Clone Sequence Records
BS09553.3prime Sequence
803 bp (802 high quality bases) assembled on 2006-04-19
> BS09553.3prime
ATGGTCTAGAAAGCTTTCACTCAGCGAAAGCCATGCGACGCTTTCCAGGC
AAATCCTCCGGCCACCATTCTGGACGTTCAACATAACAGCGCTCGCCATC
GATCATCAACTCAGGACGGCCGTTGAGAACCTTCTCGATGCGCAGCAGTG
CAATACCATGCTTGTGCGCAAAGCCAAAGACGCGTCCAAGTTTCGCTCCA
GCCAAAGAAGTTACGTCCTGGCTGGAACCCACATCAATTGGGGCCGTCAA
CCGGATGGGCATGTATCGCTTGCGGATCACGCCCGAATGATGGACGCGGG
CAGTTAGCTCCTGGCCCACATAGCAGCCCTTGTGGAAGCTCACGCCATGC
AGGTAATCCGCATTCGCTTCGAGGGGAAAACATTTGCCCGGTGTCAGTTC
CGAGCAGCCCTCGCCCACTCCTTGCTTGTAGCGCAGCAGTTGATAACTAT
TGTCGGAGGAGGCTGCTGTGGCGGTACCGAAGTCAGCAAAACATTTGGAC
AGCTTGGACCAGTCCATGTCGGTGGGGGCCAGGATGCGAGTGCCAAGGAC
ATGCAGCCTCGGGTCGGGAGACACAAATAAGTCTGGATGTGGATTGGGTA
CAGCCTCCGAAGCGTCCTTGAGGTTAAACATAACCCAAGGGGTATACTCG
TCGTCTACACTGTCGACCTCAATGCGCCTGCGAACGCGGTAGGTGCGAAG
ATGGCGTCGGAAGTCCGAGGAAGCCTCCCGATCGCACTCAACAAGGATGG
TTTCCGGGTTGTTGGTGCGGTACAAGATGGTGTCGTACAGCAGCCTGCCC
GCC
BS09553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 1047 | CG8043-RA | 261..1047 | 803..17 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 395..1181 | 803..17 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:07:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677374..8678160 | 803..17 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:08:01 has no hits.
BS09553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:21 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 261..1047 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:30 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 261..1047 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:30 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 395..1184 | 11..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:08:21 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 395..1184 | 11..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:08:21 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677374..8678163 | 11..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:30 Download gff for
BS09553.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4503096..4503885 | 11..803 | 99 | | Minus |
BS09553.5prime Sequence
915 bp (846 high quality bases) assembled on 2006-04-19
> BS09553.5prime
GAAGTTATCAGTCGACATGAATAGATGTTCGAATCCGTGGTTTCTGCGCG
CCGTGCGCCATCACATACGTAATCTCCACGAGATGAGGATTCCATACGCC
CGTCCGGTGGGCCCAAATCAGCGCAATTTCACGTTGGAGCCGCTGGGAAA
TCGAGAACTCATCCGTGTCCACGGGGCCGAGGTGGTGCCATTCCTGCAGG
GTCTTGCGACCAACGATGTGGCCCGGATTCAGTCGCCGGGGGGTCCTGCC
TCAATGTACGCCCATTTTCTCAACAAGGCGGGCAGGCTGCTGTACGACAC
CATCTTGTACCGCACCAACAACCCGGAAACCATCCTTGTTGAGTGCGATC
GGGAGGCTTCCTCGGACTTCCGACGCCATCTTCGCACCTACCGCGTTCGC
AGGCGCATTGAGGTCGACAGTGTAGACGACGAGTATACCCCTTGGGTTAT
GTTTAACCTCAAGGACGCTTCGGAGGCTGTACCCAATCCACATCCAGACT
TATTTGTGTCTCCCGACCCGAGGCTGCATGTCCTTGGCACTCGCATCCTG
GCCCCCACCGACATGGACTGGTCCAAGCTGTCCAAATGTTTTGCTGACTT
CGGTACCGCCACAGCAGCCTCCTCCGACAATAGTTATCAACTGCTGCGCT
ACAAGCAAGGAGTGGGCGAGGGCTGCTCGGAACTGACACCGGGCAAATGT
TTTCCCCTCGAAGCGAATGCGGATTACCTGCATGGCGTGAGCTTCCACAA
GGGCTGCTATGTGGGCCAGGAGCTAACTGCCCGCGTCCATCATTCGGGCG
TGATCCGCANGCGATACATGCCCATCCGGTTGACGGCCCCAATTGATGTG
GGTTCCAGCCAGGACGTAACTTCTTTGGCTGGAGCGAAACTTGGACGCGT
CTTTGGCTTTGCGCA
BS09553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 1047 | CG8043-RA | 1..899 | 17..915 | 4476 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 134..1033 | 16..915 | 4489 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677113..8678012 | 16..915 | 4489 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:59:27 has no hits.
BS09553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:22 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:31 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:26:01 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 125..1032 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:02 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 125..1032 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:02 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677113..8678011 | 16..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:26:01 Download gff for
BS09553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4502835..4503733 | 16..914 | 99 | | Plus |
BS09553.complete Sequence
1079 bp (1079 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636442
> BS09553.complete
GAAGTTATCAGTCGACATGAATAGATGTTCGAATCCGTGGTTTCTGCGCG
CCGTGCGCCATCACATACGTAATCTCCACGAGATGAGGATTCCATACGCC
CGTCCGGTGGGCCCAAATCAGCGCAATTTCACGTTGGAGCCGCTGGGAAA
TCGAGAACTCATCCGTGTCCACGGGGCCGAGGTGGTGCCATTCCTGCAGG
GTCTTGCGACCAACGATGTGGCCCGGATTCAGTCGCCGGGGGGTCCTGCC
TCAATGTACGCCCATTTTCTCAACAAGGCGGGCAGGCTGCTGTACGACAC
CATCTTGTACCGCACCAACAACCCGGAAACCATCCTTGTTGAGTGCGATC
GGGAGGCTTCCTCGGACTTCCGACGCCATCTTCGCACCTACCGCGTTCGC
AGGCGCATTGAGGTCGACAGTGTAGACGACGAGTATACCCCTTGGGTTAT
GTTTAACCTCAAGGACGCTTCGGAGGCTGTACCCAATCCACATCCAGACT
TATTTGTGTCTCCCGACCCGAGGCTGCATGTCCTTGGCACTCGCATCCTG
GCCCCCACCGACATGGACTGGTCCAAGCTGTCCAAATGTTTTGCTGACTT
CGGTACCGCCACAGCAGCCTCCTCCGACAATAGTTATCAACTGCTGCGCT
ACAAGCAAGGAGTGGGCGAGGGCTGCTCGGAACTGACACCGGGCAAATGT
TTTCCCCTCGAAGCGAATGCGGATTACCTGCATGGCGTGAGCTTCCACAA
GGGCTGCTATGTGGGCCAGGAGCTAACTGCCCGCGTCCATCATTCGGGCG
TGATCCGCAAGCGATACATGCCCATCCGGTTGACGGCCCCAATTGATGTG
GGTTCCAGCCAGGACGTAACTTCTTTGGCTGGAGCGAAACTTGGACGCGT
CTTTGGCTTTGCGCACAAGCATGGTATTGCACTGCTGCGCATCGAGAAGG
TTCTCAACGGCCGTCCTGAGTTGATGATCGATGGCGAGCGCTGTTATGTT
GAACGTCCAGAATGGTGGCCGGAGGATTTGCCTGGAAAGCGTCGCATGGC
TTTCGCTGAGTGAAAGCTTTCTAGACCAT
BS09553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1047 | CG8043-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-RA | 1254 | CG8043-RA | 134..1181 | 16..1063 | 5240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8677113..8678160 | 16..1063 | 5240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:40 has no hits.
BS09553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:00 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:17 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 123..1182 | 9..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:46 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 135..1180 | 17..1062 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:00 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 123..1182 | 9..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:17 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8043-RA | 135..1180 | 17..1062 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:17 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8677114..8678159 | 17..1062 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:46 Download gff for
BS09553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4502836..4503881 | 17..1062 | 100 | | Plus |
BS09553.pep Sequence
Translation from 16 to 1062
> BS09553.pep
MNRCSNPWFLRAVRHHIRNLHEMRIPYARPVGPNQRNFTLEPLGNRELIR
VHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAGRLLYDTILYRT
NNPETILVECDREASSDFRRHLRTYRVRRRIEVDSVDDEYTPWVMFNLKD
ASEAVPNPHPDLFVSPDPRLHVLGTRILAPTDMDWSKLSKCFADFGTATA
ASSDNSYQLLRYKQGVGEGCSELTPGKCFPLEANADYLHGVSFHKGCYVG
QELTARVHHSGVIRKRYMPIRLTAPIDVGSSQDVTSLAGAKLGRVFGFAH
KHGIALLRIEKVLNGRPELMIDGERCYVERPEWWPEDLPGKRRMAFAE*
BS09553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8043-PA | 348 | CG8043-PA | 1..348 | 1..348 | 1869 | 100 | Plus |
