Clone BS09590 Report

Search the DGRC for BS09590

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:95
Well:90
Vector:pDNR-Dual
Associated Gene/Transcriptbetaggt-II-RA
Protein status:BS09590.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09590.3prime Sequence

893 bp (869 high quality bases) assembled on 2006-04-19

> BS09590.3prime
ATGGTCTAGAAAGCTTTCATGGCCTCGGCAATAGTTGCGGCTTGATGCCC
AGCCGGTCGATGATGTACTGCGGCATGCAGAGCGTTGGGTTGATGGCCTT
CAGGCCGGAATGTCCCAGTAGCGAGAGTCCGCCGATGCCGAACAGCGTGT
GGAATATGTCCGGCATGTTGCCAGTTCTGTCCGAGAAGCCACCGGTCTCC
GTGTCCTGGCACGACAGTATGAACTGCTGCAGCTTCTCCGAGCTGATCCA
GTGCAGGCGGCCCATGATGGTGAGCGAGGCGAGCACCCACCACGAATAGC
ATACATCCGGCAGCTTCTCGGGCCGTCCATTTAGCCCACCGGAGGGCAGC
TGCCGCTCGCAGAGCCACCAGCCCAGTTTGTCCACGTCGAGCAGATGCAG
GCGATGGGTCAGCGAGAAGAAGCCGACGCAGCAGTAGATGAGCCCCGCAT
GCGACTCGGCGCCCGGCTTGGAACCGAATCCACCGTCCGTCTGATTGCAG
CACGAGAGCACGAACTTGACCGCCTTCTCCACGTCGATGGTCTGCTCCAT
GCGGCCGAGCAGCGTTAGGGAGGCCACCGCACAGAAGCTGAACCTGGTGT
CCACCTCGCCCCACTTGTCGCCAAAGAAGCTGCCGTCGGGCTGCTGCAGT
CCGACCACGAATCGGACCACCGCCTCGCGGTCGATCTCCTCGAGGGCGTC
GTAGGTGCAGAGGATCTGGATGGCCGACAGGGTGTACAGCAGGTGGGGAT
CGTGGCCCTCGCAGGGTGCGAATCCGCCCGTGTTCGGACACTGACAACGC
TTCACAAACTCGATGATGGACTTGCGCTCCAATCGCTCCAGCTGGCCCCA
TATGTCCAGGGCAGTGGTGCCCCCATAGATGCCCGACATGCGC

BS09590.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG18627-PA 1044 betaggt-II-RA 213..1044 848..17 4160 100 Minus
CG18627-PA 1044 betaggt-II-RA 168..209 893..852 185 97.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 320..1196 893..17 4325 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879431..2879880 893..444 2190 99.1 Minus
2L 23513712 2L 2880043..2880471 445..17 2145 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:49 has no hits.

BS09590.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:34 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 168..1044 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:09 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 168..1044 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:20 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 320..1204 9..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:57 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 320..1204 9..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:57 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2879431..2879879 445..893 99 -> Minus
2L 2880044..2880479 9..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:20 Download gff for BS09590.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879431..2879879 445..893 99 -> Minus
arm_2L 2880044..2880479 9..444 99   Minus

BS09590.5prime Sequence

839 bp (812 high quality bases) assembled on 2006-04-19

> BS09590.5prime
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTAAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGG

BS09590.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18627-PA 1044 betaggt-II-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 153..975 17..839 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879264..2879880 17..633 3085 100 Plus
2L 23513712 2L 2880043..2880250 632..839 1040 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:29:49 has no hits.

BS09590.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:35 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:11 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18627-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:51 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 146..975 7..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:54 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 146..975 7..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:54 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2880044..2880250 633..839 100   Plus
2L 2879257..2879879 7..632 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:51 Download gff for BS09590.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879257..2879879 7..632 99 -> Plus
arm_2L 2880044..2880250 633..839 100   Plus

BS09590.complete Sequence

1076 bp (1076 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636448

> BS09590.complete
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTAAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAG
AACTGGCAACATGCCGGACATATTCCACACGCTGTTCGGCATCGGCGGAC
TCTCGCTACTGGGACATTCCGGCCTGAAGGCCATCAACCCAACGCTCTGC
ATGCCGCAGTACATCATCGACCGGCTGGGCATCAAGCCGCAACTATTGCC
GAGGCCATGAAAGCTTTCTAGACCAT

BS09590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1044 CG18627-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1433 CG18627-RA 153..1196 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879264..2879880 17..633 3085 100 Plus
2L 23513712 2L 2880043..2880471 632..1060 2145 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:36:58 has no hits.

BS09590.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:55 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:39 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 134..1192 7..1068 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:35 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 153..1195 17..1059 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:56 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 134..1192 7..1068 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:51 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 153..1195 17..1059 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:51 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879264..2879879 17..632 100 -> Plus
2L 2880044..2880470 633..1059 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:35 Download gff for BS09590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879264..2879879 17..632 100 -> Plus
arm_2L 2880044..2880470 633..1059 100   Plus

BS09590.pep Sequence

Translation from 16 to 1059

> BS09590.pep
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRP*

BS09590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-PA 347 CG18627-PA 1..347 1..347 1899 100 Plus
CG17565-PA 419 CG17565-PA 91..363 61..318 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 37..336 57..329 335 32.1 Plus
betaggt-I-PA 395 CG3469-PA 37..336 57..329 335 32.1 Plus