Clone BS09560 Report

Search the DGRC for BS09560

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG31148-RA
Protein status:BS09560.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09560.3prime Sequence

945 bp (801 high quality bases) assembled on 2006-04-19

> BS09560.3prime
ATGGTCTAGAAAGCTTTCAACTGTACAGCAGAGTGTGAATGGATTTGGCC
GGAACATTGACAACGAACTGACCCCGAATACTATCCACCAAAGTGATGTC
CAGATCGGCGCGACCACTATTGAAGAGAACGGCGGTGATTTTGTTGTCCG
GTCGCAGGAATGCAACGGAATCCAGATTAACATTACTAGGTACTGCATCT
ATGCGAACGGATCCCTCTGGAACCCACTTGGAGAAGTGACCAATGGCATA
GAACATGGGCTGCTTGTAAAACTCCTCGAATGTTGTTGTATTCACAATCA
CTGGGGCATCCACCGTGTTGTCCACGTAGTTAGGACCGCCAATCTCGTCC
AGACAAATGTTCCAGTCAATCCAGCCATGGAAGCCCAGCTTAATGTTAAG
CAAGTAATCTCTGGCATACTTCTCGGCCCGCTCCCAGCTTCCCAGCAGAG
GAGCAGCTGCCTGCCAGGGCTTGTCCCCTATGCAGGACTCGGAAACTATC
AAAATCTTGTCGGGGGCATATTCCTTGGTCTGTTCGATAAAGCTGTTGCC
AAATATTTCATCCCAATACCAGTGCAGCGATAGCCCATCGAGGTAATCAA
TCGAGTTTGGTCGAGTGCGGTTCATCATTTTAAACCAATGGGGAAAGGAA
TAGCGTTGGTCATCGTTGCCAAACAGGGTGATGTCCTTGAACTCAGAGTT
ACGGATCGTGGGACCCAGATAATCGTTCAGCCAAATGGCCTGAGTCTGTG
GCGTCCATCCCAAGCTCATGAACTTAACGAAATACATGAAAATGATGCCA
TTCAATGGTTCGTTGCCCGTGGAAATGGCCCAAATGGGAATGCCATTGTC
CTTCATAAGTCTTAGCCAACGCAGATGGTAATCGGCCCAAGTCTGGTAGT
AAGCCCTCTTGAGGCGTCCAATCCTGTCCACCTGTTGTTTGTCTT

BS09560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 1686 CG31148-RA 782..1686 921..17 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 791..1726 945..11 4640 99.8 Minus
CG31414-RC 2335 CG31414-RC 901..1040 835..696 190 76.6 Minus
CG31414-RB 2030 CG31414-RB 901..1040 835..696 190 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23701878..23702221 626..283 1720 100 Minus
3R 32079331 3R 23701463..23701783 945..626 1555 99.7 Minus
3R 32079331 3R 23702283..23702554 282..11 1345 99.6 Minus
Blast to na_te.dros performed on 2015-02-06 16:08:09 has no hits.

BS09560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:33 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 757..1686 17..945 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:48 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 757..1686 17..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:33 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 791..1726 11..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:08:26 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 791..1726 11..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:08:26 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23701463..23701783 626..945 99 -> Minus
3R 23701879..23702221 283..625 100 -> Minus
3R 23702283..23702554 11..282 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:33 Download gff for BS09560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19527185..19527505 626..945 99 -> Minus
arm_3R 19527601..19527943 283..625 100 -> Minus
arm_3R 19528005..19528276 11..282 99   Minus

BS09560.5prime Sequence

805 bp (625 high quality bases) assembled on 2006-04-19

> BS09560.5prime
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGC

BS09560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 1686 CG31148-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 35..823 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23700770..23701495 80..805 3630 100 Plus
3R 32079331 3R 23700655..23700720 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 14:14:23 has no hits.

BS09560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:34 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:50 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:24 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 21..823 1..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:45 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 21..823 1..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:45 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23700641..23700718 1..80 93 -> Plus
3R 23700771..23701495 81..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:24 Download gff for BS09560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19526363..19526440 1..80 93 -> Plus
arm_3R 19526493..19527217 81..805 100   Plus

BS09560.complete Sequence

1718 bp assembled on 2007-10-17

GenBank Submission: FJ636443

> BS09560.complete
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCTGCGT
TGGCTAAGACTTATGAAGGACAATGGCATTCCCATTTGGGCCATTTCCAC
GGGCAACGAACCATTGAATGGCATCATTTTCATGTATTTCGTTAAGTTCA
TGAGCTTGGGATGGACGCCACAGACTCAGGCCATTTGGCTGAACGATTAT
CTGGGTCCCACGATCCGTAACTCTGAGTTCAAGGACATCACCCTGTTTGG
CAACGATGACCAACGCTATTCCTTTCCCCATTGGTTTAAAATGATGAACC
GCACTCGACCAAACTCGATTGATTACCTCGATGGGCTATCGCTGCACTGG
TATTGGGATGAAATATTTGGCAACAGCTTTATCGAACAGACCAAGGAATA
TGCCCCCGACAAGATTTTGATAGTTTCCGAGTCCTGCATAGGGGACAAGC
CCTGGCAGGCAGCTGCTCCTCTGCTGGGAAGCTGGGAGCGGGCCGAGAAG
TATGCCAGAGATTACTTGCTTAACATTAAGCTGGGCTTCCATGGCTGGAT
TGACTGGAACATTTGTCTGGACGAGATTGGCGGTCCTAACTACGTGGACA
ACACGGTGGATGCCCCAGTGATTGTGAATACAACAACATTCGAGGAGTTT
TACAAGCAGCCCATGTTCTATGCCATTGGTCACTTCTCCAAGTGGGTTCC
AGAGGGATCCGTTCGCATAGATGCAGTACCTAGTAATGTTAATCTGGATT
CCGTTGCATTCCTGCGACCGGACAACAAAATCACCGCCGTTCTCTTCAAT
AGTGGTCGCGCCGATCTGGACATCACTTTGGTGGATAGTATTCGGGGTCA
GTTCGTTGTCAATGTTCCGGCCAAATCCATTCACACTCTGCTGTACAGTT
GAAAGCTTTCTAGACCAT

BS09560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1686 CG31148-PA 1..1686 17..1702 8430 100 Plus
CG31414-RC 1701 CG31414-PC 868..1007 884..1023 190 75.7 Plus
CG31414-RB 1701 CG31414-PB 868..1007 884..1023 190 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-RA 1777 CG31148-RA 35..1726 17..1708 8445 99.9 Plus
CG31414-RC 2335 CG31414-RC 901..1040 884..1023 190 75.7 Plus
CG31414-RB 2030 CG31414-RB 901..1040 884..1023 190 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23700770..23701783 80..1093 5070 100 Plus
3R 32079331 3R 23701878..23702221 1093..1436 1720 100 Plus
3R 32079331 3R 23702283..23702554 1437..1708 1345 99.6 Plus
3R 32079331 3R 23700655..23700720 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:13 has no hits.

BS09560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:21 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 1..1686 17..1702 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:26 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 4..1709 1..1708 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:23 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 35..1719 17..1701 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:20 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 18..1702 17..1701 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:39 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
CG31148-RA 35..1719 17..1701 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:39 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23702283..23702547 1437..1701 100   Plus
3R 23700655..23700718 17..80 100 -> Plus
3R 23700771..23701783 81..1093 100 -> Plus
3R 23701879..23702221 1094..1436 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:23 Download gff for BS09560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19528005..19528269 1437..1701 100   Plus
arm_3R 19526377..19526440 17..80 100 -> Plus
arm_3R 19526493..19527505 81..1093 100 -> Plus
arm_3R 19527601..19527943 1094..1436 100 -> Plus

BS09560.pep Sequence

Translation from 16 to 1701

> BS09560.pep
MGKMFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDY
LENPVLTDENEWFLISSSKQGLRFSTTSDKFGKEEKFTVQDYVEPTQETA
NATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSKTHQKMVGFGGSY
TGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWS
YAEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPP
WMKTNNRWTGFGRLKRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPL
NGIIFMYFVKFMSLGWTPQTQAIWLNDYLGPTIRNSEFKDITLFGNDDQR
YSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIFGNSFIEQTKEYAPDKI
LIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNIC
LDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVR
IDAVPSNVNLDSVAFLRPDNKITAVLFNSGRADLDITLVDSIRGQFVVNV
PAKSIHTLLYS*

BS09560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31148-PA 561 CG31148-PA 1..561 1..561 3003 100 Plus
CG31414-PC 566 CG31414-PC 15..565 15..560 1431 49.2 Plus
CG31414-PB 566 CG31414-PB 15..565 15..560 1431 49.2 Plus