Clone Sequence Records
BS09540.3prime Sequence
853 bp (851 high quality bases) assembled on 2006-04-19
> BS09540.3prime
ATGGTCTAGAAAGCTTCTACTGCACCCACATGGATGGTGCCCATACCGGT
TCGTTCTCCAGTCGCTGGACATTCTGGACCAGCTGCTCGAAAGCATTGAC
CAGTTCGCCGTTGACCAGCTCTACGTCGAAGAAGTGTCCGTATAGGAAAT
CTATGCGTTCGGCCGACTTGATCATGTCCTCGAACTCTTCGTCCGTAAAA
CTTCTGGCATTCGCCTCGTCGAATGTGGATTTGGCACGCGCCTCCGTTCG
CGTAGCCTTCAGGATGTCCAACTCTGGTGGCTTCACATGGATGAGGAAGG
GCTTCAGCTGAGCTGTGCGCAGAGTCTTGATCGCCTGGTAGTGCGGACTC
AGCACACATACGCAGCCGGCATTCACAATCGACTTGACACTCTCCGCCGA
TGTTCCGTACAAATGGCCCTTGTACTCGCCGTGCTCCACAAACTTTCCCG
CCTCGATGTCCGCGTCCATTTTCTCGCGGGCCACAAAGATGTACTCTCGT
CCGGCCACTTCACCTGTGCGCATTGGTCGGGTGGTGTACGGAACCGGACT
GCGGAACTTCTCGGGATCCCGGGCTATCAGCCGGCGGCGCAATTCATTCC
GCCCCACGCCGGGTGCTCCGATGAGCACTATGGGCCTGAAGACTCCGGGC
CGTGGATACAACTTGGCCACCTCCTCGTACGTGGCGATCTGCTCGCGGTC
AAAGTCGTCGTTCTGCTTCGAGTCCAGATCGGTGCCGTTCTTCTGTGTAC
GGTCGTGGAGGATACGGCGCTCCTGCAGCGCCCGGCTGGGAATCAAACCG
GCTCTTGCCGAGCGCTCGTGCTCCTTGCGCGCCTGCCACCAGTAGGCATC
GTC
BS09540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30021-PA | 1671 | skf-RA | 835..1671 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metro-RD | 2635 | CG30021-RD | 1234..2071 | 853..16 | 4190 | 100 | Minus |
metro-RB | 2665 | CG30021-RB | 1264..2101 | 853..16 | 4190 | 100 | Minus |
metro-RC | 2752 | CG30021-RC | 1490..2188 | 714..16 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11227022..11227543 | 16..537 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 11227663..11227839 | 538..714 | 885 | 100 | Plus |
2R | 25286936 | 2R | 11228116..11228254 | 715..853 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:30:15 has no hits.
BS09540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:56 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skf-PA | 835..1671 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:54 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30021-PA | 835..1671 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:36 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RB | 1264..2101 | 16..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:44 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RB | 1264..2101 | 16..853 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:44 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11227022..11227543 | 16..537 | 100 | <- | Plus |
2R | 11227663..11227839 | 538..714 | 100 | <- | Plus |
2R | 11228116..11228254 | 715..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:36 Download gff for
BS09540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7114527..7115048 | 16..537 | 100 | <- | Plus |
arm_2R | 7115168..7115344 | 538..714 | 100 | <- | Plus |
arm_2R | 7115621..7115759 | 715..853 | 100 | | Plus |
BS09540.5prime Sequence
874 bp (810 high quality bases) assembled on 2006-04-19
> BS09540.5prime
GAAGTTATCAGTCGACATGCTAGAAGCAGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCG
BS09540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30021-PA | 1671 | skf-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metro-RB | 2665 | CG30021-RB | 427..1287 | 14..874 | 4305 | 100 | Plus |
metro-RA | 2782 | CG30021-RA | 427..1287 | 14..874 | 4305 | 100 | Plus |
metro-RD | 2635 | CG30021-RD | 427..882 | 14..469 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11229599..11229877 | 337..59 | 1395 | 100 | Minus |
2R | 25286936 | 2R | 11228231..11228438 | 874..667 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 11228509..11228676 | 667..500 | 840 | 100 | Minus |
2R | 25286936 | 2R | 11229411..11229545 | 469..335 | 675 | 100 | Minus |
2R | 25286936 | 2R | 11229940..11229985 | 59..14 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:24:21 has no hits.
BS09540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:57 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skf-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:56 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30021-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:01 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RA | 420..1287 | 4..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:02 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RA | 420..1287 | 4..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:02 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11228231..11228437 | 668..874 | 100 | <- | Minus |
2R | 11228509..11228676 | 500..667 | 100 | <- | Minus |
2R | 11229004..11229033 | 470..499 | 100 | <- | Minus |
2R | 11229411..11229542 | 338..469 | 100 | <- | Minus |
2R | 11229599..11229876 | 60..337 | 100 | <- | Minus |
2R | 11229940..11229992 | 4..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:01 Download gff for
BS09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7115736..7115942 | 668..874 | 100 | <- | Minus |
arm_2R | 7116014..7116181 | 500..667 | 100 | <- | Minus |
arm_2R | 7116509..7116538 | 470..499 | 100 | <- | Minus |
arm_2R | 7116916..7117047 | 338..469 | 100 | <- | Minus |
arm_2R | 7117104..7117381 | 60..337 | 100 | <- | Minus |
arm_2R | 7117445..7117497 | 4..59 | 92 | | Minus |
BS09540.complete Sequence
1703 bp assembled on 2007-10-17
GenBank Submission: FJ636440
> BS09540.complete
GAAGTTATCAGTCGACATGCTAGAAGCAGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCGCGCAAGGAGCACGAGCGCTCGGCAAG
AGCCGGTTTGATTCCCAGCCGGGCGCTGCAGGAGCGCCGTATCCTCCACG
ACCGTACACAGAAGAACGGCACCGATCTGGACTCGAAGCAGAACGACGAC
TTTGACCGCGAGCAGATCGCCACGTACGAGGAGGTGGCCAAGTTGTATCC
ACGGCCCGGAGTCTTCAGGCCCATAGTGCTCATCGGAGCACCCGGCGTGG
GGCGGAATGAATTGCGCCGCCGGCTGATAGCCCGGGATCCCGAGAAGTTC
CGCAGTCCGGTTCCGTACACCACCCGACCAATGCGCACAGGTGAAGTGGC
CGGACGAGAGTACATCTTTGTGGCCCGCGAGAAAATGGACGCGGACATCG
AGGCGGGAAAGTTTGTGGAGCACGGCGAGTACAAGGGCCATTTGTACGGA
ACATCGGCGGAGAGTGTCAAGTCGATTGTGAATGCCGGCTGCGTATGTGT
GCTGAGTCCGCACTACCAGGCGATCAAGACTCTGCGCACAGCTCAGCTGA
AGCCCTTCCTCATCCATGTGAAGCCACCAGAGTTGGACATCCTGAAGGCT
ACGCGAACGGAGGCGCGTGCCAAATCCACATTCGACGAGGCGAATGCCAG
AAGTTTTACGGACGAAGAGTTCGAGGACATGATCAAGTCGGCCGAACGCA
TAGATTTCCTATACGGACACTTCTTCGACGTAGAGCTGGTCAACGGCGAA
CTGGTCAATGCTTTCGAGCAGCTGGTCCAGAATGTCCAGCGACTGGAGAA
CGAACCGGTATGGGCACCATCCATGTGGGTGCAGTAGAAGCTTTCTAGAC
CAT
BS09540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metro-RB | 1671 | CG30021-PB | 1..1671 | 17..1687 | 8355 | 100 | Plus |
metro-RD | 1641 | CG30021-PD | 454..1641 | 500..1687 | 5940 | 100 | Plus |
metro-RA | 1788 | CG30021-PA | 1..973 | 17..989 | 4865 | 100 | Plus |
metro-RD | 1641 | CG30021-PD | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metro-RB | 2665 | CG30021-RB | 427..2101 | 14..1688 | 8375 | 100 | Plus |
metro-RD | 2635 | CG30021-RD | 883..2071 | 500..1688 | 5945 | 100 | Plus |
metro-RA | 2782 | CG30021-RA | 427..1402 | 14..989 | 4880 | 100 | Plus |
metro-RD | 2635 | CG30021-RD | 427..882 | 14..469 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11227022..11227543 | 1688..1167 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 11228116..11228438 | 989..667 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 11229599..11229877 | 337..59 | 1395 | 100 | Minus |
2R | 25286936 | 2R | 11227663..11227839 | 1166..990 | 885 | 100 | Minus |
2R | 25286936 | 2R | 11228509..11228676 | 667..500 | 840 | 100 | Minus |
2R | 25286936 | 2R | 11229411..11229545 | 469..335 | 675 | 100 | Minus |
2R | 25286936 | 2R | 11229940..11229985 | 59..14 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:21:47 has no hits.
BS09540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:20 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skf-RB | 1..1671 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:23 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skf-RB | 455..2136 | 4..1688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:45 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RB | 430..2100 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:28 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skf-RB | 465..2135 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:06 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metro-RB | 430..2100 | 17..1687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:06 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11229599..11229876 | 60..337 | 100 | <- | Minus |
2R | 11229940..11229982 | 17..59 | 100 | | Minus |
2R | 11228509..11228676 | 500..667 | 100 | <- | Minus |
2R | 11229004..11229033 | 470..499 | 100 | <- | Minus |
2R | 11229411..11229542 | 338..469 | 100 | <- | Minus |
2R | 11227023..11227543 | 1167..1687 | 100 | <- | Minus |
2R | 11227663..11227839 | 990..1166 | 100 | <- | Minus |
2R | 11228116..11228437 | 668..989 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:45 Download gff for
BS09540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7114528..7115048 | 1167..1687 | 100 | <- | Minus |
arm_2R | 7115168..7115344 | 990..1166 | 100 | <- | Minus |
arm_2R | 7115621..7115942 | 668..989 | 100 | <- | Minus |
arm_2R | 7116014..7116181 | 500..667 | 100 | <- | Minus |
arm_2R | 7116509..7116538 | 470..499 | 100 | <- | Minus |
arm_2R | 7116916..7117047 | 338..469 | 100 | <- | Minus |
arm_2R | 7117104..7117381 | 60..337 | 100 | <- | Minus |
arm_2R | 7117445..7117487 | 17..59 | 100 | | Minus |
BS09540.pep Sequence
Translation from 16 to 1686
> BS09540.pep
MLEAVMASDINWDPALSKLISTLKESENLSNDQEIDFLKALLESKELNAL
VNVHTKVAKVGRDDRLAPVLSTSAQVLYEVLEQLSQHCHLNDDCKEAFHL
LQDSHLQHLLFAHDAIAQKDFYPHLPEAPVEMDEDEETIKIVQLVKSNEP
LTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEV
NNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDY
NPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIP
SRALQERRILHDRTQKNGTDLDSKQNDDFDREQIATYEEVAKLYPRPGVF
RPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYI
FVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHY
QAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDE
EFEDMIKSAERIDFLYGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWA
PSMWVQ*
BS09540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metro-PB | 556 | CG30021-PB | 1..556 | 1..556 | 2874 | 100 | Plus |
metro-PA | 595 | CG30021-PA | 1..595 | 1..556 | 2821 | 93.3 | Plus |
metro-PD | 546 | CG30021-PD | 1..546 | 1..556 | 2804 | 98.2 | Plus |
metro-PC | 585 | CG30021-PC | 1..585 | 1..556 | 2751 | 91.6 | Plus |
CASK-PB | 898 | CG6703-PB | 346..897 | 15..555 | 715 | 31.9 | Plus |