Clone Sequence Records
BS09590.3prime Sequence
893 bp (869 high quality bases) assembled on 2006-04-19
> BS09590.3prime
ATGGTCTAGAAAGCTTTCATGGCCTCGGCAATAGTTGCGGCTTGATGCCC
AGCCGGTCGATGATGTACTGCGGCATGCAGAGCGTTGGGTTGATGGCCTT
CAGGCCGGAATGTCCCAGTAGCGAGAGTCCGCCGATGCCGAACAGCGTGT
GGAATATGTCCGGCATGTTGCCAGTTCTGTCCGAGAAGCCACCGGTCTCC
GTGTCCTGGCACGACAGTATGAACTGCTGCAGCTTCTCCGAGCTGATCCA
GTGCAGGCGGCCCATGATGGTGAGCGAGGCGAGCACCCACCACGAATAGC
ATACATCCGGCAGCTTCTCGGGCCGTCCATTTAGCCCACCGGAGGGCAGC
TGCCGCTCGCAGAGCCACCAGCCCAGTTTGTCCACGTCGAGCAGATGCAG
GCGATGGGTCAGCGAGAAGAAGCCGACGCAGCAGTAGATGAGCCCCGCAT
GCGACTCGGCGCCCGGCTTGGAACCGAATCCACCGTCCGTCTGATTGCAG
CACGAGAGCACGAACTTGACCGCCTTCTCCACGTCGATGGTCTGCTCCAT
GCGGCCGAGCAGCGTTAGGGAGGCCACCGCACAGAAGCTGAACCTGGTGT
CCACCTCGCCCCACTTGTCGCCAAAGAAGCTGCCGTCGGGCTGCTGCAGT
CCGACCACGAATCGGACCACCGCCTCGCGGTCGATCTCCTCGAGGGCGTC
GTAGGTGCAGAGGATCTGGATGGCCGACAGGGTGTACAGCAGGTGGGGAT
CGTGGCCCTCGCAGGGTGCGAATCCGCCCGTGTTCGGACACTGACAACGC
TTCACAAACTCGATGATGGACTTGCGCTCCAATCGCTCCAGCTGGCCCCA
TATGTCCAGGGCAGTGGTGCCCCCATAGATGCCCGACATGCGC
BS09590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18627-PA | 1044 | betaggt-II-RA | 213..1044 | 848..17 | 4160 | 100 | Minus |
CG18627-PA | 1044 | betaggt-II-RA | 168..209 | 893..852 | 185 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 320..1196 | 893..17 | 4325 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879431..2879880 | 893..444 | 2190 | 99.1 | Minus |
2L | 23513712 | 2L | 2880043..2880471 | 445..17 | 2145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:49 has no hits.
BS09590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:34 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 168..1044 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:09 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 168..1044 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:11:20 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 320..1204 | 9..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:57 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 320..1204 | 9..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:57 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2879431..2879879 | 445..893 | 99 | -> | Minus |
2L | 2880044..2880479 | 9..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:11:20 Download gff for
BS09590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879431..2879879 | 445..893 | 99 | -> | Minus |
arm_2L | 2880044..2880479 | 9..444 | 99 | | Minus |
BS09590.5prime Sequence
839 bp (812 high quality bases) assembled on 2006-04-19
> BS09590.5prime
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTAAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGG
BS09590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18627-PA | 1044 | betaggt-II-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 153..975 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879264..2879880 | 17..633 | 3085 | 100 | Plus |
2L | 23513712 | 2L | 2880043..2880250 | 632..839 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:29:49 has no hits.
BS09590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:35 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:11 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18627-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:51 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 146..975 | 7..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:54 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 146..975 | 7..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:54 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2880044..2880250 | 633..839 | 100 | | Plus |
2L | 2879257..2879879 | 7..632 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:51 Download gff for
BS09590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879257..2879879 | 7..632 | 99 | -> | Plus |
arm_2L | 2880044..2880250 | 633..839 | 100 | | Plus |
BS09590.complete Sequence
1076 bp (1076 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636448
> BS09590.complete
GAAGTTATCAGTCGACATGGACTTCACGACCTTCGTAAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAG
AACTGGCAACATGCCGGACATATTCCACACGCTGTTCGGCATCGGCGGAC
TCTCGCTACTGGGACATTCCGGCCTGAAGGCCATCAACCCAACGCTCTGC
ATGCCGCAGTACATCATCGACCGGCTGGGCATCAAGCCGCAACTATTGCC
GAGGCCATGAAAGCTTTCTAGACCAT
BS09590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1044 | CG18627-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-RA | 1433 | CG18627-RA | 153..1196 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2879264..2879880 | 17..633 | 3085 | 100 | Plus |
2L | 23513712 | 2L | 2880043..2880471 | 632..1060 | 2145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:58 has no hits.
BS09590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:55 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:39 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 134..1192 | 7..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:35 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 153..1195 | 17..1059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:56 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 134..1192 | 7..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:51 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaggt-II-RA | 153..1195 | 17..1059 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:51 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2879264..2879879 | 17..632 | 100 | -> | Plus |
2L | 2880044..2880470 | 633..1059 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:35 Download gff for
BS09590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2879264..2879879 | 17..632 | 100 | -> | Plus |
arm_2L | 2880044..2880470 | 633..1059 | 100 | | Plus |
BS09590.pep Sequence
Translation from 16 to 1059
> BS09590.pep
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRP*
BS09590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaggt-II-PA | 347 | CG18627-PA | 1..347 | 1..347 | 1899 | 100 | Plus |
CG17565-PA | 419 | CG17565-PA | 91..363 | 61..318 | 345 | 31.4 | Plus |
betaggt-I-PB | 376 | CG3469-PB | 37..336 | 57..329 | 335 | 32.1 | Plus |
betaggt-I-PA | 395 | CG3469-PA | 37..336 | 57..329 | 335 | 32.1 | Plus |