Clone BS09539 Report

Search the DGRC for BS09539

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG3860-RA
Protein status:BS09539.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09539.3prime Sequence

897 bp (841 high quality bases) assembled on 2006-04-19

> BS09539.3prime
ATGGTCTAGAAAGCTTCTAAAATATCGTATCGGTGTTGTCGTATTTGCGG
TCCCAATATCCCCCGCTGTATAACCAATCGTCGATCTTTGTATGTGGGTT
AGTTGCGTATTTAAACCACCTGGGGGACCAGTCATCGCTATTGGTGGACT
TCCTTTGTTTTCGTGTGTGCCTTTGTTTCTCCTCGAGACGGGTCTTCTCC
TTGGAGGCACCATCCAAGTTACCTTCCTCTAGGTGTAATATATCAGGTCG
CAATCGCGAATCGGTAGGGCATAGTGTCAGCGGTGGTTTCATGTTGCTAT
CCATGGCGTTAAGCTGCAGCGCAAAATGCGTAAACTGGTAGTACTCGCTA
CAGTTGGAGGGTCTGGGCTTACAGCTCCACAAGGTCGTCGAGTCGGGAAT
GTCAAGTGAGTACGCGGAGTCACTCTTCGGGATGTCGCCTTCCTGCTCCA
TAGGTGGATAGCTATCGCTGTCTTGAATGGACAGGCTGCGAAATGAGTTT
AGCTTAAAACTATTCAATTTCGAGAACATCTTCTTTGGAGTTCCGTTCGG
AGAGCCATCGTAGTCATCGTTCTTCCTGGTTCCCTGCTTCAAAAACTGGA
CGTAGGACTCGGCAGAGCAGCATTTAATGAACTCGGTCCATTTCCCGTAG
AGGAAGTATAGATTGGTTTCACTAGCATCCTTCACAAATCCCTCTACTCG
GTGCAAGTTTTTAGCTCCAGATCCGGCGGACTTGAAGGTGAGACTAGCCA
CATGGCCAGTGGCGTGGTTAGTGATCTCCATCTTTCCATACTGCTCAATC
CACAGCCTGCCCACTATTATGTTGTGTACACAGCAATTGACATTAGTCCA
ACTGTAGCTCTCGTTCCATTTTGGAAACTCGACGGTCACAGTTCCCT

BS09539.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-PA 1368 CG3860-RA 488..1368 897..17 4405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-RA 2107 CG3860-RA 893..1775 897..15 4415 100 Minus
CG3860-RB 2113 CG3860-RB 893..1781 897..15 4345 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23992633..23992860 118..345 1140 100 Plus
2R 25286936 2R 23993115..23993320 470..675 1030 100 Plus
2R 25286936 2R 23993381..23993578 672..869 990 100 Plus
2R 25286936 2R 23992928..23993053 344..469 630 100 Plus
2R 25286936 2R 23992470..23992577 15..122 540 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:28:27 has no hits.

BS09539.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:53 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-PA 488..1368 17..897 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:50 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-PA 488..1368 17..897 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:18 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 893..1780 10..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:31:27 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 893..1780 10..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:31:27 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23992464..23992574 10..119 98 <- Plus
2R 23992635..23992858 120..343 100 <- Plus
2R 23992928..23993053 344..469 100 <- Plus
2R 23993115..23993316 470..671 100 <- Plus
2R 23993381..23993578 672..869 100 <- Plus
2R 23993639..23993666 870..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:18 Download gff for BS09539.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19879987..19880097 10..119 98 <- Plus
arm_2R 19880158..19880381 120..343 100 <- Plus
arm_2R 19880451..19880576 344..469 100 <- Plus
arm_2R 19880638..19880839 470..671 100 <- Plus
arm_2R 19880904..19881101 672..869 100 <- Plus
arm_2R 19881162..19881189 870..897 100   Plus

BS09539.5prime Sequence

918 bp (813 high quality bases) assembled on 2006-04-19

> BS09539.5prime
GAAGTTATCAGTCGACATGGCAGAGGGCGACTACGCAGAGCATGTGGAAA
GAACTGAGCTTCCGGCCACGATGATTTCCCGCAAGGAGGTAAGCATCTGG
GCCATTCTGAAGAACTGCATCGGCAAGGACCTGAGCAAAATCACCATGCC
GGTCATGCTGAACGAACCATTGAGCTTCCTTCAGAGGCTCTGTGAGTACA
TGGAGTACGCACAACTGCTCACCGAAGCAGCTCAGCAGGAACACCCGGCA
GATCGGATGAAATACGTGGCGGCTTTTGCCGTATCAGCATTAGCCTCCAA
CTGGGAGCGCCTGGGAAAACCTTTTAATCCTCTGCTTGGTGAAACATACG
AGCTGCAGAAGGGCGACTACCGAATCGTCTGCGAGCAGGTTTCCCACCAT
CCTCCAGTGTCTGCATTTCACGCAGAGTCCAAGGACTTCAAGTTCCACGG
CACGATTAGCCCAAAAATCAAGTTCTGGGGCAAGAGTGTTGAGGTGAATC
CGAAGGGAACTGTGACCGTCGAGTTTCCAAAATGGAACGAGAGCTACAGT
TGGACTAATGTCAATTGCTGTGTACACAACATAATAGTGGGCAGGCTGTG
GATTGAGCAGTATGGAAAGATGGAGATCACTAACCACGCCACTGGCCATG
TGGCTAGTCTCACCTTCAAGTCCGCCGGATCTGGAGCTAAAAACTTGCAC
CGAGTAGAGGGATTTGTGAAGGATGCTAGTGAAACCAATCTATACTTCCT
CTACGGGAAATGGACCGAGTTCATTAAATGCTGCTCTGCCGAGTCCTACG
TCCAGTTTTTGAAGCAGGGAACCAGGAAGAACGATGACTACGATGGCTCT
CCGAACGGAACTCCAAAGAAGATGTCTCGAAATTGATAGTTTTAAGCTAA
ACTCATTTCGCAGCCTGT

BS09539.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-PA 1368 CG3860-RA 1..859 17..875 4295 100 Plus
CG3860-PA 1368 CG3860-RA 872..904 886..918 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-RB 2113 CG3860-RB 406..1309 17..918 4470 99.8 Plus
CG3860-RA 2107 CG3860-RA 406..1309 17..918 4470 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23993639..23993898 531..272 1300 100 Minus
2R 25286936 2R 23994250..23994472 272..50 1115 100 Minus
2R 25286936 2R 23993381..23993578 729..532 990 100 Minus
2R 25286936 2R 23993126..23993320 918..726 875 99 Minus
Blast to na_te.dros performed 2015-02-04 03:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 3250..3295 92..136 110 73.9 Plus

BS09539.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:54 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-PA 1..904 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:52 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-PA 1..904 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:55 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 398..1309 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:03 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 398..1309 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:03 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23993126..23993316 730..918 98 <- Minus
2R 23993381..23993578 532..729 100 <- Minus
2R 23993639..23993897 273..531 100 <- Minus
2R 23994250..23994470 52..272 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:55 Download gff for BS09539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19880649..19880839 730..918 98 <- Minus
arm_2R 19880904..19881101 532..729 100 <- Minus
arm_2R 19881162..19881420 273..531 100 <- Minus
arm_2R 19881773..19881993 52..272 100 <- Minus

BS09539.complete Sequence

1400 bp (1400 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636439

> BS09539.complete
GAAGTTATCAGTCGACATGGCAGAGGGCGACTACGCAGAGCATGTGGAAA
GAACTGAGCTTCCGGCCACGATGATTTCCCGCAAGGAGGTAAGCATCTGG
GCCATTCTGAAGAACTGCATCGGCAAGGACCTGAGCAAAATCACCATGCC
GGTCATGCTGAACGAACCATTGAGCTTCCTTCAGAGGCTCTGTGAGTACA
TGGAGTACGCACAACTGCTCACCGAAGCAGCTCAGCAGGAACACCCGGCA
GATCGGATGAAATACGTGGCGGCTTTTGCCGTATCAGCATTAGCCTCCAA
CTGGGAGCGCCTGGGAAAACCTTTTAATCCTCTGCTTGGTGAAACATACG
AGCTGCAGAAGGGCGACTACCGAATCGTCTGCGAGCAGGTTTCCCACCAT
CCTCCAGTGTCTGCATTTCACGCAGAGTCCAAGGACTTCAAGTTCCACGG
CACGATTAGCCCAAAAATCAAGTTCTGGGGCAAGAGTGTTGAGGTGAATC
CGAAGGGAACTGTGACCGTCGAGTTTCCAAAATGGAACGAGAGCTACAGT
TGGACTAATGTCAATTGCTGTGTACACAACATAATAGTGGGCAGGCTGTG
GATTGAGCAGTATGGAAAGATGGAGATCACTAACCACGCCACTGGCCATG
TGGCTAGTCTCACCTTCAAGTCCGCCGGATCTGGAGCTAAAAACTTGCAC
CGAGTAGAGGGATTTGTGAAGGATGCTAGTGAAACCAATCTATACTTCCT
CTACGGGAAATGGACCGAGTTCATTAAATGCTGCTCTGCCGAGTCCTACG
TCCAGTTTTTGAAGCAGGGAACCAGGAAGAACGATGACTACGATGGCTCT
CCGAACGGAACTCCAAAGAAGATGTTCTCGAAATTGAATAGTTTTAAGCT
AAACTCATTTCGCAGCCTGTCCATTCAAGACAGCGATAGCTATCCACCTA
TGGAGCAGGAAGGCGACATCCCGAAGAGTGACTCCGCGTACTCACTTGAC
ATTCCCGACTCGACGACCTTGTGGAGCTGTAAGCCCAGACCCTCCAACTG
TAGCGAGTACTACCAGTTTACGCATTTTGCGCTGCAGCTTAACGCCATGG
ATAGCAACATGAAACCACCGCTGACACTATGCCCTACCGATTCGCGATTG
CGACCTGATATATTACACCTAGAGGAAGGTAACTTGGATGGTGCCTCCAA
GGAGAAGACCCGTCTCGAGGAGAAACAAAGGCACACACGAAAACAAAGGA
AGTCCACCAATAGCGATGACTGGTCCCCCAGGTGGTTTAAATACGCAACT
AACCCACATACAAAGATCGACGATTGGTTATACAGCGGGGGATATTGGGA
CCGCAAATACGACAACACCGATACGATATTTTAGAAGCTTTCTAGACCAT

BS09539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-RA 1368 CG3860-PA 1..1368 17..1384 6840 100 Plus
CG3860-RB 1374 CG3860-PB 1..1374 17..1384 6745 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-RA 2107 CG3860-RA 406..1775 17..1386 6850 100 Plus
CG3860-RB 2113 CG3860-RB 406..1781 17..1386 6755 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23993639..23993898 531..272 1300 100 Minus
2R 25286936 2R 23992633..23992860 1283..1056 1140 100 Minus
2R 25286936 2R 23994250..23994472 272..50 1115 100 Minus
2R 25286936 2R 23993115..23993320 931..726 1030 100 Minus
2R 25286936 2R 23993381..23993578 729..532 990 100 Minus
2R 25286936 2R 23992928..23993053 1057..932 630 100 Minus
2R 25286936 2R 23992470..23992577 1386..1279 540 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:54:11 has no hits.

BS09539.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:07 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:27 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 393..1775 9..1391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:23 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 406..1773 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:08 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 393..1775 9..1391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:46 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
CG3860-RA 406..1773 17..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:46 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23992928..23993053 932..1057 100 <- Minus
2R 23993115..23993316 730..931 100 <- Minus
2R 23993381..23993578 532..729 100 <- Minus
2R 23993639..23993897 273..531 100 <- Minus
2R 23994250..23994470 52..272 100 <- Minus
2R 23994533..23994567 17..51 100   Minus
2R 23992472..23992574 1282..1384 100 <- Minus
2R 23992635..23992858 1058..1281 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:23 Download gff for BS09539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19880904..19881101 532..729 100 <- Minus
arm_2R 19879995..19880097 1282..1384 100 <- Minus
arm_2R 19880158..19880381 1058..1281 100 <- Minus
arm_2R 19880451..19880576 932..1057 100 <- Minus
arm_2R 19881162..19881420 273..531 100 <- Minus
arm_2R 19880638..19880839 730..931 100 <- Minus
arm_2R 19881773..19881993 52..272 100 <- Minus
arm_2R 19882056..19882090 17..51 100   Minus

BS09539.pep Sequence

Translation from 16 to 1383

> BS09539.pep
MAEGDYAEHVERTELPATMISRKEVSIWAILKNCIGKDLSKITMPVMLNE
PLSFLQRLCEYMEYAQLLTEAAQQEHPADRMKYVAAFAVSALASNWERLG
KPFNPLLGETYELQKGDYRIVCEQVSHHPPVSAFHAESKDFKFHGTISPK
IKFWGKSVEVNPKGTVTVEFPKWNESYSWTNVNCCVHNIIVGRLWIEQYG
KMEITNHATGHVASLTFKSAGSGAKNLHRVEGFVKDASETNLYFLYGKWT
EFIKCCSAESYVQFLKQGTRKNDDYDGSPNGTPKKMFSKLNSFKLNSFRS
LSIQDSDSYPPMEQEGDIPKSDSAYSLDIPDSTTLWSCKPRPSNCSEYYQ
FTHFALQLNAMDSNMKPPLTLCPTDSRLRPDILHLEEGNLDGASKEKTRL
EEKQRHTRKQRKSTNSDDWSPRWFKYATNPHTKIDDWLYSGGYWDRKYDN
TDTIF*

BS09539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3860-PA 455 CG3860-PA 1..455 1..455 2471 100 Plus
CG3860-PB 457 CG3860-PB 1..457 1..455 2458 99.6 Plus
Osbp-PA 784 CG6708-PA 398..772 25..447 624 36.5 Plus
CG42668-PD 625 CG5077-PD 85..337 3..249 288 33.1 Plus
CG42668-PH 816 CG5077-PH 276..528 3..249 288 33.1 Plus