Clone Sequence Records
BS09581.3prime Sequence
961 bp (816 high quality bases) assembled on 2006-04-19
> BS09581.3prime
ATGGTCTAGAAAGCTTTCAAAACTTATTGATTCTTCCCGCAAACAAAATA
GTAGAATCCTTATTGATAATGTAATAGTTAAATGGATGCTGGACATGGAA
TTGGACGGGCTGCGGTTCGAACGTGAGCATGGAGGCGTAGCACATGACCA
TTCCCGTGGCGGCCGCAGCCTCCGTTCCCTCCTCGTTGACTTCAATGAAG
GCCTTGTGTATGATGGCTGACACTTTCAATGGCTCCGGACTTTGTAGCAT
TTTTCCAAATTCAGCCTGATCGGAGAACATCCTTGACATGCCCAGCTTCT
GGAAAACCTCAGACAATTCCACTTGGAACTCTGCCTTGAACCTGGGCAAT
TTGAGCGCTACCTTTGTTTCGTACAACGACTGCGTGATCTGCGAGAGGGT
CGTGAGGCGCAACTTCTCCTCCAGAGCGGGCAGACCCGTCTTGGTGTTGG
GCAGTACGATCAGCATAGAGAGGTCTGAGTCCTTGTAGGGCAGTTCCAGA
GCCATGGCATCTAGCGCCGGCAGATCGGCGTAGCGGAACCGCTCCTTTAA
ACTCATCATCGGAACCTGAACTGTTCGCTCCCCATCCAGGTGAAAGGTGT
CTGGGCGGGTTAAGTGTTTGGCGAACTGGTGCTGCCAGGTGCCCTTGAAG
TGAATGGCGTTCACAAGGACGAGTCGCGATTCGGAGTTCAATACATCAGC
CGGCACAAGGTCCTTGATCAGATGGTTGGTGCGCTGCTCAACCCAATTGT
TGATGGTGGCCGCTGCTTGTACATTTTTGGAAAAGTCCACGCTCTGAGCC
GCCGAGAGGAACTGCTTGGATAACAGCTGATCAAACTCCTGGCGCAGCTG
GTAGCCATCCATGACGAAAATCTTTGTGGCGATGCGCAAGATCTGACTGT
CCTGGTANGCGGCCAGCACCTGGTGAAAACTGTGTGCGATTTGCTCTGGG
TCACTAGAGGC
BS09581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 313..1257 | 961..17 | 4656 | 99.6 | Minus |
| CG9453-PE | 1236 | Spn4-RE | 292..1236 | 961..17 | 4656 | 99.6 | Minus |
| CG9453-PF | 1236 | Spn4-RF | 292..1236 | 961..17 | 4656 | 99.6 | Minus |
| CG9453-PH | 1140 | Spn4-RH | 196..1140 | 961..17 | 4656 | 99.6 | Minus |
| CG9453-PK | 1140 | Spn4-RK | 196..1140 | 961..17 | 4656 | 99.6 | Minus |
| CG9453-PB | 1275 | Spn4-RB | 292..1100 | 961..153 | 3976 | 99.6 | Minus |
| CG9453-PA | 1179 | Spn4-RA | 196..1004 | 961..153 | 3976 | 99.6 | Minus |
| CG9453-PD | 1236 | Spn4-RD | 292..1100 | 961..153 | 3976 | 99.6 | Minus |
| CG9453-PG | 1140 | Spn4-RG | 196..1004 | 961..153 | 3976 | 99.6 | Minus |
| CG9453-PI | 1221 | Spn4-RI | 292..1099 | 961..154 | 3971 | 99.6 | Minus |
| CG9453-PJ | 1125 | Spn4-RJ | 196..1003 | 961..154 | 3971 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 836..1781 | 961..16 | 4689 | 99.7 | Minus |
| Spn42Da-RK | 1789 | CG9453-RK | 470..1415 | 961..16 | 4689 | 99.7 | Minus |
| Spn42Da-RH | 1763 | CG9453-RH | 470..1415 | 961..16 | 4689 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878092 | 296..961 | 3289 | 99.5 | Plus |
| 2R | 25286936 | 2R | 6877220..6877364 | 153..297 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 6876596..6876734 | 16..154 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:22:15 has no hits.
BS09581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:16 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-PC | 313..1257 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:45 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PF | 292..1236 | 17..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:14:10 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 470..1418 | 11..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:23:00 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RH | 470..1418 | 11..961 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:23:00 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876593..6876733 | 11..153 | 98 | <- | Plus |
| 2R | 6877221..6877362 | 154..295 | 100 | <- | Plus |
| 2R | 6877427..6878092 | 296..961 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:14:10 Download gff for
BS09581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764726..2764867 | 154..295 | 100 | <- | Plus |
| arm_2R | 2764098..2764238 | 11..153 | 98 | <- | Plus |
| arm_2R | 2764932..2765597 | 296..961 | 99 | | Plus |
BS09581.5prime Sequence
802 bp (801 high quality bases) assembled on 2006-04-19
> BS09581.5prime
GAAGTTATCAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTT
GGATACTTACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTC
CCGTTTCCACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCA
CCAGGAGTTCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCA
AGCTGTCGGGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCC
ATCCAGACTTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGC
TACCCAGCTGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAA
TCGCACACAGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATC
TTGCGCATCGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCA
GGAGTTTGATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCG
TGGACTTTTCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTT
GAGCAGCGCACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATT
GAACTCCGAATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCA
CCTGGCAGCACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCAC
CTGGATGGGGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCG
GTTCCGCTACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGC
CC
BS09581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9453-PC | 1257 | Spn4-RC | 1..786 | 17..802 | 3930 | 100 | Plus |
| CG9453-PB | 1275 | Spn4-RB | 25..765 | 62..802 | 3705 | 100 | Plus |
| CG9453-PD | 1236 | Spn4-RD | 25..765 | 62..802 | 3705 | 100 | Plus |
| CG9453-PE | 1236 | Spn4-RE | 25..765 | 62..802 | 3705 | 100 | Plus |
| CG9453-PF | 1236 | Spn4-RF | 25..765 | 62..802 | 3705 | 100 | Plus |
| CG9453-PI | 1221 | Spn4-RI | 25..765 | 62..802 | 3705 | 100 | Plus |
| CG9453-PA | 1179 | Spn4-RA | 1..669 | 134..802 | 3345 | 100 | Plus |
| CG9453-PG | 1140 | Spn4-RG | 1..669 | 134..802 | 3345 | 100 | Plus |
| CG9453-PH | 1140 | Spn4-RH | 1..669 | 134..802 | 3345 | 100 | Plus |
| CG9453-PJ | 1125 | Spn4-RJ | 1..669 | 134..802 | 3345 | 100 | Plus |
| CG9453-PK | 1140 | Spn4-RK | 1..669 | 134..802 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1309 | 17..802 | 3930 | 100 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..943 | 61..802 | 3710 | 100 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 202..943 | 61..802 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877619..6878404 | 802..17 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:18:53 has no hits.
BS09581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:17 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-PC | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:46 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9453-PC | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:12:33 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1309 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:12 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1309 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:12 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877619..6878404 | 17..802 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:12:33 Download gff for
BS09581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2765124..2765909 | 17..802 | 100 | | Minus |
BS09581.complete Sequence
1289 bp assembled on 2008-08-15
GenBank Submission: FJ636446
> BS09581.complete
GAAGTTATCAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTT
GGATACTTACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTC
CCGTTTCCACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCA
CCAGGAGTTCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCA
AGCTGTCGGGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCC
ATCCAGACTTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGC
TACCCAGCTGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAA
TCGCACACAGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATC
TTGCGCATCGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCA
GGAGTTTGATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCG
TGGACTTTTCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTT
GAGCAGCGCACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATT
GAACTCCGAATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCA
CCTGGCAGCACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCAC
CTGGATGGGGAGCGAACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCG
GTTCCGCTACGCCGATCTGCCGGCGCTAGATGCCATGGCTCTGGAACTGC
CCTACAAGGACTCAGACCTCTCTATGCTGATCGTACTGCCCAACACCAAG
ACGGGTCTGCCCGCTCTGGAGGAGAAGTTGCGCCTCACGACCCTCTCGCA
GATCACGCAGTCGTTGTACGAAACAAAGGTAGCGCTCAAATTGCCCAGGT
TCAAGGCAGAGTTCCAAGTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGC
ATGTCAAGGATGTTCTCCGATCAGGCTGAATTTGGAAAAATGCTACAAAG
TCCGGAGCCATTGAAAGTGTCAGCCATCATACACAAGGCCTTCATTGAAG
TCAACGAGGAGGGAACGGAGGCTGCGGCCGCCACGGGAATGGTCATGTGC
TACGCCTCCATGCTCACGTTCGAACCGCAGCCCGTCCAATTCCATGTCCA
GCATCCATTTAACTATTACATTATCAATAAGGATTCTACTATTTTGTTTG
CGGGAAGAATCAATAAGTTTTGAAAGCTTTCTAGACCAT
BS09581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RF | 1236 | CG9453-PF | 25..1236 | 62..1273 | 6060 | 100 | Plus |
| Spn42Da-RE | 1236 | CG9453-PE | 25..1236 | 62..1273 | 6060 | 100 | Plus |
| Spn42Da-RL | 1140 | CG9453-PL | 1..1140 | 134..1273 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1781 | 17..1274 | 6290 | 100 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..1415 | 61..1274 | 6070 | 100 | Plus |
| Spn42Da-RH | 1763 | CG9453-RH | 202..1415 | 61..1274 | 6070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877427..6878404 | 994..17 | 4890 | 100 | Minus |
| 2R | 25286936 | 2R | 6877220..6877364 | 1137..993 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 6876596..6876734 | 1274..1136 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:36:17 has no hits.
BS09581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:58 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RL | 520..1777 | 17..1274 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:12 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1779 | 17..1272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:58 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RC | 520..1775 | 17..1272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:22 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1779 | 17..1272 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:22 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6876598..6876733 | 1137..1272 | 100 | <- | Minus |
| 2R | 6877221..6877362 | 995..1136 | 100 | <- | Minus |
| 2R | 6877427..6878404 | 17..994 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:12 Download gff for
BS09581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2764726..2764867 | 995..1136 | 100 | <- | Minus |
| arm_2R | 2764103..2764238 | 1137..1272 | 100 | <- | Minus |
| arm_2R | 2764932..2765909 | 17..994 | 100 | | Minus |
BS09581.pep Sequence
Translation from 16 to 1272
> BS09581.pep
MKTSTPHPRSIWILTGCWLLPLLGLALFPFPPVHTADVTMADAAHQEFAR
RLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLGAENETATQLDQ
GLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMDGYQLRQEFDQL
LSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDLVPADVLNSESR
LVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPMMSLKERFRYAD
LPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLRLTTLSQITQSL
YETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEFGKMLQSPEPLK
VSAIIHKAFIEVNEEGTEAAAATGMVMCYASMLTFEPQPVQFHVQHPFNY
YIINKDSTILFAGRINKF*
BS09581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-PF | 411 | CG9453-PF | 9..411 | 16..418 | 2057 | 100 | Plus |
| Spn42Da-PE | 411 | CG9453-PE | 9..411 | 16..418 | 2057 | 100 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 9..410 | 16..417 | 1943 | 95 | Plus |
| Spn42Da-PL | 379 | CG9453-PL | 1..379 | 40..418 | 1921 | 100 | Plus |
| Spn42Da-PK | 379 | CG9453-PK | 1..379 | 40..418 | 1921 | 100 | Plus |
