Clone BS09546 Report

Search the DGRC for BS09546

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptIdgf2-RA
Protein status:BS09546.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09546.3prime Sequence

890 bp (774 high quality bases) assembled on 2006-04-19

> BS09546.3prime
ATGGTCTAGAAAGCTTTTATAGACGATATTTGATGGCTCGCAGAATGGGA
TACTTATCGCCTGAGCACTGTCCACGGAAATCATCGTAGCTCAGATCGAA
CAGCGCCACGCCCCCTAGGTTCTTGACACGGGCATAGGCTGCCTTATTGG
AGGCGGAGTCGGGATCATCGTAGCTCACCCAAATGCCCTCGGTTATCTGA
CCATCCACTGGGCGATAAGCTATGCCTCCGAATCTCTTGGTGGGATCAGA
AACTCTTCGCAGTGGCGATTCGTTGCCCTTGAGGAATTGATTTTGGGGAT
TGGACAACTTTCCGCAGATTTCAGCATAGCTTAGTAATCCAGGCTTTTGG
GACTGGAAGCCCTCGGGTGCTGGTCCACTTGTCTCCGGCACAACAGGAAC
TCCTTCGAGACCCGAGTCCTTGGTAAGTTTCCATGCATTACCATAGGTGG
CAACTCCCAAATTGATCTTATTGGATGGGAATCCCTGAGATAGCCAGTAC
TCCACCTGGAAATCAGCGTTAAGGTGTGCCAACCTATCCTTCGATCCATC
GGGATGGTAGATGGGAGCACTGTAGTCCGCCTCCTCGGGATTACGGGCTG
GTGTCAGGAAATCGAAGGTAGCCAGGTTCACAAAGTCCACCAGGCCATTC
AGAGCGGGAATATCAAAGTACCATGTTGAGTTTACATTGGGCAGCACAGT
CAGACTGAGCAGAAATCCATCAGCTCTCAAGGAGTCCTTTACATCCCTTA
CTAAAGCGGTAAACTGCTCCTTATGAAGGGCTGCGTGTGGATCCACTATG
AAATCGCCGGTGAACAGCTTCTTAATACTCTTCCATGCCAGTCCAAGATC
ACCGTGAACCTTTCTTGGCTTATTCTTTGGGAACTGATAG

BS09546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4475-PA 1323 Idgf2-RA 450..1323 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf2-RB 1796 CG4475-RB 873..1748 890..15 4380 100 Minus
Idgf2-RC 1367 CG4475-RC 444..1319 890..15 4380 100 Minus
Idgf2-RA 1440 CG4475-RA 517..1392 890..15 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16449803..16450460 672..15 3290 100 Minus
2L 23513712 2L 16449526..16449744 890..672 1095 100 Minus
2L 23513712 2L 16452688..16452839 175..24 220 76.3 Minus
2R 25286936 2R 16693462..16693628 187..21 220 75.4 Minus
Blast to na_te.dros performed on 2015-02-09 03:23:26 has no hits.

BS09546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:05 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-PA 450..1323 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:07 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4475-PA 450..1323 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:14:25 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 517..1392 15..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:23:12 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 517..1392 15..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:23:12 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16449526..16449743 673..890 100 -> Minus
2L 16449803..16450460 15..672 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:14:25 Download gff for BS09546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16449526..16449743 673..890 100 -> Minus
arm_2L 16449803..16450460 15..672 100   Minus

BS09546.5prime Sequence

925 bp (770 high quality bases) assembled on 2006-04-19

> BS09546.5prime
GAAGTTATCAGTCGACATGAAGGCGTGGATCTGGTTTACGTTTGTCGCGT
GCCTCTTTGCGGCAAGTACAGAAGCTGCCTCCAACTTAGTCTGCTACTAT
GACTCTTCGAGTTACACCAGGGAAGGTCTGGGCAAGCTGCTCAATCCCGA
TCTGGAGATCGCCTTGCAATTCTGCAGCCACTTGGTCTACGGCTATGCTG
GGCTGAGAGGTGAAAACCTACAGGCGTACAGTATGAACGAGAACCTGGAC
ATATACAAGCATCAGTTCTCCGAGGTTACCTCCCTCAAGAGGAAGTATCC
CCACCTGAAAGTTTTGTTGAGTGTGGGCGGCGATCATGACATCGACCCTG
ATCATCCCAACAAGTATATCGATCTGCTGGAGGGCGAGAAGGTTCGTCAA
ATTGGTTTCATCCGATCGGCCTATGACTTGGTTAAGACCTACGGCTTTGA
TGGCTTGGATCTGGCCTATCAGTTCCCAAAGAATAAGCCAAGAAAGGTTC
ACGGTGATCTTGGACTGGCATGGAAGAGTATTAAGAAGCTGTTCACCGGC
GATTTCATAGTGGATCCACACGCAGCCCTTCATAAGGAGCAGTTTACCGC
TTTAGTAAGGGATGTAAAGGACTCCTTGAGAGCTGATGGATTTCTGCTCA
GTCTGACTGTGCTGCCCAATGTAAACTCAACATGGTACTTTGATATTCCC
GCTCTGAATGGCCTGGTGGACTTTGTGAACCTGGCTACCTTCGATTTCCT
GACACCAGCCCGTAATCCCGAGGAGGCGGACTACAGTGCTCCCATCTACC
ATCCCGATGGATCGAAGGATAGGTTGGCACACCTTAACGCTGATTTCCAG
GTGGAGTACTGGCTATCTCAGGGATTCCATCCAATAAGATCAATTTGGGA
GTTGCCACCTATGGTAATGCATGGA

BS09546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4475-PA 1323 Idgf2-RA 1..862 17..878 4310 100 Plus
CG4475-PA 1323 Idgf2-RA 862..910 877..925 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf2-RA 1440 CG4475-RA 67..977 16..925 4530 99.9 Plus
Idgf2-RB 1796 CG4475-RB 531..1333 124..925 3990 99.9 Plus
Idgf2-RC 1367 CG4475-RC 104..904 126..925 3980 99.9 Plus
Idgf2-RB 1796 CG4475-RB 67..180 16..129 555 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16449184..16449744 124..684 2805 100 Plus
2L 23513712 2L 16449803..16450045 684..925 1165 99.6 Plus
2L 23513712 2L 16447396..16447507 16..127 560 100 Plus
2R 25286936 2R 16692669..16692746 429..506 195 83.3 Plus
X 23542271 X 9929351..9929426 504..429 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-10 01:55:27 has no hits.

BS09546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:06 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-PA 1..909 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:09 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4475-PA 1..909 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:52 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 67..976 16..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:14 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 67..976 16..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:14 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16447396..16447505 16..125 100 -> Plus
2L 16449186..16449743 126..683 100 -> Plus
2L 16449803..16450044 684..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:52 Download gff for BS09546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16447396..16447505 16..125 100 -> Plus
arm_2L 16449186..16449743 126..683 100 -> Plus
arm_2L 16449803..16450044 684..924 99   Plus

BS09546.complete Sequence

1355 bp (1355 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636441

> BS09546.complete
GAAGTTATCAGTCGACATGAAGGCGTGGATCTGGTTTACGTTTGTCGCGT
GCCTCTTTGCGGCAAGTACAGAAGCTGCCTCCAACTTAGTCTGCTACTAT
GACTCTTCGAGTTACACCAGGGAAGGTCTGGGCAAGCTGCTCAATCCCGA
TCTGGAGATCGCCTTGCAATTCTGCAGCCACTTGGTCTACGGCTATGCTG
GGCTGAGAGGTGAAAACCTACAGGCGTACAGTATGAACGAGAACCTGGAC
ATATACAAGCATCAGTTCTCCGAGGTTACCTCCCTCAAGAGGAAGTATCC
CCACCTGAAAGTTTTGTTGAGTGTGGGCGGCGATCATGACATCGACCCTG
ATCATCCCAACAAGTATATCGATCTGCTGGAGGGCGAGAAGGTTCGTCAA
ATTGGTTTCATCCGATCGGCCTATGACTTGGTTAAGACCTACGGCTTTGA
TGGCTTGGATCTGGCCTATCAGTTCCCAAAGAATAAGCCAAGAAAGGTTC
ACGGTGATCTTGGACTGGCATGGAAGAGTATTAAGAAGCTGTTCACCGGC
GATTTCATAGTGGATCCACACGCAGCCCTTCATAAGGAGCAGTTTACCGC
TTTAGTAAGGGATGTAAAGGACTCCTTGAGAGCTGATGGATTTCTGCTCA
GTCTGACTGTGCTGCCCAATGTAAACTCAACATGGTACTTTGATATTCCC
GCTCTGAATGGCCTGGTGGACTTTGTGAACCTGGCTACCTTCGATTTCCT
GACACCAGCCCGTAATCCCGAGGAGGCGGACTACAGTGCTCCCATCTACC
ATCCCGATGGATCGAAGGATAGGTTGGCACACCTTAACGCTGATTTCCAG
GTGGAGTACTGGCTATCTCAGGGATTCCCATCCAATAAGATCAATTTGGG
AGTTGCCACCTATGGTAATGCATGGAAACTTACCAAGGACTCGGGTCTCG
AAGGAGTTCCTGTTGTGCCGGAGACAAGTGGACCAGCACCCGAGGGCTTC
CAGTCCCAAAAGCCTGGATTACTAAGCTATGCTGAAATCTGCGGAAAGTT
GTCCAATCCCCAAAATCAATTCCTCAAGGGCAACGAATCGCCACTGCGAA
GAGTTTCTGATCCCACCAAGAGATTCGGAGGCATAGCTTATCGCCCAGTG
GATGGTCAGATAACCGAGGGCATTTGGGTGAGCTACGATGATCCCGACTC
CGCCTCCAATAAGGCAGCCTATGCCCGTGTCAAGAACCTAGGGGGCGTGG
CGCTGTTCGATCTGAGCTACGATGATTTCCGTGGACAGTGCTCAGGCGAT
AAGTATCCCATTCTGCGAGCCATCAAATATCGTCTATAAAAGCTTTCTAG
ACCAT

BS09546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf2-RA 1323 CG4475-PA 1..1323 17..1339 6615 100 Plus
Idgf2-RB 1107 CG4475-PB 1..1107 233..1339 5535 100 Plus
Idgf2-RC 1107 CG4475-PC 1..1107 233..1339 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf2-RA 1440 CG4475-RA 67..1392 16..1341 6630 100 Plus
Idgf2-RB 1796 CG4475-RB 531..1748 124..1341 6090 100 Plus
Idgf2-RC 1367 CG4475-RC 104..1319 126..1341 6080 100 Plus
Idgf2-RB 1796 CG4475-RB 67..180 16..129 555 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16449803..16450460 684..1341 3290 100 Plus
2L 23513712 2L 16449184..16449744 124..684 2805 100 Plus
2L 23513712 2L 16447396..16447507 16..127 560 100 Plus
2L 23513712 2L 16452688..16452839 1181..1332 220 76.3 Plus
2R 25286936 2R 16693462..16693628 1169..1335 220 75.4 Plus
2R 25286936 2R 16692669..16692746 429..506 195 83.3 Plus
X 23542271 X 9929351..9929426 504..429 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 07:11:42 has no hits.

BS09546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:59 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 1..1323 17..1339 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:16 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 59..1384 16..1341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:20 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 68..1388 17..1337 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:59 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 59..1384 16..1341 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:26 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
Idgf2-RA 68..1388 17..1337 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:26 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16447397..16447505 17..125 100 -> Plus
2L 16449186..16449743 126..683 100 -> Plus
2L 16449803..16450456 684..1337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:20 Download gff for BS09546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16447397..16447505 17..125 100 -> Plus
arm_2L 16449186..16449743 126..683 100 -> Plus
arm_2L 16449803..16450456 684..1337 100   Plus

BS09546.pep Sequence

Translation from 16 to 1338

> BS09546.pep
MKAWIWFTFVACLFAASTEAASNLVCYYDSSSYTREGLGKLLNPDLEIAL
QFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVL
LSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYDLVKTYGFDGLDLA
YQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDV
KDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARN
PEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYG
NAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQN
QFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKA
AYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL*

BS09546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Idgf2-PA 440 CG4475-PA 1..440 1..440 2344 100 Plus
Idgf2-PB 368 CG4475-PB 1..368 73..440 1960 100 Plus
Idgf2-PC 368 CG4475-PC 1..368 73..440 1960 100 Plus
Idgf1-PA 439 CG4472-PA 18..436 18..438 1338 58.5 Plus
Idgf3-PD 441 CG4559-PD 1..440 1..440 1338 56.4 Plus