACCGATTCGCGATTG
CGACCTGATATATTACACCTAGAGGAAGGTAACTTGGATGGTGCCTCCAA
GGAGAAGACCCGTCTCGAGGAGAAACAAAGGCACACACGAAAACAAAGGA
AGTCCACCAATAGCGATGACTGGTCCCCCAGGTGGTTTAAATACGCAACT
AACCCACATACAAAGATCGACGATTGGTTATACAGCGGGGGATATTGGGA
CCGCAAATACGACAACACCGATACGATATTTTAGAAGCTTTCTAGACCAT
BS09539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-RA | 1368 | CG3860-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
CG3860-RB | 1374 | CG3860-PB | 1..1374 | 17..1384 | 6745 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-RA | 2107 | CG3860-RA | 406..1775 | 17..1386 | 6850 | 100 | Plus |
CG3860-RB | 2113 | CG3860-RB | 406..1781 | 17..1386 | 6755 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23993639..23993898 | 531..272 | 1300 | 100 | Minus |
2R | 25286936 | 2R | 23992633..23992860 | 1283..1056 | 1140 | 100 | Minus |
2R | 25286936 | 2R | 23994250..23994472 | 272..50 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 23993115..23993320 | 931..726 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 23993381..23993578 | 729..532 | 990 | 100 | Minus |
2R | 25286936 | 2R | 23992928..23993053 | 1057..932 | 630 | 100 | Minus |
2R | 25286936 | 2R | 23992470..23992577 | 1386..1279 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:54:11 has no hits.
BS09539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:07 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:27 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 393..1775 | 9..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:23 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 406..1773 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:08 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 393..1775 | 9..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:46 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3860-RA | 406..1773 | 17..1384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:46 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23992928..23993053 | 932..1057 | 100 | <- | Minus |
2R | 23993115..23993316 | 730..931 | 100 | <- | Minus |
2R | 23993381..23993578 | 532..729 | 100 | <- | Minus |
2R | 23993639..23993897 | 273..531 | 100 | <- | Minus |
2R | 23994250..23994470 | 52..272 | 100 | <- | Minus |
2R | 23994533..23994567 | 17..51 | 100 | | Minus |
2R | 23992472..23992574 | 1282..1384 | 100 | <- | Minus |
2R | 23992635..23992858 | 1058..1281 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:23 Download gff for
BS09539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19880904..19881101 | 532..729 | 100 | <- | Minus |
arm_2R | 19879995..19880097 | 1282..1384 | 100 | <- | Minus |
arm_2R | 19880158..19880381 | 1058..1281 | 100 | <- | Minus |
arm_2R | 19880451..19880576 | 932..1057 | 100 | <- | Minus |
arm_2R | 19881162..19881420 | 273..531 | 100 | <- | Minus |
arm_2R | 19880638..19880839 | 730..931 | 100 | <- | Minus |
arm_2R | 19881773..19881993 | 52..272 | 100 | <- | Minus |
arm_2R | 19882056..19882090 | 17..51 | 100 | | Minus |
BS09539.pep Sequence
Translation from 16 to 1383
> BS09539.pep
MAEGDYAEHVERTELPATMISRKEVSIWAILKNCIGKDLSKITMPVMLNE
PLSFLQRLCEYMEYAQLLTEAAQQEHPADRMKYVAAFAVSALASNWERLG
KPFNPLLGETYELQKGDYRIVCEQVSHHPPVSAFHAESKDFKFHGTISPK
IKFWGKSVEVNPKGTVTVEFPKWNESYSWTNVNCCVHNIIVGRLWIEQYG
KMEITNHATGHVASLTFKSAGSGAKNLHRVEGFVKDASETNLYFLYGKWT
EFIKCCSAESYVQFLKQGTRKNDDYDGSPNGTPKKMFSKLNSFKLNSFRS
LSIQDSDSYPPMEQEGDIPKSDSAYSLDIPDSTTLWSCKPRPSNCSEYYQ
FTHFALQLNAMDSNMKPPLTLCPTDSRLRPDILHLEEGNLDGASKEKTRL
EEKQRHTRKQRKSTNSDDWSPRWFKYATNPHTKIDDWLYSGGYWDRKYDN
TDTIF*
BS09539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3860-PA | 455 | CG3860-PA | 1..455 | 1..455 | 2471 | 100 | Plus |
CG3860-PB | 457 | CG3860-PB | 1..457 | 1..455 | 2458 | 99.6 | Plus |
Osbp-PA | 784 | CG6708-PA | 398..772 | 25..447 | 624 | 36.5 | Plus |
CG42668-PD | 625 | CG5077-PD | 85..337 | 3..249 | 288 | 33.1 | Plus |
CG42668-PH | 816 | CG5077-PH | 276..528 | 3..249 | 288 | 33.1 | Plus |