Clone Sequence Records
BS09546.3prime Sequence
890 bp (774 high quality bases) assembled on 2006-04-19
> BS09546.3prime
ATGGTCTAGAAAGCTTTTATAGACGATATTTGATGGCTCGCAGAATGGGA
TACTTATCGCCTGAGCACTGTCCACGGAAATCATCGTAGCTCAGATCGAA
CAGCGCCACGCCCCCTAGGTTCTTGACACGGGCATAGGCTGCCTTATTGG
AGGCGGAGTCGGGATCATCGTAGCTCACCCAAATGCCCTCGGTTATCTGA
CCATCCACTGGGCGATAAGCTATGCCTCCGAATCTCTTGGTGGGATCAGA
AACTCTTCGCAGTGGCGATTCGTTGCCCTTGAGGAATTGATTTTGGGGAT
TGGACAACTTTCCGCAGATTTCAGCATAGCTTAGTAATCCAGGCTTTTGG
GACTGGAAGCCCTCGGGTGCTGGTCCACTTGTCTCCGGCACAACAGGAAC
TCCTTCGAGACCCGAGTCCTTGGTAAGTTTCCATGCATTACCATAGGTGG
CAACTCCCAAATTGATCTTATTGGATGGGAATCCCTGAGATAGCCAGTAC
TCCACCTGGAAATCAGCGTTAAGGTGTGCCAACCTATCCTTCGATCCATC
GGGATGGTAGATGGGAGCACTGTAGTCCGCCTCCTCGGGATTACGGGCTG
GTGTCAGGAAATCGAAGGTAGCCAGGTTCACAAAGTCCACCAGGCCATTC
AGAGCGGGAATATCAAAGTACCATGTTGAGTTTACATTGGGCAGCACAGT
CAGACTGAGCAGAAATCCATCAGCTCTCAAGGAGTCCTTTACATCCCTTA
CTAAAGCGGTAAACTGCTCCTTATGAAGGGCTGCGTGTGGATCCACTATG
AAATCGCCGGTGAACAGCTTCTTAATACTCTTCCATGCCAGTCCAAGATC
ACCGTGAACCTTTCTTGGCTTATTCTTTGGGAACTGATAG
BS09546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4475-PA | 1323 | Idgf2-RA | 450..1323 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf2-RB | 1796 | CG4475-RB | 873..1748 | 890..15 | 4380 | 100 | Minus |
Idgf2-RC | 1367 | CG4475-RC | 444..1319 | 890..15 | 4380 | 100 | Minus |
Idgf2-RA | 1440 | CG4475-RA | 517..1392 | 890..15 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16449803..16450460 | 672..15 | 3290 | 100 | Minus |
2L | 23513712 | 2L | 16449526..16449744 | 890..672 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 16452688..16452839 | 175..24 | 220 | 76.3 | Minus |
2R | 25286936 | 2R | 16693462..16693628 | 187..21 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:23:26 has no hits.
BS09546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:05 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-PA | 450..1323 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:07 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4475-PA | 450..1323 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:14:25 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 517..1392 | 15..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:23:12 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 517..1392 | 15..890 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:23:12 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16449526..16449743 | 673..890 | 100 | -> | Minus |
2L | 16449803..16450460 | 15..672 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:14:25 Download gff for
BS09546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16449526..16449743 | 673..890 | 100 | -> | Minus |
arm_2L | 16449803..16450460 | 15..672 | 100 | | Minus |
BS09546.5prime Sequence
925 bp (770 high quality bases) assembled on 2006-04-19
> BS09546.5prime
GAAGTTATCAGTCGACATGAAGGCGTGGATCTGGTTTACGTTTGTCGCGT
GCCTCTTTGCGGCAAGTACAGAAGCTGCCTCCAACTTAGTCTGCTACTAT
GACTCTTCGAGTTACACCAGGGAAGGTCTGGGCAAGCTGCTCAATCCCGA
TCTGGAGATCGCCTTGCAATTCTGCAGCCACTTGGTCTACGGCTATGCTG
GGCTGAGAGGTGAAAACCTACAGGCGTACAGTATGAACGAGAACCTGGAC
ATATACAAGCATCAGTTCTCCGAGGTTACCTCCCTCAAGAGGAAGTATCC
CCACCTGAAAGTTTTGTTGAGTGTGGGCGGCGATCATGACATCGACCCTG
ATCATCCCAACAAGTATATCGATCTGCTGGAGGGCGAGAAGGTTCGTCAA
ATTGGTTTCATCCGATCGGCCTATGACTTGGTTAAGACCTACGGCTTTGA
TGGCTTGGATCTGGCCTATCAGTTCCCAAAGAATAAGCCAAGAAAGGTTC
ACGGTGATCTTGGACTGGCATGGAAGAGTATTAAGAAGCTGTTCACCGGC
GATTTCATAGTGGATCCACACGCAGCCCTTCATAAGGAGCAGTTTACCGC
TTTAGTAAGGGATGTAAAGGACTCCTTGAGAGCTGATGGATTTCTGCTCA
GTCTGACTGTGCTGCCCAATGTAAACTCAACATGGTACTTTGATATTCCC
GCTCTGAATGGCCTGGTGGACTTTGTGAACCTGGCTACCTTCGATTTCCT
GACACCAGCCCGTAATCCCGAGGAGGCGGACTACAGTGCTCCCATCTACC
ATCCCGATGGATCGAAGGATAGGTTGGCACACCTTAACGCTGATTTCCAG
GTGGAGTACTGGCTATCTCAGGGATTCCATCCAATAAGATCAATTTGGGA
GTTGCCACCTATGGTAATGCATGGA
BS09546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4475-PA | 1323 | Idgf2-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
CG4475-PA | 1323 | Idgf2-RA | 862..910 | 877..925 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf2-RA | 1440 | CG4475-RA | 67..977 | 16..925 | 4530 | 99.9 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 531..1333 | 124..925 | 3990 | 99.9 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 104..904 | 126..925 | 3980 | 99.9 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 67..180 | 16..129 | 555 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16449184..16449744 | 124..684 | 2805 | 100 | Plus |
2L | 23513712 | 2L | 16449803..16450045 | 684..925 | 1165 | 99.6 | Plus |
2L | 23513712 | 2L | 16447396..16447507 | 16..127 | 560 | 100 | Plus |
2R | 25286936 | 2R | 16692669..16692746 | 429..506 | 195 | 83.3 | Plus |
X | 23542271 | X | 9929351..9929426 | 504..429 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:55:27 has no hits.
BS09546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:06 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-PA | 1..909 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:09 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4475-PA | 1..909 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:52 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 67..976 | 16..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:14 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 67..976 | 16..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:14 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16447396..16447505 | 16..125 | 100 | -> | Plus |
2L | 16449186..16449743 | 126..683 | 100 | -> | Plus |
2L | 16449803..16450044 | 684..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:52 Download gff for
BS09546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16447396..16447505 | 16..125 | 100 | -> | Plus |
arm_2L | 16449186..16449743 | 126..683 | 100 | -> | Plus |
arm_2L | 16449803..16450044 | 684..924 | 99 | | Plus |
BS09546.complete Sequence
1355 bp (1355 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636441
> BS09546.complete
GAAGTTATCAGTCGACATGAAGGCGTGGATCTGGTTTACGTTTGTCGCGT
GCCTCTTTGCGGCAAGTACAGAAGCTGCCTCCAACTTAGTCTGCTACTAT
GACTCTTCGAGTTACACCAGGGAAGGTCTGGGCAAGCTGCTCAATCCCGA
TCTGGAGATCGCCTTGCAATTCTGCAGCCACTTGGTCTACGGCTATGCTG
GGCTGAGAGGTGAAAACCTACAGGCGTACAGTATGAACGAGAACCTGGAC
ATATACAAGCATCAGTTCTCCGAGGTTACCTCCCTCAAGAGGAAGTATCC
CCACCTGAAAGTTTTGTTGAGTGTGGGCGGCGATCATGACATCGACCCTG
ATCATCCCAACAAGTATATCGATCTGCTGGAGGGCGAGAAGGTTCGTCAA
ATTGGTTTCATCCGATCGGCCTATGACTTGGTTAAGACCTACGGCTTTGA
TGGCTTGGATCTGGCCTATCAGTTCCCAAAGAATAAGCCAAGAAAGGTTC
ACGGTGATCTTGGACTGGCATGGAAGAGTATTAAGAAGCTGTTCACCGGC
GATTTCATAGTGGATCCACACGCAGCCCTTCATAAGGAGCAGTTTACCGC
TTTAGTAAGGGATGTAAAGGACTCCTTGAGAGCTGATGGATTTCTGCTCA
GTCTGACTGTGCTGCCCAATGTAAACTCAACATGGTACTTTGATATTCCC
GCTCTGAATGGCCTGGTGGACTTTGTGAACCTGGCTACCTTCGATTTCCT
GACACCAGCCCGTAATCCCGAGGAGGCGGACTACAGTGCTCCCATCTACC
ATCCCGATGGATCGAAGGATAGGTTGGCACACCTTAACGCTGATTTCCAG
GTGGAGTACTGGCTATCTCAGGGATTCCCATCCAATAAGATCAATTTGGG
AGTTGCCACCTATGGTAATGCATGGAAACTTACCAAGGACTCGGGTCTCG
AAGGAGTTCCTGTTGTGCCGGAGACAAGTGGACCAGCACCCGAGGGCTTC
CAGTCCCAAAAGCCTGGATTACTAAGCTATGCTGAAATCTGCGGAAAGTT
GTCCAATCCCCAAAATCAATTCCTCAAGGGCAACGAATCGCCACTGCGAA
GAGTTTCTGATCCCACCAAGAGATTCGGAGGCATAGCTTATCGCCCAGTG
GATGGTCAGATAACCGAGGGCATTTGGGTGAGCTACGATGATCCCGACTC
CGCCTCCAATAAGGCAGCCTATGCCCGTGTCAAGAACCTAGGGGGCGTGG
CGCTGTTCGATCTGAGCTACGATGATTTCCGTGGACAGTGCTCAGGCGAT
AAGTATCCCATTCTGCGAGCCATCAAATATCGTCTATAAAAGCTTTCTAG
ACCAT
BS09546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf2-RA | 1323 | CG4475-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Idgf2-RB | 1107 | CG4475-PB | 1..1107 | 233..1339 | 5535 | 100 | Plus |
Idgf2-RC | 1107 | CG4475-PC | 1..1107 | 233..1339 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf2-RA | 1440 | CG4475-RA | 67..1392 | 16..1341 | 6630 | 100 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 531..1748 | 124..1341 | 6090 | 100 | Plus |
Idgf2-RC | 1367 | CG4475-RC | 104..1319 | 126..1341 | 6080 | 100 | Plus |
Idgf2-RB | 1796 | CG4475-RB | 67..180 | 16..129 | 555 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16449803..16450460 | 684..1341 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 16449184..16449744 | 124..684 | 2805 | 100 | Plus |
2L | 23513712 | 2L | 16447396..16447507 | 16..127 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16452688..16452839 | 1181..1332 | 220 | 76.3 | Plus |
2R | 25286936 | 2R | 16693462..16693628 | 1169..1335 | 220 | 75.4 | Plus |
2R | 25286936 | 2R | 16692669..16692746 | 429..506 | 195 | 83.3 | Plus |
X | 23542271 | X | 9929351..9929426 | 504..429 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:11:42 has no hits.
BS09546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:59 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 1..1323 | 17..1339 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:16 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 59..1384 | 16..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:20 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 68..1388 | 17..1337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:59 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 59..1384 | 16..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:26 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Idgf2-RA | 68..1388 | 17..1337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:26 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16447397..16447505 | 17..125 | 100 | -> | Plus |
2L | 16449186..16449743 | 126..683 | 100 | -> | Plus |
2L | 16449803..16450456 | 684..1337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:20 Download gff for
BS09546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16447397..16447505 | 17..125 | 100 | -> | Plus |
arm_2L | 16449186..16449743 | 126..683 | 100 | -> | Plus |
arm_2L | 16449803..16450456 | 684..1337 | 100 | | Plus |
BS09546.pep Sequence
Translation from 16 to 1338
> BS09546.pep
MKAWIWFTFVACLFAASTEAASNLVCYYDSSSYTREGLGKLLNPDLEIAL
QFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVL
LSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYDLVKTYGFDGLDLA
YQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDV
KDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARN
PEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYG
NAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQN
QFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKA
AYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL*
BS09546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idgf2-PA | 440 | CG4475-PA | 1..440 | 1..440 | 2344 | 100 | Plus |
Idgf2-PB | 368 | CG4475-PB | 1..368 | 73..440 | 1960 | 100 | Plus |
Idgf2-PC | 368 | CG4475-PC | 1..368 | 73..440 | 1960 | 100 | Plus |
Idgf1-PA | 439 | CG4472-PA | 18..436 | 18..438 | 1338 | 58.5 | Plus |
Idgf3-PD | 441 | CG4559-PD | 1..440 | 1..440 | 1338 | 56.4 | Plus |