Clone Sequence Records
BS09556.3prime Sequence
828 bp (792 high quality bases) assembled on 2006-04-19
> BS09556.3prime
ATGGTCTAGAAAGCTTTTACTCAACGAACTCCGGTTCGCCGGAGTATGTG
CAACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGAT
GCAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAA
CGAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAAT
TTCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGG
ATCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCT
TCTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGC
CACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGAT
GATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCG
ATATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGG
GCGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAA
GCCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGG
GCTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCG
CAGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGG
CACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCT
TTTCCTTCAAGATATTGGCGTACCGATCCTCGCCGACGCAGCCGAAGAAC
ACAGCCACCCTGGGCTGTCGAAGAATCC
BS09556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PA | 1038 | CG11255-RA | 227..1038 | 828..17 | 4060 | 100 | Minus |
CG11255-PB | 1038 | CG11255-RB | 227..1038 | 828..17 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 461..1274 | 828..15 | 4070 | 100 | Minus |
AdenoK-RB | 1387 | CG11255-RB | 268..1081 | 828..15 | 4070 | 100 | Minus |
AdenoK-RA | 1580 | CG11255-RA | 461..1274 | 828..15 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020288..13020827 | 15..554 | 2700 | 100 | Plus |
3L | 28110227 | 3L | 13021073..13021348 | 553..828 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:21:02 has no hits.
BS09556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:27 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 227..1038 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:40 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 227..1038 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:17:16 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 461..1274 | 15..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:56:11 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 461..1274 | 15..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:56:11 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020288..13020826 | 15..553 | 100 | <- | Plus |
3L | 13021074..13021348 | 554..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:17:16 Download gff for
BS09556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013388..13013926 | 15..553 | 100 | <- | Plus |
arm_3L | 13014174..13014448 | 554..828 | 100 | | Plus |
BS09556.5prime Sequence
770 bp (769 high quality bases) assembled on 2006-04-19
> BS09556.5prime
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGA
BS09556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PA | 1038 | CG11255-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
CG11255-PB | 1038 | CG11255-RB | 18..754 | 34..770 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 235..988 | 17..770 | 3770 | 100 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 235..988 | 17..770 | 3770 | 100 | Plus |
AdenoK-RB | 1387 | CG11255-RB | 59..795 | 34..770 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13021073..13021557 | 518..34 | 2425 | 100 | Minus |
3L | 28110227 | 3L | 13020574..13020827 | 770..517 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:09:03 has no hits.
BS09556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:28 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:41 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:46 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 229..987 | 10..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:49 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 229..987 | 10..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:49 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020575..13020826 | 518..769 | 100 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:46 Download gff for
BS09556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013675..13013926 | 518..769 | 100 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
BS09556.complete Sequence
1070 bp (1070 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ638826
> BS09556.complete
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GTAAAAGCTTTCTAGACCAT
BS09556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1038 | CG11255-PC | 1..1038 | 17..1054 | 5190 | 100 | Plus |
AdenoK-RA | 1038 | CG11255-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
AdenoK-RB | 1038 | CG11255-PB | 18..1038 | 34..1054 | 5105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 235..1274 | 17..1056 | 5200 | 100 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 235..1274 | 17..1056 | 5200 | 100 | Plus |
AdenoK-RB | 1387 | CG11255-RB | 59..1081 | 34..1056 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020288..13020827 | 1056..517 | 2700 | 100 | Minus |
3L | 28110227 | 3L | 13021073..13021557 | 518..34 | 2425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:53:36 has no hits.
BS09556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:48 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:02 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 285..1330 | 10..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:38 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 235..1270 | 17..1052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:49 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 285..1330 | 10..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:45 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 235..1270 | 17..1052 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:45 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020292..13020826 | 518..1052 | 100 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
3L | 13022438..13022454 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:38 Download gff for
BS09556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013392..13013926 | 518..1052 | 100 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
arm_3L | 13015538..13015554 | 17..33 | 100 | | Minus |
BS09556.pep Sequence
Translation from 16 to 1053
> BS09556.pep
MTSTLQEGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVE*
BS09556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-PC | 345 | CG11255-PC | 1..345 | 1..345 | 1794 | 100 | Plus |
AdenoK-PA | 345 | CG11255-PA | 1..345 | 1..345 | 1794 | 100 | Plus |
AdenoK-PB | 345 | CG11255-PB | 1..345 | 1..345 | 1771 | 98.6 | Plus |
CG3809-PA | 396 | CG3809-PA | 52..393 | 5..345 | 710 | 44 | Plus |
Ady43A-PA | 366 | CG1851-PA | 87..363 | 64..335 | 267 | 28 | Plus |