Clone BS09556 Report

Search the DGRC for BS09556

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptAdenoK-RA
Protein status:BS09556.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09556.3prime Sequence

828 bp (792 high quality bases) assembled on 2006-04-19

> BS09556.3prime
ATGGTCTAGAAAGCTTTTACTCAACGAACTCCGGTTCGCCGGAGTATGTG
CAACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGAT
GCAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAA
CGAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAAT
TTCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGG
ATCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCT
TCTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGC
CACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGAT
GATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCG
ATATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGG
GCGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAA
GCCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGG
GCTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCG
CAGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGG
CACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCT
TTTCCTTCAAGATATTGGCGTACCGATCCTCGCCGACGCAGCCGAAGAAC
ACAGCCACCCTGGGCTGTCGAAGAATCC

BS09556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PA 1038 CG11255-RA 227..1038 828..17 4060 100 Minus
CG11255-PB 1038 CG11255-RB 227..1038 828..17 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 461..1274 828..15 4070 100 Minus
AdenoK-RB 1387 CG11255-RB 268..1081 828..15 4070 100 Minus
AdenoK-RA 1580 CG11255-RA 461..1274 828..15 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020288..13020827 15..554 2700 100 Plus
3L 28110227 3L 13021073..13021348 553..828 1380 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:21:02 has no hits.

BS09556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:27 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 227..1038 17..828 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:40 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 227..1038 17..828 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:17:16 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 461..1274 15..828 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:56:11 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 461..1274 15..828 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:56:11 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020288..13020826 15..553 100 <- Plus
3L 13021074..13021348 554..828 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:17:16 Download gff for BS09556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013388..13013926 15..553 100 <- Plus
arm_3L 13014174..13014448 554..828 100   Plus

BS09556.5prime Sequence

770 bp (769 high quality bases) assembled on 2006-04-19

> BS09556.5prime
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGA

BS09556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PA 1038 CG11255-RA 1..754 17..770 3770 100 Plus
CG11255-PB 1038 CG11255-RB 18..754 34..770 3685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 235..988 17..770 3770 100 Plus
AdenoK-RA 1580 CG11255-RA 235..988 17..770 3770 100 Plus
AdenoK-RB 1387 CG11255-RB 59..795 34..770 3685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13021073..13021557 518..34 2425 100 Minus
3L 28110227 3L 13020574..13020827 770..517 1270 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:09:03 has no hits.

BS09556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:28 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:41 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:45:46 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 229..987 10..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:49 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 229..987 10..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:49 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020575..13020826 518..769 100 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:45:46 Download gff for BS09556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013675..13013926 518..769 100 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus

BS09556.complete Sequence

1070 bp (1070 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ638826

> BS09556.complete
GAAGTTATCAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GTAAAAGCTTTCTAGACCAT

BS09556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1038 CG11255-PC 1..1038 17..1054 5190 100 Plus
AdenoK-RA 1038 CG11255-PA 1..1038 17..1054 5190 100 Plus
AdenoK-RB 1038 CG11255-PB 18..1038 34..1054 5105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 235..1274 17..1056 5200 100 Plus
AdenoK-RA 1580 CG11255-RA 235..1274 17..1056 5200 100 Plus
AdenoK-RB 1387 CG11255-RB 59..1081 34..1056 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020288..13020827 1056..517 2700 100 Minus
3L 28110227 3L 13021073..13021557 518..34 2425 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:53:36 has no hits.

BS09556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:48 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 1..1038 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:02 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 285..1330 10..1056 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:38 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 235..1270 17..1052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:49 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 285..1330 10..1056 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:45 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 235..1270 17..1052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:45 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13020292..13020826 518..1052 100 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
3L 13022438..13022454 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:38 Download gff for BS09556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013392..13013926 518..1052 100 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus
arm_3L 13015538..13015554 17..33 100   Minus

BS09556.pep Sequence

Translation from 16 to 1053

> BS09556.pep
MTSTLQEGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVE*

BS09556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-PC 345 CG11255-PC 1..345 1..345 1794 100 Plus
AdenoK-PA 345 CG11255-PA 1..345 1..345 1794 100 Plus
AdenoK-PB 345 CG11255-PB 1..345 1..345 1771 98.6 Plus
CG3809-PA 396 CG3809-PA 52..393 5..345 710 44 Plus
Ady43A-PA 366 CG1851-PA 87..363 64..335 267 28 Plus