Clone Sequence Records
BS09589.3prime Sequence
899 bp (877 high quality bases) assembled on 2006-04-19
> BS09589.3prime
ATGGTCTAGAAAGCTTCTAATCGATGTCGATTTTATAGCCCAGATCTATG
GAGGCCCTTATGTGCTCCTTCAGGTTTATGTAGCCATTGCGCAGGGACTC
CTGCGTGAGGAACTCCTTCACCTTGTTCTCGCTCTCGCAGAACACGAGGT
TGTCCGTGTTATCGATGAGCCTCTGCAGGTGTTCGGGAAATCTGAAGAGG
ATCAGCAGCGTGGAGCTAGAGGCATCTGCCTGGCGGCACAGATCACTGGA
TAACTTCGATATACCCTGTGCAGCCGTATAATCCATGCCACTAATGCGCT
GACCATCGATCACGACCGTAATGCGAAAGTCCGCTTGCTCGCAGGCCTTG
AGCACTCGCTCCCGCAGATAATTGATGGCCGGAAAGTAGATGCCATTGCT
TGGCGTCACCCGGATGTACTGCATCTCGTCCAGTTGCTCAATTTTCACCC
GGATCTCGGGGCGTGCCCACAGGAAGAGCAGGTGCAGAGCGGTCACCACA
ATGCTCACGAACAGACCCACCTCCACGCCAAAGAGCACACTAACACAAAA
GCACAGCAACCAGGTGGCAAAGTCGCGCTTTGAATCCCGCCACAATCGCA
TCGGCAGCTTGAAGTCGAGCAGCGTGAATATGGAGCATATCAGGATGGCC
GCCAGCGTCGCTTCCGGAATGTAGTTGAAGTACGGACTCAGATAGCTCAG
AGCAAGCAGCACAATAATGCCCAAATACAGATTGGCCATGGGAGTCCTAA
GGCCACACGCTGTGCTAATGGCATATCGGGTAAACGCTCCTGATGATGGC
ATCGCCTGTACGCAGGATCCAAACATGTTGCAGAGGCCCACGGTGAGTAG
TTCCTGATTGGTATCCCACCATCCTTTAGGAGTCAATTTTCCAATGGAT
BS09589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-PA | 1884 | CG5404-RA | 1035..1884 | 866..17 | 4250 | 100 | Minus |
CG5404-PA | 1884 | CG5404-RA | 1002..1030 | 899..871 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-RA | 2762 | CG5404-RA | 1080..1962 | 899..17 | 4370 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15706930..15707634 | 721..17 | 3525 | 100 | Minus |
3R | 32079331 | 3R | 15706572..15706734 | 882..720 | 770 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:03:06 has no hits.
BS09589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:32 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-PA | 1002..1884 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:06 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-PA | 1002..1884 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:32:18 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 1080..1962 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:52 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 1080..1962 | 17..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:52 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15706497..15706513 | 883..899 | 100 | -> | Minus |
3R | 15706572..15706733 | 721..882 | 98 | -> | Minus |
3R | 15706931..15707634 | 17..720 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:32:18 Download gff for
BS09589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11532294..11532455 | 721..882 | 98 | -> | Minus |
arm_3R | 11532219..11532235 | 883..899 | 100 | -> | Minus |
arm_3R | 11532653..11533356 | 17..720 | 100 | | Minus |
BS09589.5prime Sequence
868 bp (745 high quality bases) assembled on 2006-04-19
> BS09589.5prime
GAAGTTATCAGTCGACATGTATCCGCAACTGGAAACAGAAGCGGAGGCTC
TGGAAAAGGCTACGGCACGGGCTCTTTTACCAGGTGCCATCAGCAAGCCC
GCCAGTGAAGCTGGCAAGGCTCCCAGGATGAACAAATGGAAGCGCCGCCT
GCATCGCCACGTCCCGGTCTTTCAATGGCTTCCCCTGTACAGCACCGAAT
GGGGCATCGACGACTTTATAGCCGGCATCACCCTGGGACTCACAATCATA
CCCGAAAGTATGGCCTGTGCCCTTCTGGCTGGCCTCCCCGCTCGATATGG
TCTCTGTTCGGCGTTTATTGGACCGCTGATCTATATGGTCTTCGGATCGA
TCGACAAGGTCATCATTGGACCCACTAGCTTAGTGGCTCTGGTCAGTGTC
CAGTTCACCGTGGGACGACCCATCGAGTTCGCCTTTCTGCTCACCTTTCT
CAGCGGAATTGTACAGATCATCATGGGTACAATGAGAATGGGATTCATTT
TCGAATTCATCTCCATGCCGGTGATCAAAGCCTTTTCCTCGGCCACTGCC
ATTTTGGTAATAGAATCCCAGCTGAAAGTACTACTAGGCATCAAATACTT
AGTGGCCGGGCTAATGAACTCGGTTGGTATGCTAAGTTCCCGCATTGAAG
AGTCGAATATGGCTGATCTCATCATGGGCGTTTGTGCCATAGTTTTCCTG
CTCTTACTAGAGTTATTGGACCGTGTGGCCAACAATGAGAAGCGAAACAA
AATTCTAAGGATATTCTGTCGATATCTATCCACATCTAGGAACACACTAA
TTGTACTCATCGCAGCCATCGTTTCGTTTATTTGGATTCAAAAATGTGGT
CAGGTTCCCTATGCTCTT
BS09589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-PA | 1884 | CG5404-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-RA | 2762 | CG5404-RA | 79..930 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15704754..15705229 | 17..492 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 15705916..15706137 | 491..712 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 15706190..15706347 | 711..868 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:56:04 has no hits.
BS09589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:33 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:08 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:33 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 72..930 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:03 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 72..930 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:03 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15704747..15705228 | 9..491 | 99 | -> | Plus |
3R | 15705917..15706137 | 492..712 | 100 | -> | Plus |
3R | 15706192..15706347 | 713..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:33 Download gff for
BS09589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11530469..11530950 | 9..491 | 99 | -> | Plus |
arm_3R | 11531639..11531859 | 492..712 | 100 | -> | Plus |
arm_3R | 11531914..11532069 | 713..868 | 100 | | Plus |
BS09589.complete Sequence
1916 bp assembled on 2009-08-26
GenBank Submission: KX800659
> BS09589.complete
GAAGTTATCAGTCGACATGTATCCGCAACTGGAAACAGAAGCGGAGGCTC
TGGAAAAGGCTACGGCACGGGCTCTTTTACCAGGTGCCATCAGCAAGCCC
GCCAGTGAAGCTGGCAAGGCTCCCAGGATGAACAAATGGAAGCGCCGCCT
GCATCGCCACGTCCCGGTCTTTCAATGGCTTCCCCTGTACAGCACCGAAT
GGGGCATCGACGACTTTATAGCCGGCATCACCCTGGGACTCACAATCATA
CCCGAAAGTATGGCCTGTGCCCTTCTGGCTGGCCTCCCCGCTCGATATGG
TCTCTGTTCGGCGTTTATTGGACCGCTGATCTATATGGTCTTCGGATCGA
TCGACAAGGTCATCATTGGACCCACTAGCTTAGTGGCTCTGGTCAGTGTC
CAGTTCACCGTGGGACGACCCATCGAGTTCGCCTTTCTGCTCACCTTTCT
CAGCGGAATTGTACAGATCATCATGGGTACAATGAGAATGGGATTCATTT
TCGAATTCATCTCCATGCCGGTGATCAAAGCCTTTTCCTCGGCCACTGCC
ATTTTGGTAATAGAATCCCAGCTGAAAGTACTACTAGGCATCAAATACTT
AGTGGCCGGGCTAATGAACTCGGTTGGTATGCTAAGTTCCCGCATTGAAG
AGTCGAATATGGCTGATCTCATCATGGGCGTTTGTGCCATAGTTTTCCTG
CTCTTACTAGAGTTATTGGACCGTGTGGCCAACAATGAGAAGCGAAACAA
AATTCTAAGGATATTCTGTCGATATCTATCCACATCTAGGAACACACTAA
TTGTACTCATCGCAGCCATCGTTTCGTTTATTTGGATTCAAAAATGTGGT
CAGGTTCCCTATGCTCTTAGCAAGAATGCTCTGTCCACTCTTCCCAATTT
TACAGTGCCCAGTTTCCACATTGAAACTGCCGAGCGCAACTATAGTATTT
GGGAAGTTTTAAAAGAGTTGAATATTGGAATAATAGTTATTCCAATTGTG
GGCATACTAACGAATATATCCATTGGAAAATTGACTCCTAAAGGATTGGT
GGATACCAATCAGGAACTACTCACCGTGGGCCTCTGCAACATGTTTGGAT
CCTGCGTACAGGCGATGCCATCATCAGGAGCGTTTACCCGATATGCCATT
AGCACAGCGTGTGGCCTTAGGACTCCCATGGCCAATCTGTATTTGGGCAT
TATTGTGCTGCTTGCTCTGAGCTATCTGAGTCCGTACTTCAACTACATTC
CGGAAGCGACGCTGGCGGCCATCCTGATATGCTCCATATTCACGCTGCTC
GACTTCAAGCTGCCGATGCGATTGTGGCGGGATTCAAAGCGCGACTTTGC
CACCTGGTTGCTGTGCTTTTGTGTTAGTGTGCTCTTTGGCGTGGAGGTGG
GTCTGTTCGTGAGCATTGTGGTGACCGCTCTGCACCTGCTCTTCCTGTGG
GCACGCCCCGAGATCCGGGTGAAAATTGAGCAACTGGACGAGATGCAGTA
CATCCGGGTGACGCCAAGCAATGGCATCTACTTTCCGGCCATCAATTATC
TGCGGGAGCGAGTGCTCAAGGCCTGCGAGCAAGCGGACTTTCGCATTACG
GTCGTGATCGATGGTCAGCGCATTAGTGGCATGGATTATACGGCTGCACA
GGGTATATCGAAGTTATCCAGTGATCTGTGCCGCCAGGCAGATGCCTCTA
GCTCCACGCTGCTGATCCTCTTCAGATTTCCCGAACACCTGCAGAGGCTC
ATCGATAACACGGACAACCTCGTGTTCTGCGAGAGCGAGAACAAGGTGAA
GGAGTTCCTCACGCAGGAGTCCCTGCGCAATGGCTACATAAACCTGAAGG
AGCACATAAGGGCCTCCATAGATCTGGGCTATAAAATCGACATCGATTAG
AAGCTTTCTAGACCAT
BS09589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-RA | 1884 | CG5404-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-RA | 2762 | CG5404-RA | 79..1962 | 17..1900 | 9420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15706930..15707634 | 1196..1900 | 3525 | 100 | Plus |
3R | 32079331 | 3R | 15704754..15705229 | 17..492 | 2380 | 100 | Plus |
3R | 32079331 | 3R | 15706190..15706513 | 711..1034 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 15705916..15706137 | 491..712 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 15706572..15706734 | 1035..1197 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:35:08 has no hits.
BS09589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:28 Download gff for
BS09589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 60..1943 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:51 Download gff for
BS09589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 79..1962 | 17..1900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:04 Download gff for
BS09589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5404-RA | 79..1962 | 17..1900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:04 Download gff for
BS09589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15706192..15706513 | 713..1034 | 100 | -> | Plus |
3R | 15706572..15706733 | 1035..1196 | 100 | -> | Plus |
3R | 15704754..15705228 | 17..491 | 100 | -> | Plus |
3R | 15705917..15706137 | 492..712 | 100 | -> | Plus |
3R | 15706931..15707634 | 1197..1900 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:51 Download gff for
BS09589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11530476..11530950 | 17..491 | 100 | -> | Plus |
arm_3R | 11531639..11531859 | 492..712 | 100 | -> | Plus |
arm_3R | 11531914..11532235 | 713..1034 | 100 | -> | Plus |
arm_3R | 11532294..11532455 | 1035..1196 | 100 | -> | Plus |
arm_3R | 11532653..11533356 | 1197..1900 | 100 | | Plus |
BS09589.pep Sequence
Translation from 16 to 1899
> BS09589.pep
MYPQLETEAEALEKATARALLPGAISKPASEAGKAPRMNKWKRRLHRHVP
VFQWLPLYSTEWGIDDFIAGITLGLTIIPESMACALLAGLPARYGLCSAF
IGPLIYMVFGSIDKVIIGPTSLVALVSVQFTVGRPIEFAFLLTFLSGIVQ
IIMGTMRMGFIFEFISMPVIKAFSSATAILVIESQLKVLLGIKYLVAGLM
NSVGMLSSRIEESNMADLIMGVCAIVFLLLLELLDRVANNEKRNKILRIF
CRYLSTSRNTLIVLIAAIVSFIWIQKCGQVPYALSKNALSTLPNFTVPSF
HIETAERNYSIWEVLKELNIGIIVIPIVGILTNISIGKLTPKGLVDTNQE
LLTVGLCNMFGSCVQAMPSSGAFTRYAISTACGLRTPMANLYLGIIVLLA
LSYLSPYFNYIPEATLAAILICSIFTLLDFKLPMRLWRDSKRDFATWLLC
FCVSVLFGVEVGLFVSIVVTALHLLFLWARPEIRVKIEQLDEMQYIRVTP
SNGIYFPAINYLRERVLKACEQADFRITVVIDGQRISGMDYTAAQGISKL
SSDLCRQADASSSTLLILFRFPEHLQRLIDNTDNLVFCESENKVKEFLTQ
ESLRNGYINLKEHIRASIDLGYKIDID*
BS09589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5404-PA | 627 | CG5404-PA | 1..627 | 1..627 | 3173 | 100 | Plus |
CG6125-PC | 611 | CG6125-PC | 45..601 | 36..601 | 1035 | 38.9 | Plus |
CG6125-PB | 611 | CG6125-PB | 45..601 | 36..601 | 1035 | 38.9 | Plus |
CG6125-PA | 640 | CG6125-PA | 74..630 | 36..601 | 1035 | 38.9 | Plus |
CG6928-PD | 579 | CG6928-PD | 3..533 | 38..556 | 803 | 32.7 | Plus |