Clone BS09565 Report

Search the DGRC for BS09565

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG12910-RA
Protein status:BS09565.pep: full length peptide match
Sequenced Size:1433

Clone Sequence Records

BS09565.3prime Sequence

943 bp (794 high quality bases) assembled on 2006-04-19

> BS09565.3prime
ATGGTCTAGAATGCTTCTACACCAGATCGCAGATGCCGCGATTTAGAAAA
ACCTCCAGGCACGTGTTGTCCACTCGATCGAAGAGCAGTGAGCCAAATCT
CCGGGCCGTATAGTCAACGATCAGCACCATCTTGCAATTGATGCACTTGT
CGCGGTAGTGGAACAGTAGGCCCACCGTGGGATGTACCACATGATCGGCG
TATCCGGGTGCGGCGCGGTACACCTGATGGTTGCCCATCTCCACAATGGC
CCTGGCATTCACCACCACCTTGCTTCGTATGTAGGCGGGCAGCACCTCCA
GCGTTCGCCGCACCTTCGACTGGGTGTAGAGCAGTCTGTTGAGAACGTGG
CTGGGGGCGTTGAAGGTGTCGTTACTGTCTCGCCGGTGGAAGAATACGTT
GCGGAAGACGAAGCCCGCGGTGCGGCCCTCGTCGCACTGGCGCAGGTAGT
CCGCCAAGGTGTTGTGCTTCAGCGGCATCACCACCTCGTCCAGGTCCACC
ACTGCCGCGTATCGAAAGTTGTCCACCACATTGGCACGGTACACACAGTC
GTTGAACTGCGCCACGATTCCGGCGTAGTGGACATCCTGCATATGCGCTT
GGACATTCCATTCGAAGACATCGGCCAGGCCAATCCGTTGGTAGTGCTCC
AGCACGCGAAGCACCTCCTCGCTGGCCTCTACGTAGTAGAAGTAGAAGTG
GGTTGCACCCTGCAGGCGGTACATCTCCACGAACTCCACCAGCCGCAGCA
CATTCGAGTAGTTCTCGTGGAGGGGACCCACACACACGGAGATCGTGGGT
CGAGATCGGCCAAACATGTTGGTCATGTTGCGGGGATAACTGATCTGAAT
AAAGGTAGGACTAANGTGACTGAGTCGATTGGACGCGTAGGCCCAGGGCA
CTGCCTGGGGGAAGCGCAAGGGAGAGCGGCGGGAGGCGTGCAG

BS09565.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PA 1401 CG12910-RA 475..1401 943..17 4516 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 1324..2250 943..17 4564 99.5 Minus
CG12910-RB 1705 CG12910-RB 542..1468 943..17 4564 99.5 Minus
CG12910-RA 1702 CG12910-RA 539..1465 943..17 4564 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268143..10268968 842..17 4130 100 Minus
2R 25286936 2R 10267939..10268042 943..840 449 95.2 Minus
Blast to na_te.dros performed 2015-01-30 17:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 582..665 671..759 109 61.8 Plus

BS09565.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:44 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 475..1401 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:03 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 475..1401 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:32:09 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 539..1465 17..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:47 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 539..1465 17..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:47 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10267939..10268042 840..943 95 -> Minus
2R 10268146..10268968 17..839 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:32:09 Download gff for BS09565.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6155444..6155547 840..943 95 -> Minus
arm_2R 6155651..6156473 17..839 100   Minus

BS09565.5prime Sequence

891 bp (805 high quality bases) assembled on 2006-04-19

> BS09565.5prime
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGGCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCCGGAATCGTGGCGCAGTTCAACGACTGTGT

BS09565.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PA 1401 CG12910-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 847..1724 14..891 4390 100 Plus
CG12910-RA 1702 CG12910-RA 62..939 14..891 4390 100 Plus
CG12910-RB 1705 CG12910-RB 176..942 125..891 3835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10267734..10268042 286..594 1545 100 Plus
2R 25286936 2R 10268143..10268442 592..891 1500 100 Plus
2R 25286936 2R 10267100..10267264 125..289 825 100 Plus
2R 25286936 2R 10266917..10267027 14..124 555 100 Plus
Blast to na_te.dros performed 2015-02-11 17:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 582..665 763..675 109 61.8 Minus

BS09565.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:13:45 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:04 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:18 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 58..939 8..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:26 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 58..939 8..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:26 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10268146..10268442 595..891 100   Plus
2R 10266913..10267027 8..124 97 -> Plus
2R 10267100..10267262 125..287 100 -> Plus
2R 10267736..10268042 288..594 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:18 Download gff for BS09565.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154418..6154532 8..124 97 -> Plus
arm_2R 6154605..6154767 125..287 100 -> Plus
arm_2R 6155241..6155547 288..594 100 -> Plus
arm_2R 6155651..6155947 595..891 100   Plus

BS09565.complete Sequence

1433 bp assembled on 2008-08-15

GenBank Submission: FJ636445

> BS09565.complete
GAAGTTATCAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATG
TGTACTTCGCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTC
TACATATCCATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGC
CAAGGCGCAGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACT
ACAGCAACAGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATA
TACTCGGCGTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCAT
GGATGACGAGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGC
CGGAGCGTCTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGAC
TTCTCCAGCCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGT
GCACAACAACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCT
CCCGCCGCTCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCG
TCCAATCGACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCC
CCGCAACATGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGT
GTGTGGGTCCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAG
TTCGTGGAGATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTA
CGTAGAGGCCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGA
TTGGCCTGGCCGATGTCTTCGAATGGAATGTCCAAGCGCATATGCAGGAT
GTCCACTACGCCGGAATCGTGGCGCAGTTCAACGACTGTGTGTACCGTGC
CAATGTGGTGGACAACTTTCGATACGCGGCAGTGGTGGACCTGGACGAGG
TGGTGATGCCGCTGAAGCACAACACCTTGGCGGACTACCTGCGCCAGTGC
GACGAGGGCCGCACCGCGGGCTTCGTCTTCCGCAACGTATTCTTCCACCG
GCGAGACAGTAACGACACCTTCAACGCCCCCAGCCACGTTCTCAACAGAC
TGCTCTACACCCAGTCGAAGGTGCGGCGAACGCTGGAGGTGCTGCCCGCC
TACATACGAAGCAAGGTGGTGGTGAATGCCAGGGCCATTGTGGAGATGGG
CAACCATCAGGTGTACCGCGCCGCACCCGGATACGCCGATCATGTGGTAC
ATCCCACGGTGGGCCTACTGTTCCACTACCGCGACAAGTGCATCAATTGC
AAGATGGTGCTGATCGTTGACTATACGGCCCGGAGATTTGGCTCACTGCT
CTTCGATCGAGTGGACAACACGTGCCTGGAGGTTTTTCTAAATCGCGGCA
TCTGCGATCTGGTGTAGAAGCATTCTAGACCAT

BS09565.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 1401 CG12910-PC 1..1401 17..1417 7005 100 Plus
CG12910-RA 1401 CG12910-PA 1..1401 17..1417 7005 100 Plus
CG12910-RB 1395 CG12910-PB 103..1395 125..1417 6465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-RC 2487 CG12910-RC 847..2250 14..1417 7020 100 Plus
CG12910-RA 1702 CG12910-RA 62..1465 14..1417 7020 100 Plus
CG12910-RB 1705 CG12910-RB 176..1468 125..1417 6465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10268143..10268968 592..1417 4130 100 Plus
2R 25286936 2R 10267734..10268042 286..594 1545 100 Plus
2R 25286936 2R 10267100..10267264 125..289 825 100 Plus
2R 25286936 2R 10266917..10267027 14..124 555 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:39:55 has no hits.

BS09565.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:54:59 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 45..1452 8..1417 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:58 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 65..1465 17..1417 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:10 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 52..1452 17..1417 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:22 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
CG12910-RA 65..1465 17..1417 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:22 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10266920..10267027 17..124 100 -> Plus
2R 10267100..10267262 125..287 100 -> Plus
2R 10267736..10268042 288..594 100 -> Plus
2R 10268146..10268968 595..1417 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:58 Download gff for BS09565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6154425..6154532 17..124 100 -> Plus
arm_2R 6154605..6154767 125..287 100 -> Plus
arm_2R 6155241..6155547 288..594 100 -> Plus
arm_2R 6155651..6156473 595..1417 100   Plus

BS09565.pep Sequence

Translation from 16 to 1416

> BS09565.pep
MLAAPENRFQHVYFALSALVASAMLVLVYISMRSSLNERLREDLAKAQRQ
MIFERPNPHWDYSNSWRRIGNSTLRHEIYSAYFDARTDIVGNVRMDDEQM
TIGSLRIFAILPERLRDSSINCIVRFSDFSSQEIKAEEAGAMHDVHNNTF
AAWSIMCPLHASRRSPLRLPQAVALAYASNRLSHLSPTFIQISYPRNMTN
MFGRSRPTISVCVGPLHENYSNVLRLVEFVEMYRLQGATHFYFYYVEASE
EVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAGIVAQFNDCVYRANVVDN
FRYAAVVDLDEVVMPLKHNTLADYLRQCDEGRTAGFVFRNVFFHRRDSND
TFNAPSHVLNRLLYTQSKVRRTLEVLPAYIRSKVVVNARAIVEMGNHQVY
RAAPGYADHVVHPTVGLLFHYRDKCINCKMVLIVDYTARRFGSLLFDRVD
NTCLEVFLNRGICDLV*

BS09565.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12910-PC 466 CG12910-PC 1..466 1..466 2438 100 Plus
CG12910-PA 466 CG12910-PA 1..466 1..466 2438 100 Plus
CG12910-PB 464 CG12910-PB 18..464 24..466 2274 97.1 Plus
CG9395-PD 840 CG9395-PD 230..697 54..450 324 27 Plus
CG9395-PC 840 CG9395-PC 230..697 54..450 324 27 Plus