Clone BS09589 Report

Search the DGRC for BS09589

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG5404-RA
Protein status:BS09589.pep: full length peptide match
Sequenced Size:1916

Clone Sequence Records

BS09589.3prime Sequence

899 bp (877 high quality bases) assembled on 2006-04-19

> BS09589.3prime
ATGGTCTAGAAAGCTTCTAATCGATGTCGATTTTATAGCCCAGATCTATG
GAGGCCCTTATGTGCTCCTTCAGGTTTATGTAGCCATTGCGCAGGGACTC
CTGCGTGAGGAACTCCTTCACCTTGTTCTCGCTCTCGCAGAACACGAGGT
TGTCCGTGTTATCGATGAGCCTCTGCAGGTGTTCGGGAAATCTGAAGAGG
ATCAGCAGCGTGGAGCTAGAGGCATCTGCCTGGCGGCACAGATCACTGGA
TAACTTCGATATACCCTGTGCAGCCGTATAATCCATGCCACTAATGCGCT
GACCATCGATCACGACCGTAATGCGAAAGTCCGCTTGCTCGCAGGCCTTG
AGCACTCGCTCCCGCAGATAATTGATGGCCGGAAAGTAGATGCCATTGCT
TGGCGTCACCCGGATGTACTGCATCTCGTCCAGTTGCTCAATTTTCACCC
GGATCTCGGGGCGTGCCCACAGGAAGAGCAGGTGCAGAGCGGTCACCACA
ATGCTCACGAACAGACCCACCTCCACGCCAAAGAGCACACTAACACAAAA
GCACAGCAACCAGGTGGCAAAGTCGCGCTTTGAATCCCGCCACAATCGCA
TCGGCAGCTTGAAGTCGAGCAGCGTGAATATGGAGCATATCAGGATGGCC
GCCAGCGTCGCTTCCGGAATGTAGTTGAAGTACGGACTCAGATAGCTCAG
AGCAAGCAGCACAATAATGCCCAAATACAGATTGGCCATGGGAGTCCTAA
GGCCACACGCTGTGCTAATGGCATATCGGGTAAACGCTCCTGATGATGGC
ATCGCCTGTACGCAGGATCCAAACATGTTGCAGAGGCCCACGGTGAGTAG
TTCCTGATTGGTATCCCACCATCCTTTAGGAGTCAATTTTCCAATGGAT

BS09589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-PA 1884 CG5404-RA 1035..1884 866..17 4250 100 Minus
CG5404-PA 1884 CG5404-RA 1002..1030 899..871 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-RA 2762 CG5404-RA 1080..1962 899..17 4370 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15706930..15707634 721..17 3525 100 Minus
3R 32079331 3R 15706572..15706734 882..720 770 98.2 Minus
Blast to na_te.dros performed on 2015-01-30 17:03:06 has no hits.

BS09589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:32 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-PA 1002..1884 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:06 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-PA 1002..1884 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:32:18 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 1080..1962 17..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:56:52 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 1080..1962 17..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:56:52 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15706497..15706513 883..899 100 -> Minus
3R 15706572..15706733 721..882 98 -> Minus
3R 15706931..15707634 17..720 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:32:18 Download gff for BS09589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11532294..11532455 721..882 98 -> Minus
arm_3R 11532219..11532235 883..899 100 -> Minus
arm_3R 11532653..11533356 17..720 100   Minus

BS09589.5prime Sequence

868 bp (745 high quality bases) assembled on 2006-04-19

> BS09589.5prime
GAAGTTATCAGTCGACATGTATCCGCAACTGGAAACAGAAGCGGAGGCTC
TGGAAAAGGCTACGGCACGGGCTCTTTTACCAGGTGCCATCAGCAAGCCC
GCCAGTGAAGCTGGCAAGGCTCCCAGGATGAACAAATGGAAGCGCCGCCT
GCATCGCCACGTCCCGGTCTTTCAATGGCTTCCCCTGTACAGCACCGAAT
GGGGCATCGACGACTTTATAGCCGGCATCACCCTGGGACTCACAATCATA
CCCGAAAGTATGGCCTGTGCCCTTCTGGCTGGCCTCCCCGCTCGATATGG
TCTCTGTTCGGCGTTTATTGGACCGCTGATCTATATGGTCTTCGGATCGA
TCGACAAGGTCATCATTGGACCCACTAGCTTAGTGGCTCTGGTCAGTGTC
CAGTTCACCGTGGGACGACCCATCGAGTTCGCCTTTCTGCTCACCTTTCT
CAGCGGAATTGTACAGATCATCATGGGTACAATGAGAATGGGATTCATTT
TCGAATTCATCTCCATGCCGGTGATCAAAGCCTTTTCCTCGGCCACTGCC
ATTTTGGTAATAGAATCCCAGCTGAAAGTACTACTAGGCATCAAATACTT
AGTGGCCGGGCTAATGAACTCGGTTGGTATGCTAAGTTCCCGCATTGAAG
AGTCGAATATGGCTGATCTCATCATGGGCGTTTGTGCCATAGTTTTCCTG
CTCTTACTAGAGTTATTGGACCGTGTGGCCAACAATGAGAAGCGAAACAA
AATTCTAAGGATATTCTGTCGATATCTATCCACATCTAGGAACACACTAA
TTGTACTCATCGCAGCCATCGTTTCGTTTATTTGGATTCAAAAATGTGGT
CAGGTTCCCTATGCTCTT

BS09589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-PA 1884 CG5404-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-RA 2762 CG5404-RA 79..930 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15704754..15705229 17..492 2380 100 Plus
3R 32079331 3R 15705916..15706137 491..712 1110 100 Plus
3R 32079331 3R 15706190..15706347 711..868 790 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:56:04 has no hits.

BS09589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:33 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:08 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:22:33 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 72..930 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:03 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 72..930 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:03 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15704747..15705228 9..491 99 -> Plus
3R 15705917..15706137 492..712 100 -> Plus
3R 15706192..15706347 713..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:22:33 Download gff for BS09589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11530469..11530950 9..491 99 -> Plus
arm_3R 11531639..11531859 492..712 100 -> Plus
arm_3R 11531914..11532069 713..868 100   Plus

BS09589.complete Sequence

1916 bp assembled on 2009-08-26

GenBank Submission: KX800659

> BS09589.complete
GAAGTTATCAGTCGACATGTATCCGCAACTGGAAACAGAAGCGGAGGCTC
TGGAAAAGGCTACGGCACGGGCTCTTTTACCAGGTGCCATCAGCAAGCCC
GCCAGTGAAGCTGGCAAGGCTCCCAGGATGAACAAATGGAAGCGCCGCCT
GCATCGCCACGTCCCGGTCTTTCAATGGCTTCCCCTGTACAGCACCGAAT
GGGGCATCGACGACTTTATAGCCGGCATCACCCTGGGACTCACAATCATA
CCCGAAAGTATGGCCTGTGCCCTTCTGGCTGGCCTCCCCGCTCGATATGG
TCTCTGTTCGGCGTTTATTGGACCGCTGATCTATATGGTCTTCGGATCGA
TCGACAAGGTCATCATTGGACCCACTAGCTTAGTGGCTCTGGTCAGTGTC
CAGTTCACCGTGGGACGACCCATCGAGTTCGCCTTTCTGCTCACCTTTCT
CAGCGGAATTGTACAGATCATCATGGGTACAATGAGAATGGGATTCATTT
TCGAATTCATCTCCATGCCGGTGATCAAAGCCTTTTCCTCGGCCACTGCC
ATTTTGGTAATAGAATCCCAGCTGAAAGTACTACTAGGCATCAAATACTT
AGTGGCCGGGCTAATGAACTCGGTTGGTATGCTAAGTTCCCGCATTGAAG
AGTCGAATATGGCTGATCTCATCATGGGCGTTTGTGCCATAGTTTTCCTG
CTCTTACTAGAGTTATTGGACCGTGTGGCCAACAATGAGAAGCGAAACAA
AATTCTAAGGATATTCTGTCGATATCTATCCACATCTAGGAACACACTAA
TTGTACTCATCGCAGCCATCGTTTCGTTTATTTGGATTCAAAAATGTGGT
CAGGTTCCCTATGCTCTTAGCAAGAATGCTCTGTCCACTCTTCCCAATTT
TACAGTGCCCAGTTTCCACATTGAAACTGCCGAGCGCAACTATAGTATTT
GGGAAGTTTTAAAAGAGTTGAATATTGGAATAATAGTTATTCCAATTGTG
GGCATACTAACGAATATATCCATTGGAAAATTGACTCCTAAAGGATTGGT
GGATACCAATCAGGAACTACTCACCGTGGGCCTCTGCAACATGTTTGGAT
CCTGCGTACAGGCGATGCCATCATCAGGAGCGTTTACCCGATATGCCATT
AGCACAGCGTGTGGCCTTAGGACTCCCATGGCCAATCTGTATTTGGGCAT
TATTGTGCTGCTTGCTCTGAGCTATCTGAGTCCGTACTTCAACTACATTC
CGGAAGCGACGCTGGCGGCCATCCTGATATGCTCCATATTCACGCTGCTC
GACTTCAAGCTGCCGATGCGATTGTGGCGGGATTCAAAGCGCGACTTTGC
CACCTGGTTGCTGTGCTTTTGTGTTAGTGTGCTCTTTGGCGTGGAGGTGG
GTCTGTTCGTGAGCATTGTGGTGACCGCTCTGCACCTGCTCTTCCTGTGG
GCACGCCCCGAGATCCGGGTGAAAATTGAGCAACTGGACGAGATGCAGTA
CATCCGGGTGACGCCAAGCAATGGCATCTACTTTCCGGCCATCAATTATC
TGCGGGAGCGAGTGCTCAAGGCCTGCGAGCAAGCGGACTTTCGCATTACG
GTCGTGATCGATGGTCAGCGCATTAGTGGCATGGATTATACGGCTGCACA
GGGTATATCGAAGTTATCCAGTGATCTGTGCCGCCAGGCAGATGCCTCTA
GCTCCACGCTGCTGATCCTCTTCAGATTTCCCGAACACCTGCAGAGGCTC
ATCGATAACACGGACAACCTCGTGTTCTGCGAGAGCGAGAACAAGGTGAA
GGAGTTCCTCACGCAGGAGTCCCTGCGCAATGGCTACATAAACCTGAAGG
AGCACATAAGGGCCTCCATAGATCTGGGCTATAAAATCGACATCGATTAG
AAGCTTTCTAGACCAT

BS09589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-RA 1884 CG5404-PA 1..1884 17..1900 9420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-RA 2762 CG5404-RA 79..1962 17..1900 9420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15706930..15707634 1196..1900 3525 100 Plus
3R 32079331 3R 15704754..15705229 17..492 2380 100 Plus
3R 32079331 3R 15706190..15706513 711..1034 1620 100 Plus
3R 32079331 3R 15705916..15706137 491..712 1110 100 Plus
3R 32079331 3R 15706572..15706734 1035..1197 815 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:35:08 has no hits.

BS09589.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:28 Download gff for BS09589.complete
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 60..1943 17..1900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:51 Download gff for BS09589.complete
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 79..1962 17..1900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:04 Download gff for BS09589.complete
Subject Subject Range Query Range Percent Splice Strand
CG5404-RA 79..1962 17..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:04 Download gff for BS09589.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15706192..15706513 713..1034 100 -> Plus
3R 15706572..15706733 1035..1196 100 -> Plus
3R 15704754..15705228 17..491 100 -> Plus
3R 15705917..15706137 492..712 100 -> Plus
3R 15706931..15707634 1197..1900 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:51 Download gff for BS09589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11530476..11530950 17..491 100 -> Plus
arm_3R 11531639..11531859 492..712 100 -> Plus
arm_3R 11531914..11532235 713..1034 100 -> Plus
arm_3R 11532294..11532455 1035..1196 100 -> Plus
arm_3R 11532653..11533356 1197..1900 100   Plus

BS09589.pep Sequence

Translation from 16 to 1899

> BS09589.pep
MYPQLETEAEALEKATARALLPGAISKPASEAGKAPRMNKWKRRLHRHVP
VFQWLPLYSTEWGIDDFIAGITLGLTIIPESMACALLAGLPARYGLCSAF
IGPLIYMVFGSIDKVIIGPTSLVALVSVQFTVGRPIEFAFLLTFLSGIVQ
IIMGTMRMGFIFEFISMPVIKAFSSATAILVIESQLKVLLGIKYLVAGLM
NSVGMLSSRIEESNMADLIMGVCAIVFLLLLELLDRVANNEKRNKILRIF
CRYLSTSRNTLIVLIAAIVSFIWIQKCGQVPYALSKNALSTLPNFTVPSF
HIETAERNYSIWEVLKELNIGIIVIPIVGILTNISIGKLTPKGLVDTNQE
LLTVGLCNMFGSCVQAMPSSGAFTRYAISTACGLRTPMANLYLGIIVLLA
LSYLSPYFNYIPEATLAAILICSIFTLLDFKLPMRLWRDSKRDFATWLLC
FCVSVLFGVEVGLFVSIVVTALHLLFLWARPEIRVKIEQLDEMQYIRVTP
SNGIYFPAINYLRERVLKACEQADFRITVVIDGQRISGMDYTAAQGISKL
SSDLCRQADASSSTLLILFRFPEHLQRLIDNTDNLVFCESENKVKEFLTQ
ESLRNGYINLKEHIRASIDLGYKIDID*

BS09589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5404-PA 627 CG5404-PA 1..627 1..627 3173 100 Plus
CG6125-PC 611 CG6125-PC 45..601 36..601 1035 38.9 Plus
CG6125-PB 611 CG6125-PB 45..601 36..601 1035 38.9 Plus
CG6125-PA 640 CG6125-PA 74..630 36..601 1035 38.9 Plus
CG6928-PD 579 CG6928-PD 3..533 38..556 803 32.7 Plus