Clone BS09586 Report

Search the DGRC for BS09586

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG4288-RA
Protein status:BS09586.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09586.3prime Sequence

832 bp (824 high quality bases) assembled on 2006-04-19

> BS09586.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCAATTCGGCGCCACTGTTAACAAAA
CCGGCAGTTTGGGTCAACTGCAGTTGGGCCTTCTCCTCCGCCTCCTGGGC
CTTCTGCTCGGGCGTCTTGGCCCATTCCTGCAAATCGCCGGAGCAGTAGA
ACCAGTAAATGACGCAGCCGACGAGGTAAATGCCCGCCGAAATGAAGAAG
ATAATGCGCCATTCGTCACTAGTCTGGTTGGTGACCACGTAGCCCGTTAG
CAGCGGACTCACGATGCCCGGAATGGTGGCAAATGTGTTGCCAATGCCCA
TCAGAACACTGGCGTGCTGGGGCGCAATGTCGAGGTGATTAACGGCAAAT
CCAGACCAGGCGAAGGCACCCAAGCCCACGGCAATGGTCAGACTCACCAC
CGACCACGTGGGATCCAGCAAATAGGCCGTCAGCATCATGAACACCGTCT
GGGCCAGAAAGGCTCCACAGTTGAAGTTCCGCCTAACCTGGGTGGTCGTC
CAAATGCCCTTCACCTGCAGCCAATCAGCCAAATAACCGGACACGGCCAG
CAGGATGCCCATGGCCAGGTATGGAACCGCCGAAAGAATGCCTGTTTTGC
CAAGGTCAAAGTTGAGCGTGTCCCTGAGGAAGCTGGGCAGCTGGGTGAGC
AGGGTGTAGAAGCCCCAGTTCTCCGAGAAATGCGAGGCCATGATGGCATA
AAATGGCATCGACGTGAAGATGGCCCTCCAGGGGTGCTTGACGTGCTTAG
AGCCCACATACCCGATGGTCTTCTGGATGTAGTCGCATTCCTCCTTCGAA
CAGAAGCGATCCAGCTCGGGTCCAGCTTTGAC

BS09586.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-PB 1509 CG4288-RB 694..1509 832..17 4080 100 Minus
CG4288-PA 1509 CG4288-RA 694..1509 832..17 4080 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-RA 1968 CG4288-RA 971..1786 832..17 4080 100 Minus
CG4288-RB 1846 CG4288-RB 849..1664 832..17 4080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20507574..20507901 17..344 1640 100 Plus
3R 32079331 3R 20507975..20508252 345..622 1390 100 Plus
3R 32079331 3R 20508503..20508713 622..832 1055 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:41:17 has no hits.

BS09586.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:26 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-PA 694..1509 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:57 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-PA 694..1509 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:29:40 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 849..1666 13..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:26 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 849..1666 13..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:26 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20508503..20508713 622..832 100   Plus
3R 20507572..20507901 13..344 99 <- Plus
3R 20507975..20508251 345..621 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:29:40 Download gff for BS09586.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16333294..16333623 13..344 99 <- Plus
arm_3R 16333697..16333973 345..621 100 <- Plus
arm_3R 16334225..16334435 622..832 100   Plus

BS09586.5prime Sequence

894 bp (868 high quality bases) assembled on 2006-04-19

> BS09586.5prime
GAAGTTATCAGTCGACATGACCGACCTGGAGTCTCCGAAGAACGGCAAGC
ACCTGGAGCAGGTGCACCAAAACAACAATGAAATCACGGAGAGTGAACCA
CTCACCTGGCGATTTTGGCGTAAACAGCGCTACATTGTGGTGCTACTGGC
TTTCTTCGGATTCTTCAATGTCTACTCACTGCGAGTGAATCTTTCGGTGG
CCATTGTGGCCATGACCGAGAATCGCACCGTCTTCGATGCCGATGGAAAT
GTGTCCTACCAGCAGGACTTTCCCTGGGACTCCAAGCAGAAGGGCTTGAT
CCTGAGCTCCTTCTTCTACGGCTACATCCTGACACAGTTCCTCGGTGGCT
ACATCGGCACCAAAATTGGTGGCAACATTGTATTTGGTACTGGAATTGGA
AGCACTGCCATTCTGACGCTGCTCACTCCGATGGCTGCCTCGCACAGCTT
GGAAATGTTCCTGTTCGTCCGCATCATCGAGGGCTTCTTCGAGGGCGTCA
CCTTCCCCGGTATTCATGCGGTCTGGGCCCGCTGGTCTCCGCCTTTGGAA
CGATCCCGAATGGCATCGATAGCATTTGCCGGCAACTATGCGGGAACGGT
GGTGGCGATGCCATGCTCCGGATTTCTGGCTACCAAATACGGCTGGGAGA
GCGTATTCTACGTATTCGGCACCATCGGCGTGATCTGGTACATCACTTGG
CTCGTCTTCGTCAAAGCTGGACCCGAGCTGGATCGCTTCTGTTCGAAGGA
GGAATGCGACTACATCCAGAAGACCATCGGGTATGTGGGCTCTAAGCACG
TCAAGCACCCCTGGAGGGCCATCTTCACGTCGATGCCATTTTATGCCATC
ATGGCCTCGCATTTCTCGGAGAACTGGGGCTTCTACACCCTGCT

BS09586.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-PB 1509 CG4288-RB 1..878 17..894 4390 100 Plus
CG4288-PA 1509 CG4288-RA 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-RA 1968 CG4288-RA 278..1155 17..894 4390 100 Plus
CG4288-RB 1846 CG4288-RB 156..1033 17..894 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20508529..20509043 894..380 2575 100 Minus
3R 32079331 3R 20509148..20509454 382..76 1535 100 Minus
3R 32079331 3R 20510012..20510070 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:44:59 has no hits.

BS09586.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:27 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:25:59 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:56:14 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 156..1033 17..894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:31:30 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 156..1033 17..894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:31:30 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20508529..20509043 380..894 100 <- Minus
3R 20509151..20509454 76..379 100 <- Minus
3R 20510012..20510070 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:56:14 Download gff for BS09586.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16334251..16334765 380..894 100 <- Minus
arm_3R 16334873..16335176 76..379 100 <- Minus
arm_3R 16335734..16335792 17..75 100   Minus

BS09586.complete Sequence

1541 bp (1541 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636447

> BS09586.complete
GAAGTTATCAGTCGACATGACCGACCTGGAGTCTCCGAAGAACGGCAAGC
ACCTGGAGCAGGTGCACCAAAACAACAATGAAATCACGGAGAGTGAACCA
CTCACCTGGCGATTTTGGCGTAAACAGCGCTACATTGTGGTGCTACTGGC
TTTCTTCGGATTCTTCAATGTCTACTCACTGCGAGTGAATCTTTCGGTGG
CCATTGTGGCCATGACCGAGAATCGCACCGTCTTCGATGCCGATGGAAAT
GTGTCCTACCAGCAGGACTTTCCCTGGGACTCCAAGCAGAAGGGCTTGAT
CCTGAGCTCCTTCTTCTACGGCTACATCCTGACACAGTTCCTCGGTGGCT
ACATCGGCACCAAAATTGGTGGCAACATTGTATTTGGTACTGGAATTGGA
AGCACTGCCATTCTGACGCTGCTCACTCCGATGGCTGCCTCGCACAGCTT
GGAAATGTTCCTGTTCGTCCGCATCATCGAGGGCTTCTTCGAGGGCGTCA
CCTTCCCCGGTATTCATGCGGTCTGGGCCCGCTGGTCTCCGCCTTTGGAA
CGATCCCGAATGGCATCGATAGCATTTGCCGGCAACTATGCGGGAACGGT
GGTGGCGATGCCATGCTCCGGATTTCTGGCTACCAAATACGGCTGGGAGA
GCGTATTCTACGTATTCGGCACCATCGGCGTGATCTGGTACATCACTTGG
CTCGTCTTCGTCAAAGCTGGACCCGAGCTGGATCGCTTCTGTTCGAAGGA
GGAATGCGACTACATCCAGAAGACCATCGGGTATGTGGGCTCTAAGCACG
TCAAGCACCCCTGGAGGGCCATCTTCACGTCGATGCCATTTTATGCCATC
ATGGCCTCGCATTTCTCGGAGAACTGGGGCTTCTACACCCTGCTCACCCA
GCTGCCCAGCTTCCTCAGGGACACGCTCAACTTTGACCTTGGCAAAACAG
GCATTCTTTCGGCGGTTCCATACCTGGCCATGGGCATCCTGCTGGCCGTG
TCCGGTTATTTGGCTGATTGGCTGCAGGTGAAGGGCATTTGGACGACCAC
CCAGGTTAGGCGGAACTTCAACTGTGGAGCCTTTCTGGCCCAGACGGTGT
TCATGATGCTGACGGCCTATTTGCTGGATCCCACGTGGTCGGTGGTGAGT
CTGACCATTGCCGTGGGCTTGGGTGCCTTCGCCTGGTCTGGATTTGCCGT
TAATCACCTCGACATTGCGCCCCAGCACGCCAGTGTTCTGATGGGCATTG
GCAACACATTTGCCACCATTCCGGGCATCGTGAGTCCGCTGCTAACGGGC
TACGTGGTCACCAACCAGACTAGTGACGAATGGCGCATTATCTTCTTCAT
TTCGGCGGGCATTTACCTCGTCGGCTGCGTCATTTACTGGTTCTACTGCT
CCGGCGATTTGCAGGAATGGGCCAAGACGCCCGAGCAGAAGGCCCAGGAG
GCGGAGGAGAAGGCCCAACTGCAGTTGACCCAAACTGCCGGTTTTGTTAA
CAGTGGCGCCGAATTGAAGGACTAAAAGCTTTCTAGACCAT

BS09586.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-RA 1509 CG4288-PA 1..1509 17..1525 7545 100 Plus
CG4288-RB 1509 CG4288-PB 1..1509 17..1525 7545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-RA 1968 CG4288-RA 278..1786 17..1525 7545 100 Plus
CG4288-RB 1846 CG4288-RB 156..1664 17..1525 7545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20508503..20509043 920..380 2705 100 Minus
3R 32079331 3R 20507574..20507901 1525..1198 1640 100 Minus
3R 32079331 3R 20509148..20509454 382..76 1535 100 Minus
3R 32079331 3R 20507975..20508252 1197..920 1390 100 Minus
3R 32079331 3R 20510012..20510070 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:47:48 has no hits.

BS09586.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:52 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
CG4288-RA 1..1509 17..1525 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:08 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
CG4288-RA 278..1788 17..1529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:25 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 156..1662 17..1523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:52 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
CG4288-RA 278..1788 17..1529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:30 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
CG4288-RB 156..1662 17..1523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:30 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20507576..20507901 1198..1523 100 <- Minus
3R 20507975..20508251 921..1197 100 <- Minus
3R 20508503..20509043 380..920 100 <- Minus
3R 20509151..20509454 76..379 100 <- Minus
3R 20510012..20510070 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:25 Download gff for BS09586.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16333298..16333623 1198..1523 100 <- Minus
arm_3R 16333697..16333973 921..1197 100 <- Minus
arm_3R 16334225..16334765 380..920 100 <- Minus
arm_3R 16334873..16335176 76..379 100 <- Minus
arm_3R 16335734..16335792 17..75 100   Minus

BS09586.pep Sequence

Translation from 16 to 1524

> BS09586.pep
MTDLESPKNGKHLEQVHQNNNEITESEPLTWRFWRKQRYIVVLLAFFGFF
NVYSLRVNLSVAIVAMTENRTVFDADGNVSYQQDFPWDSKQKGLILSSFF
YGYILTQFLGGYIGTKIGGNIVFGTGIGSTAILTLLTPMAASHSLEMFLF
VRIIEGFFEGVTFPGIHAVWARWSPPLERSRMASIAFAGNYAGTVVAMPC
SGFLATKYGWESVFYVFGTIGVIWYITWLVFVKAGPELDRFCSKEECDYI
QKTIGYVGSKHVKHPWRAIFTSMPFYAIMASHFSENWGFYTLLTQLPSFL
RDTLNFDLGKTGILSAVPYLAMGILLAVSGYLADWLQVKGIWTTTQVRRN
FNCGAFLAQTVFMMLTAYLLDPTWSVVSLTIAVGLGAFAWSGFAVNHLDI
APQHASVLMGIGNTFATIPGIVSPLLTGYVVTNQTSDEWRIIFFISAGIY
LVGCVIYWFYCSGDLQEWAKTPEQKAQEAEEKAQLQLTQTAGFVNSGAEL
KD*

BS09586.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4288-PA 502 CG4288-PA 1..502 1..502 2664 100 Plus
CG4288-PB 502 CG4288-PB 1..502 1..502 2664 100 Plus
VGlut-PC 632 CG9887-PC 95..526 38..475 839 38.2 Plus
VGlut-PB 632 CG9887-PB 95..526 38..475 839 38.2 Plus
VGlut-PA 632 CG9887-PA 95..526 38..475 839 38.2 Plus