Clone Sequence Records
BS09560.3prime Sequence
945 bp (801 high quality bases) assembled on 2006-04-19
> BS09560.3prime
ATGGTCTAGAAAGCTTTCAACTGTACAGCAGAGTGTGAATGGATTTGGCC
GGAACATTGACAACGAACTGACCCCGAATACTATCCACCAAAGTGATGTC
CAGATCGGCGCGACCACTATTGAAGAGAACGGCGGTGATTTTGTTGTCCG
GTCGCAGGAATGCAACGGAATCCAGATTAACATTACTAGGTACTGCATCT
ATGCGAACGGATCCCTCTGGAACCCACTTGGAGAAGTGACCAATGGCATA
GAACATGGGCTGCTTGTAAAACTCCTCGAATGTTGTTGTATTCACAATCA
CTGGGGCATCCACCGTGTTGTCCACGTAGTTAGGACCGCCAATCTCGTCC
AGACAAATGTTCCAGTCAATCCAGCCATGGAAGCCCAGCTTAATGTTAAG
CAAGTAATCTCTGGCATACTTCTCGGCCCGCTCCCAGCTTCCCAGCAGAG
GAGCAGCTGCCTGCCAGGGCTTGTCCCCTATGCAGGACTCGGAAACTATC
AAAATCTTGTCGGGGGCATATTCCTTGGTCTGTTCGATAAAGCTGTTGCC
AAATATTTCATCCCAATACCAGTGCAGCGATAGCCCATCGAGGTAATCAA
TCGAGTTTGGTCGAGTGCGGTTCATCATTTTAAACCAATGGGGAAAGGAA
TAGCGTTGGTCATCGTTGCCAAACAGGGTGATGTCCTTGAACTCAGAGTT
ACGGATCGTGGGACCCAGATAATCGTTCAGCCAAATGGCCTGAGTCTGTG
GCGTCCATCCCAAGCTCATGAACTTAACGAAATACATGAAAATGATGCCA
TTCAATGGTTCGTTGCCCGTGGAAATGGCCCAAATGGGAATGCCATTGTC
CTTCATAAGTCTTAGCCAACGCAGATGGTAATCGGCCCAAGTCTGGTAGT
AAGCCCTCTTGAGGCGTCCAATCCTGTCCACCTGTTGTTTGTCTT
BS09560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 1686 | CG31148-RA | 782..1686 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 791..1726 | 945..11 | 4640 | 99.8 | Minus |
CG31414-RC | 2335 | CG31414-RC | 901..1040 | 835..696 | 190 | 76.6 | Minus |
CG31414-RB | 2030 | CG31414-RB | 901..1040 | 835..696 | 190 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23701878..23702221 | 626..283 | 1720 | 100 | Minus |
3R | 32079331 | 3R | 23701463..23701783 | 945..626 | 1555 | 99.7 | Minus |
3R | 32079331 | 3R | 23702283..23702554 | 282..11 | 1345 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:08:09 has no hits.
BS09560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:33 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 757..1686 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:48 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 757..1686 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:20:33 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 791..1726 | 11..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:08:26 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 791..1726 | 11..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:08:26 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23701463..23701783 | 626..945 | 99 | -> | Minus |
3R | 23701879..23702221 | 283..625 | 100 | -> | Minus |
3R | 23702283..23702554 | 11..282 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:20:33 Download gff for
BS09560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19527185..19527505 | 626..945 | 99 | -> | Minus |
arm_3R | 19527601..19527943 | 283..625 | 100 | -> | Minus |
arm_3R | 19528005..19528276 | 11..282 | 99 | | Minus |
BS09560.5prime Sequence
805 bp (625 high quality bases) assembled on 2006-04-19
> BS09560.5prime
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGC
BS09560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 1686 | CG31148-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 35..823 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23700770..23701495 | 80..805 | 3630 | 100 | Plus |
3R | 32079331 | 3R | 23700655..23700720 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:14:23 has no hits.
BS09560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:34 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:24:50 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:24 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 21..823 | 1..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:45 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 21..823 | 1..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:45 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23700641..23700718 | 1..80 | 93 | -> | Plus |
3R | 23700771..23701495 | 81..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:24 Download gff for
BS09560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19526363..19526440 | 1..80 | 93 | -> | Plus |
arm_3R | 19526493..19527217 | 81..805 | 100 | | Plus |
BS09560.complete Sequence
1718 bp assembled on 2007-10-17
GenBank Submission: FJ636443
> BS09560.complete
GAAGTTATCAGTCGACATGGGAAAAATGTTCGCCAGCAGAGGAATGCTGG
TGCTTGGAGTGCTTCTGGTATCAGCAATTGGTGGCCAATCGGAATCGATC
CCCTGCAAACTCATCGATGCAGAACATGGCAAAGTGTGCGTCTGCACGGC
GGACTATTGTGATTATCTGGAGAATCCCGTCCTGACGGACGAAAATGAGT
GGTTCCTTATCTCCAGTTCCAAACAGGGACTTCGGTTCTCCACAACTAGT
GACAAATTCGGTAAGGAGGAGAAGTTTACCGTGCAGGATTATGTGGAACC
CACGCAGGAGACTGCGAATGCGACAATCCTGTCTCGTTTGCTCGATAAGG
TGGTGGACAGTGCTTTTACCTTGGAGTCCCGGGAGAGTTCCATAACTCGC
ACTGTAACCCTGCGACTGGACAGAAGTAAGACCCACCAGAAGATGGTTGG
TTTCGGTGGCAGCTACACCGGAGCAGTGGAATACCTGGTAGAGAACTTCA
AGCATTCGGAACTGGCTGACCATCTGTACAAGTCCTTTTACGCCGAGGAT
GGACTGGGCTTCAATCTCATGCGAGTTTCCATTGGCGGCTGTGACTTTGA
CTTGGAACCCTGGTCCTATGCCGAAGAGGAGGGCGACACCGAGCTATCCG
ATATGGATGAACTAAACGCGCATGATGTGACGCGAGTTGCACAGATCAAG
CGTCTCATTGAGGTGTCCGGAGTGAAGAATCTGTTGGTCAAAGGAGCTGC
CTGGAGTTCCCCGCCCTGGATGAAGACAAACAACAGGTGGACAGGATTTG
GACGCCTCAAGAGGGCTTACTACCAGACTTGGGCCGATTACCATCTGCGT
TGGCTAAGACTTATGAAGGACAATGGCATTCCCATTTGGGCCATTTCCAC
GGGCAACGAACCATTGAATGGCATCATTTTCATGTATTTCGTTAAGTTCA
TGAGCTTGGGATGGACGCCACAGACTCAGGCCATTTGGCTGAACGATTAT
CTGGGTCCCACGATCCGTAACTCTGAGTTCAAGGACATCACCCTGTTTGG
CAACGATGACCAACGCTATTCCTTTCCCCATTGGTTTAAAATGATGAACC
GCACTCGACCAAACTCGATTGATTACCTCGATGGGCTATCGCTGCACTGG
TATTGGGATGAAATATTTGGCAACAGCTTTATCGAACAGACCAAGGAATA
TGCCCCCGACAAGATTTTGATAGTTTCCGAGTCCTGCATAGGGGACAAGC
CCTGGCAGGCAGCTGCTCCTCTGCTGGGAAGCTGGGAGCGGGCCGAGAAG
TATGCCAGAGATTACTTGCTTAACATTAAGCTGGGCTTCCATGGCTGGAT
TGACTGGAACATTTGTCTGGACGAGATTGGCGGTCCTAACTACGTGGACA
ACACGGTGGATGCCCCAGTGATTGTGAATACAACAACATTCGAGGAGTTT
TACAAGCAGCCCATGTTCTATGCCATTGGTCACTTCTCCAAGTGGGTTCC
AGAGGGATCCGTTCGCATAGATGCAGTACCTAGTAATGTTAATCTGGATT
CCGTTGCATTCCTGCGACCGGACAACAAAATCACCGCCGTTCTCTTCAAT
AGTGGTCGCGCCGATCTGGACATCACTTTGGTGGATAGTATTCGGGGTCA
GTTCGTTGTCAATGTTCCGGCCAAATCCATTCACACTCTGCTGTACAGTT
GAAAGCTTTCTAGACCAT
BS09560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1686 | CG31148-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
CG31414-RC | 1701 | CG31414-PC | 868..1007 | 884..1023 | 190 | 75.7 | Plus |
CG31414-RB | 1701 | CG31414-PB | 868..1007 | 884..1023 | 190 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-RA | 1777 | CG31148-RA | 35..1726 | 17..1708 | 8445 | 99.9 | Plus |
CG31414-RC | 2335 | CG31414-RC | 901..1040 | 884..1023 | 190 | 75.7 | Plus |
CG31414-RB | 2030 | CG31414-RB | 901..1040 | 884..1023 | 190 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23700770..23701783 | 80..1093 | 5070 | 100 | Plus |
3R | 32079331 | 3R | 23701878..23702221 | 1093..1436 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 23702283..23702554 | 1437..1708 | 1345 | 99.6 | Plus |
3R | 32079331 | 3R | 23700655..23700720 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:13 has no hits.
BS09560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:21 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 1..1686 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:26 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 4..1709 | 1..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:23 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 35..1719 | 17..1701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:20 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 18..1702 | 17..1701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:39 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31148-RA | 35..1719 | 17..1701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:39 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23702283..23702547 | 1437..1701 | 100 | | Plus |
3R | 23700655..23700718 | 17..80 | 100 | -> | Plus |
3R | 23700771..23701783 | 81..1093 | 100 | -> | Plus |
3R | 23701879..23702221 | 1094..1436 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:23 Download gff for
BS09560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19528005..19528269 | 1437..1701 | 100 | | Plus |
arm_3R | 19526377..19526440 | 17..80 | 100 | -> | Plus |
arm_3R | 19526493..19527505 | 81..1093 | 100 | -> | Plus |
arm_3R | 19527601..19527943 | 1094..1436 | 100 | -> | Plus |
BS09560.pep Sequence
Translation from 16 to 1701
> BS09560.pep
MGKMFASRGMLVLGVLLVSAIGGQSESIPCKLIDAEHGKVCVCTADYCDY
LENPVLTDENEWFLISSSKQGLRFSTTSDKFGKEEKFTVQDYVEPTQETA
NATILSRLLDKVVDSAFTLESRESSITRTVTLRLDRSKTHQKMVGFGGSY
TGAVEYLVENFKHSELADHLYKSFYAEDGLGFNLMRVSIGGCDFDLEPWS
YAEEEGDTELSDMDELNAHDVTRVAQIKRLIEVSGVKNLLVKGAAWSSPP
WMKTNNRWTGFGRLKRAYYQTWADYHLRWLRLMKDNGIPIWAISTGNEPL
NGIIFMYFVKFMSLGWTPQTQAIWLNDYLGPTIRNSEFKDITLFGNDDQR
YSFPHWFKMMNRTRPNSIDYLDGLSLHWYWDEIFGNSFIEQTKEYAPDKI
LIVSESCIGDKPWQAAAPLLGSWERAEKYARDYLLNIKLGFHGWIDWNIC
LDEIGGPNYVDNTVDAPVIVNTTTFEEFYKQPMFYAIGHFSKWVPEGSVR
IDAVPSNVNLDSVAFLRPDNKITAVLFNSGRADLDITLVDSIRGQFVVNV
PAKSIHTLLYS*
BS09560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31148-PA | 561 | CG31148-PA | 1..561 | 1..561 | 3003 | 100 | Plus |
CG31414-PC | 566 | CG31414-PC | 15..565 | 15..560 | 1431 | 49.2 | Plus |
CG31414-PB | 566 | CG31414-PB | 15..565 | 15..560 | 1431 | 49.2 | Plus |