Clone Sequence Records
BS09586.3prime Sequence
832 bp (824 high quality bases) assembled on 2006-04-19
> BS09586.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCAATTCGGCGCCACTGTTAACAAAA
CCGGCAGTTTGGGTCAACTGCAGTTGGGCCTTCTCCTCCGCCTCCTGGGC
CTTCTGCTCGGGCGTCTTGGCCCATTCCTGCAAATCGCCGGAGCAGTAGA
ACCAGTAAATGACGCAGCCGACGAGGTAAATGCCCGCCGAAATGAAGAAG
ATAATGCGCCATTCGTCACTAGTCTGGTTGGTGACCACGTAGCCCGTTAG
CAGCGGACTCACGATGCCCGGAATGGTGGCAAATGTGTTGCCAATGCCCA
TCAGAACACTGGCGTGCTGGGGCGCAATGTCGAGGTGATTAACGGCAAAT
CCAGACCAGGCGAAGGCACCCAAGCCCACGGCAATGGTCAGACTCACCAC
CGACCACGTGGGATCCAGCAAATAGGCCGTCAGCATCATGAACACCGTCT
GGGCCAGAAAGGCTCCACAGTTGAAGTTCCGCCTAACCTGGGTGGTCGTC
CAAATGCCCTTCACCTGCAGCCAATCAGCCAAATAACCGGACACGGCCAG
CAGGATGCCCATGGCCAGGTATGGAACCGCCGAAAGAATGCCTGTTTTGC
CAAGGTCAAAGTTGAGCGTGTCCCTGAGGAAGCTGGGCAGCTGGGTGAGC
AGGGTGTAGAAGCCCCAGTTCTCCGAGAAATGCGAGGCCATGATGGCATA
AAATGGCATCGACGTGAAGATGGCCCTCCAGGGGTGCTTGACGTGCTTAG
AGCCCACATACCCGATGGTCTTCTGGATGTAGTCGCATTCCTCCTTCGAA
CAGAAGCGATCCAGCTCGGGTCCAGCTTTGAC
BS09586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-PB | 1509 | CG4288-RB | 694..1509 | 832..17 | 4080 | 100 | Minus |
CG4288-PA | 1509 | CG4288-RA | 694..1509 | 832..17 | 4080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-RA | 1968 | CG4288-RA | 971..1786 | 832..17 | 4080 | 100 | Minus |
CG4288-RB | 1846 | CG4288-RB | 849..1664 | 832..17 | 4080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20507574..20507901 | 17..344 | 1640 | 100 | Plus |
3R | 32079331 | 3R | 20507975..20508252 | 345..622 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 20508503..20508713 | 622..832 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:41:17 has no hits.
BS09586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:26 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-PA | 694..1509 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:57 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-PA | 694..1509 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:29:40 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 849..1666 | 13..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:26 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 849..1666 | 13..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:26 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20508503..20508713 | 622..832 | 100 | | Plus |
3R | 20507572..20507901 | 13..344 | 99 | <- | Plus |
3R | 20507975..20508251 | 345..621 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:29:40 Download gff for
BS09586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16333294..16333623 | 13..344 | 99 | <- | Plus |
arm_3R | 16333697..16333973 | 345..621 | 100 | <- | Plus |
arm_3R | 16334225..16334435 | 622..832 | 100 | | Plus |
BS09586.5prime Sequence
894 bp (868 high quality bases) assembled on 2006-04-19
> BS09586.5prime
GAAGTTATCAGTCGACATGACCGACCTGGAGTCTCCGAAGAACGGCAAGC
ACCTGGAGCAGGTGCACCAAAACAACAATGAAATCACGGAGAGTGAACCA
CTCACCTGGCGATTTTGGCGTAAACAGCGCTACATTGTGGTGCTACTGGC
TTTCTTCGGATTCTTCAATGTCTACTCACTGCGAGTGAATCTTTCGGTGG
CCATTGTGGCCATGACCGAGAATCGCACCGTCTTCGATGCCGATGGAAAT
GTGTCCTACCAGCAGGACTTTCCCTGGGACTCCAAGCAGAAGGGCTTGAT
CCTGAGCTCCTTCTTCTACGGCTACATCCTGACACAGTTCCTCGGTGGCT
ACATCGGCACCAAAATTGGTGGCAACATTGTATTTGGTACTGGAATTGGA
AGCACTGCCATTCTGACGCTGCTCACTCCGATGGCTGCCTCGCACAGCTT
GGAAATGTTCCTGTTCGTCCGCATCATCGAGGGCTTCTTCGAGGGCGTCA
CCTTCCCCGGTATTCATGCGGTCTGGGCCCGCTGGTCTCCGCCTTTGGAA
CGATCCCGAATGGCATCGATAGCATTTGCCGGCAACTATGCGGGAACGGT
GGTGGCGATGCCATGCTCCGGATTTCTGGCTACCAAATACGGCTGGGAGA
GCGTATTCTACGTATTCGGCACCATCGGCGTGATCTGGTACATCACTTGG
CTCGTCTTCGTCAAAGCTGGACCCGAGCTGGATCGCTTCTGTTCGAAGGA
GGAATGCGACTACATCCAGAAGACCATCGGGTATGTGGGCTCTAAGCACG
TCAAGCACCCCTGGAGGGCCATCTTCACGTCGATGCCATTTTATGCCATC
ATGGCCTCGCATTTCTCGGAGAACTGGGGCTTCTACACCCTGCT
BS09586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-PB | 1509 | CG4288-RB | 1..878 | 17..894 | 4390 | 100 | Plus |
CG4288-PA | 1509 | CG4288-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-RA | 1968 | CG4288-RA | 278..1155 | 17..894 | 4390 | 100 | Plus |
CG4288-RB | 1846 | CG4288-RB | 156..1033 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20508529..20509043 | 894..380 | 2575 | 100 | Minus |
3R | 32079331 | 3R | 20509148..20509454 | 382..76 | 1535 | 100 | Minus |
3R | 32079331 | 3R | 20510012..20510070 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:44:59 has no hits.
BS09586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:27 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:59 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:14 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 156..1033 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:30 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 156..1033 | 17..894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:30 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20508529..20509043 | 380..894 | 100 | <- | Minus |
3R | 20509151..20509454 | 76..379 | 100 | <- | Minus |
3R | 20510012..20510070 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:14 Download gff for
BS09586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16334251..16334765 | 380..894 | 100 | <- | Minus |
arm_3R | 16334873..16335176 | 76..379 | 100 | <- | Minus |
arm_3R | 16335734..16335792 | 17..75 | 100 | | Minus |
BS09586.complete Sequence
1541 bp (1541 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636447
> BS09586.complete
GAAGTTATCAGTCGACATGACCGACCTGGAGTCTCCGAAGAACGGCAAGC
ACCTGGAGCAGGTGCACCAAAACAACAATGAAATCACGGAGAGTGAACCA
CTCACCTGGCGATTTTGGCGTAAACAGCGCTACATTGTGGTGCTACTGGC
TTTCTTCGGATTCTTCAATGTCTACTCACTGCGAGTGAATCTTTCGGTGG
CCATTGTGGCCATGACCGAGAATCGCACCGTCTTCGATGCCGATGGAAAT
GTGTCCTACCAGCAGGACTTTCCCTGGGACTCCAAGCAGAAGGGCTTGAT
CCTGAGCTCCTTCTTCTACGGCTACATCCTGACACAGTTCCTCGGTGGCT
ACATCGGCACCAAAATTGGTGGCAACATTGTATTTGGTACTGGAATTGGA
AGCACTGCCATTCTGACGCTGCTCACTCCGATGGCTGCCTCGCACAGCTT
GGAAATGTTCCTGTTCGTCCGCATCATCGAGGGCTTCTTCGAGGGCGTCA
CCTTCCCCGGTATTCATGCGGTCTGGGCCCGCTGGTCTCCGCCTTTGGAA
CGATCCCGAATGGCATCGATAGCATTTGCCGGCAACTATGCGGGAACGGT
GGTGGCGATGCCATGCTCCGGATTTCTGGCTACCAAATACGGCTGGGAGA
GCGTATTCTACGTATTCGGCACCATCGGCGTGATCTGGTACATCACTTGG
CTCGTCTTCGTCAAAGCTGGACCCGAGCTGGATCGCTTCTGTTCGAAGGA
GGAATGCGACTACATCCAGAAGACCATCGGGTATGTGGGCTCTAAGCACG
TCAAGCACCCCTGGAGGGCCATCTTCACGTCGATGCCATTTTATGCCATC
ATGGCCTCGCATTTCTCGGAGAACTGGGGCTTCTACACCCTGCTCACCCA
GCTGCCCAGCTTCCTCAGGGACACGCTCAACTTTGACCTTGGCAAAACAG
GCATTCTTTCGGCGGTTCCATACCTGGCCATGGGCATCCTGCTGGCCGTG
TCCGGTTATTTGGCTGATTGGCTGCAGGTGAAGGGCATTTGGACGACCAC
CCAGGTTAGGCGGAACTTCAACTGTGGAGCCTTTCTGGCCCAGACGGTGT
TCATGATGCTGACGGCCTATTTGCTGGATCCCACGTGGTCGGTGGTGAGT
CTGACCATTGCCGTGGGCTTGGGTGCCTTCGCCTGGTCTGGATTTGCCGT
TAATCACCTCGACATTGCGCCCCAGCACGCCAGTGTTCTGATGGGCATTG
GCAACACATTTGCCACCATTCCGGGCATCGTGAGTCCGCTGCTAACGGGC
TACGTGGTCACCAACCAGACTAGTGACGAATGGCGCATTATCTTCTTCAT
TTCGGCGGGCATTTACCTCGTCGGCTGCGTCATTTACTGGTTCTACTGCT
CCGGCGATTTGCAGGAATGGGCCAAGACGCCCGAGCAGAAGGCCCAGGAG
GCGGAGGAGAAGGCCCAACTGCAGTTGACCCAAACTGCCGGTTTTGTTAA
CAGTGGCGCCGAATTGAAGGACTAAAAGCTTTCTAGACCAT
BS09586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-RA | 1509 | CG4288-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
CG4288-RB | 1509 | CG4288-PB | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-RA | 1968 | CG4288-RA | 278..1786 | 17..1525 | 7545 | 100 | Plus |
CG4288-RB | 1846 | CG4288-RB | 156..1664 | 17..1525 | 7545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20508503..20509043 | 920..380 | 2705 | 100 | Minus |
3R | 32079331 | 3R | 20507574..20507901 | 1525..1198 | 1640 | 100 | Minus |
3R | 32079331 | 3R | 20509148..20509454 | 382..76 | 1535 | 100 | Minus |
3R | 32079331 | 3R | 20507975..20508252 | 1197..920 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 20510012..20510070 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:47:48 has no hits.
BS09586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:52 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RA | 1..1509 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:08 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RA | 278..1788 | 17..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:25 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 156..1662 | 17..1523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:52 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RA | 278..1788 | 17..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:30 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4288-RB | 156..1662 | 17..1523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:30 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20507576..20507901 | 1198..1523 | 100 | <- | Minus |
3R | 20507975..20508251 | 921..1197 | 100 | <- | Minus |
3R | 20508503..20509043 | 380..920 | 100 | <- | Minus |
3R | 20509151..20509454 | 76..379 | 100 | <- | Minus |
3R | 20510012..20510070 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:25 Download gff for
BS09586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16333298..16333623 | 1198..1523 | 100 | <- | Minus |
arm_3R | 16333697..16333973 | 921..1197 | 100 | <- | Minus |
arm_3R | 16334225..16334765 | 380..920 | 100 | <- | Minus |
arm_3R | 16334873..16335176 | 76..379 | 100 | <- | Minus |
arm_3R | 16335734..16335792 | 17..75 | 100 | | Minus |
BS09586.pep Sequence
Translation from 16 to 1524
> BS09586.pep
MTDLESPKNGKHLEQVHQNNNEITESEPLTWRFWRKQRYIVVLLAFFGFF
NVYSLRVNLSVAIVAMTENRTVFDADGNVSYQQDFPWDSKQKGLILSSFF
YGYILTQFLGGYIGTKIGGNIVFGTGIGSTAILTLLTPMAASHSLEMFLF
VRIIEGFFEGVTFPGIHAVWARWSPPLERSRMASIAFAGNYAGTVVAMPC
SGFLATKYGWESVFYVFGTIGVIWYITWLVFVKAGPELDRFCSKEECDYI
QKTIGYVGSKHVKHPWRAIFTSMPFYAIMASHFSENWGFYTLLTQLPSFL
RDTLNFDLGKTGILSAVPYLAMGILLAVSGYLADWLQVKGIWTTTQVRRN
FNCGAFLAQTVFMMLTAYLLDPTWSVVSLTIAVGLGAFAWSGFAVNHLDI
APQHASVLMGIGNTFATIPGIVSPLLTGYVVTNQTSDEWRIIFFISAGIY
LVGCVIYWFYCSGDLQEWAKTPEQKAQEAEEKAQLQLTQTAGFVNSGAEL
KD*
BS09586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4288-PA | 502 | CG4288-PA | 1..502 | 1..502 | 2664 | 100 | Plus |
CG4288-PB | 502 | CG4288-PB | 1..502 | 1..502 | 2664 | 100 | Plus |
VGlut-PC | 632 | CG9887-PC | 95..526 | 38..475 | 839 | 38.2 | Plus |
VGlut-PB | 632 | CG9887-PB | 95..526 | 38..475 | 839 | 38.2 | Plus |
VGlut-PA | 632 | CG9887-PA | 95..526 | 38..475 | 839 | 38.2 | Plus |