Clone BS09540 Report

Search the DGRC for BS09540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptmetro-RB
Protein status:BS09540.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09540.3prime Sequence

853 bp (851 high quality bases) assembled on 2006-04-19

> BS09540.3prime
ATGGTCTAGAAAGCTTCTACTGCACCCACATGGATGGTGCCCATACCGGT
TCGTTCTCCAGTCGCTGGACATTCTGGACCAGCTGCTCGAAAGCATTGAC
CAGTTCGCCGTTGACCAGCTCTACGTCGAAGAAGTGTCCGTATAGGAAAT
CTATGCGTTCGGCCGACTTGATCATGTCCTCGAACTCTTCGTCCGTAAAA
CTTCTGGCATTCGCCTCGTCGAATGTGGATTTGGCACGCGCCTCCGTTCG
CGTAGCCTTCAGGATGTCCAACTCTGGTGGCTTCACATGGATGAGGAAGG
GCTTCAGCTGAGCTGTGCGCAGAGTCTTGATCGCCTGGTAGTGCGGACTC
AGCACACATACGCAGCCGGCATTCACAATCGACTTGACACTCTCCGCCGA
TGTTCCGTACAAATGGCCCTTGTACTCGCCGTGCTCCACAAACTTTCCCG
CCTCGATGTCCGCGTCCATTTTCTCGCGGGCCACAAAGATGTACTCTCGT
CCGGCCACTTCACCTGTGCGCATTGGTCGGGTGGTGTACGGAACCGGACT
GCGGAACTTCTCGGGATCCCGGGCTATCAGCCGGCGGCGCAATTCATTCC
GCCCCACGCCGGGTGCTCCGATGAGCACTATGGGCCTGAAGACTCCGGGC
CGTGGATACAACTTGGCCACCTCCTCGTACGTGGCGATCTGCTCGCGGTC
AAAGTCGTCGTTCTGCTTCGAGTCCAGATCGGTGCCGTTCTTCTGTGTAC
GGTCGTGGAGGATACGGCGCTCCTGCAGCGCCCGGCTGGGAATCAAACCG
GCTCTTGCCGAGCGCTCGTGCTCCTTGCGCGCCTGCCACCAGTAGGCATC
GTC

BS09540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30021-PA 1671 skf-RA 835..1671 853..17 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
metro-RD 2635 CG30021-RD 1234..2071 853..16 4190 100 Minus
metro-RB 2665 CG30021-RB 1264..2101 853..16 4190 100 Minus
metro-RC 2752 CG30021-RC 1490..2188 714..16 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11227022..11227543 16..537 2610 100 Plus
2R 25286936 2R 11227663..11227839 538..714 885 100 Plus
2R 25286936 2R 11228116..11228254 715..853 695 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:30:15 has no hits.

BS09540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:56 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
skf-PA 835..1671 17..853 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:54 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30021-PA 835..1671 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:36 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
metro-RB 1264..2101 16..853 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:44 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
metro-RB 1264..2101 16..853 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:44 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11227022..11227543 16..537 100 <- Plus
2R 11227663..11227839 538..714 100 <- Plus
2R 11228116..11228254 715..853 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:36 Download gff for BS09540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7114527..7115048 16..537 100 <- Plus
arm_2R 7115168..7115344 538..714 100 <- Plus
arm_2R 7115621..7115759 715..853 100   Plus

BS09540.5prime Sequence

874 bp (810 high quality bases) assembled on 2006-04-19

> BS09540.5prime
GAAGTTATCAGTCGACATGCTAGAAGCAGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCG

BS09540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30021-PA 1671 skf-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
metro-RB 2665 CG30021-RB 427..1287 14..874 4305 100 Plus
metro-RA 2782 CG30021-RA 427..1287 14..874 4305 100 Plus
metro-RD 2635 CG30021-RD 427..882 14..469 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11229599..11229877 337..59 1395 100 Minus
2R 25286936 2R 11228231..11228438 874..667 1040 100 Minus
2R 25286936 2R 11228509..11228676 667..500 840 100 Minus
2R 25286936 2R 11229411..11229545 469..335 675 100 Minus
2R 25286936 2R 11229940..11229985 59..14 230 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:24:21 has no hits.

BS09540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:12:57 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
skf-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:23:56 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30021-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:01 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
metro-RA 420..1287 4..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:02 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
metro-RA 420..1287 4..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:02 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11228231..11228437 668..874 100 <- Minus
2R 11228509..11228676 500..667 100 <- Minus
2R 11229004..11229033 470..499 100 <- Minus
2R 11229411..11229542 338..469 100 <- Minus
2R 11229599..11229876 60..337 100 <- Minus
2R 11229940..11229992 4..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:01 Download gff for BS09540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7115736..7115942 668..874 100 <- Minus
arm_2R 7116014..7116181 500..667 100 <- Minus
arm_2R 7116509..7116538 470..499 100 <- Minus
arm_2R 7116916..7117047 338..469 100 <- Minus
arm_2R 7117104..7117381 60..337 100 <- Minus
arm_2R 7117445..7117497 4..59 92   Minus

BS09540.complete Sequence

1703 bp assembled on 2007-10-17

GenBank Submission: FJ636440

> BS09540.complete
GAAGTTATCAGTCGACATGCTAGAAGCAGTTATGGCATCGGACATCAACT
GGGATCCTGCTCTTTCCAAGCTGATCAGCACGCTCAAGGAGTCGGAGAAT
CTATCCAATGACCAGGAAATCGACTTCCTGAAGGCCTTGCTTGAATCCAA
GGAACTAAACGCGCTGGTCAATGTCCACACGAAGGTGGCCAAAGTGGGTC
GAGATGATCGTCTGGCCCCGGTGCTCTCCACCTCTGCCCAGGTGTTGTAC
GAAGTCCTGGAGCAGCTGTCCCAGCATTGTCATCTGAACGATGACTGCAA
GGAGGCCTTTCACCTGCTGCAGGACTCTCACCTGCAGCACCTTCTGTTCG
CCCACGATGCGATTGCCCAGAAGGACTTCTACCCGCACCTGCCGGAGGCG
CCTGTCGAAATGGACGAGGACGAGGAGACCATCAAGATTGTGCAGCTCGT
CAAGAGCAACGAGCCCCTGACAGGAGCACAGAGTACGGAGCCAATTGTTG
GCGCCACCATTAAAACGGACGAGGAGTCGGGCAAGATAATCATCGCCAGA
ATTATGCACGGCGGCGCTGCAGATCGCTCCGGATTGATTCACGTCGGCGA
CGAGGTCATCGAGGTCAACAACATCAACGTGGAGGGCAAGACGCCGGGCG
ATGTGCTCACCATACTGCAAAACTCGGAGGGCACCATTACCTTTAAGCTG
GTTCCCGCGGACAACAAGGGCGCCCAGCGCGAGTCCAAAGTGCGGGTGAG
GGCCCACTTTGACTACAATCCGGATGTGGATCCCTACATTCCGTGCAAGG
AGGCGGGTCTGGCCTTCCAGCGCGGCGATGTGTTGCACATTGTGGCCCAA
GACGATGCCTACTGGTGGCAGGCGCGCAAGGAGCACGAGCGCTCGGCAAG
AGCCGGTTTGATTCCCAGCCGGGCGCTGCAGGAGCGCCGTATCCTCCACG
ACCGTACACAGAAGAACGGCACCGATCTGGACTCGAAGCAGAACGACGAC
TTTGACCGCGAGCAGATCGCCACGTACGAGGAGGTGGCCAAGTTGTATCC
ACGGCCCGGAGTCTTCAGGCCCATAGTGCTCATCGGAGCACCCGGCGTGG
GGCGGAATGAATTGCGCCGCCGGCTGATAGCCCGGGATCCCGAGAAGTTC
CGCAGTCCGGTTCCGTACACCACCCGACCAATGCGCACAGGTGAAGTGGC
CGGACGAGAGTACATCTTTGTGGCCCGCGAGAAAATGGACGCGGACATCG
AGGCGGGAAAGTTTGTGGAGCACGGCGAGTACAAGGGCCATTTGTACGGA
ACATCGGCGGAGAGTGTCAAGTCGATTGTGAATGCCGGCTGCGTATGTGT
GCTGAGTCCGCACTACCAGGCGATCAAGACTCTGCGCACAGCTCAGCTGA
AGCCCTTCCTCATCCATGTGAAGCCACCAGAGTTGGACATCCTGAAGGCT
ACGCGAACGGAGGCGCGTGCCAAATCCACATTCGACGAGGCGAATGCCAG
AAGTTTTACGGACGAAGAGTTCGAGGACATGATCAAGTCGGCCGAACGCA
TAGATTTCCTATACGGACACTTCTTCGACGTAGAGCTGGTCAACGGCGAA
CTGGTCAATGCTTTCGAGCAGCTGGTCCAGAATGTCCAGCGACTGGAGAA
CGAACCGGTATGGGCACCATCCATGTGGGTGCAGTAGAAGCTTTCTAGAC
CAT

BS09540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
metro-RB 1671 CG30021-PB 1..1671 17..1687 8355 100 Plus
metro-RD 1641 CG30021-PD 454..1641 500..1687 5940 100 Plus
metro-RA 1788 CG30021-PA 1..973 17..989 4865 100 Plus
metro-RD 1641 CG30021-PD 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
metro-RB 2665 CG30021-RB 427..2101 14..1688 8375 100 Plus
metro-RD 2635 CG30021-RD 883..2071 500..1688 5945 100 Plus
metro-RA 2782 CG30021-RA 427..1402 14..989 4880 100 Plus
metro-RD 2635 CG30021-RD 427..882 14..469 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11227022..11227543 1688..1167 2610 100 Minus
2R 25286936 2R 11228116..11228438 989..667 1615 100 Minus
2R 25286936 2R 11229599..11229877 337..59 1395 100 Minus
2R 25286936 2R 11227663..11227839 1166..990 885 100 Minus
2R 25286936 2R 11228509..11228676 667..500 840 100 Minus
2R 25286936 2R 11229411..11229545 469..335 675 100 Minus
2R 25286936 2R 11229940..11229985 59..14 230 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:21:47 has no hits.

BS09540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:20 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
skf-RB 1..1671 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:23 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
skf-RB 455..2136 4..1688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:45 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
metro-RB 430..2100 17..1687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:28 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
skf-RB 465..2135 17..1687 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:06 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
metro-RB 430..2100 17..1687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:06 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11229599..11229876 60..337 100 <- Minus
2R 11229940..11229982 17..59 100   Minus
2R 11228509..11228676 500..667 100 <- Minus
2R 11229004..11229033 470..499 100 <- Minus
2R 11229411..11229542 338..469 100 <- Minus
2R 11227023..11227543 1167..1687 100 <- Minus
2R 11227663..11227839 990..1166 100 <- Minus
2R 11228116..11228437 668..989 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:45 Download gff for BS09540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7114528..7115048 1167..1687 100 <- Minus
arm_2R 7115168..7115344 990..1166 100 <- Minus
arm_2R 7115621..7115942 668..989 100 <- Minus
arm_2R 7116014..7116181 500..667 100 <- Minus
arm_2R 7116509..7116538 470..499 100 <- Minus
arm_2R 7116916..7117047 338..469 100 <- Minus
arm_2R 7117104..7117381 60..337 100 <- Minus
arm_2R 7117445..7117487 17..59 100   Minus

BS09540.pep Sequence

Translation from 16 to 1686

> BS09540.pep
MLEAVMASDINWDPALSKLISTLKESENLSNDQEIDFLKALLESKELNAL
VNVHTKVAKVGRDDRLAPVLSTSAQVLYEVLEQLSQHCHLNDDCKEAFHL
LQDSHLQHLLFAHDAIAQKDFYPHLPEAPVEMDEDEETIKIVQLVKSNEP
LTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEV
NNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDY
NPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIP
SRALQERRILHDRTQKNGTDLDSKQNDDFDREQIATYEEVAKLYPRPGVF
RPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYI
FVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHY
QAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDE
EFEDMIKSAERIDFLYGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWA
PSMWVQ*

BS09540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
metro-PB 556 CG30021-PB 1..556 1..556 2874 100 Plus
metro-PA 595 CG30021-PA 1..595 1..556 2821 93.3 Plus
metro-PD 546 CG30021-PD 1..546 1..556 2804 98.2 Plus
metro-PC 585 CG30021-PC 1..585 1..556 2751 91.6 Plus
CASK-PB 898 CG6703-PB 346..897 15..555 715 31.9 Plus