Clone Sequence Records
BS09596.3prime Sequence
923 bp (853 high quality bases) assembled on 2006-04-19
> BS09596.3prime
ATGGTCTAGAAAGCTTTTACGCGCGTTTGGGCTTTTCAAGAGGCTCATCG
TCACTGGAGTAGTCGGATGCGGGACTGTGAGCAACCTTTTTCCCCCTAGG
AGGTTCTTCATCACTGGACTCGTCCAACAGGTGTGTTCCAGCACCGATCA
ATACATTGGCGATCTTTTCTGTTCGGGCGGAGATTGCAACAGGATCCTCT
GTTGAAGTGGACAGCACGGCAGCCGTGATAAGCGTCGACGTGGAGGGCGC
GTCCAGTTCAGGTTCCTGCTCATTGAGCAAGCCATGATTGGCCTCCCGCC
GCTTGGTCACTACAACTGCCGTAATATAGAAGGTGAAAATGGGCAGCAGG
ACAACTACGCCAACGGCGATGAGAAAATTGGTCAGCTTCACCTCGCGTTG
ACAGCATTTCAGCGTTTTCGACCAATTCAGACGAGTCCGGTTCATATTGT
CCTGCAGATCGAAGCACACACTTCCACCGACTTTCTTTTCCATGCTAAGG
TAGAAATCATTTAGACTCACGTAATCATTTTTGCACTTGAAGCAAACTAA
ATCCGAACTAGCAGATTCTAAGCAATTTTGCAACTTTGTTGAGTTATCGC
TGTATACAATCCAAAAATTATCCCTGAAGCAATTTTCGCAGTTGGCCTTT
TGCCACAGGCTAGTTAGGATTCCTTGGGTGGTAGCCACTATATTGATCCT
GTCCGAGTTCAGATAACGCTTGGAACAGTTGGCGTTCGCAATTAGGTTTC
CGTAATCATTGGTGAGATTGCGGTAGAGATCGACGCAGCCCTCACACAAA
TTCACGGGCACTGATTTTGTGGTGGCGCAGTAGATGAACTTGCTCTGTGC
ATCGCCAAGATCGGCGAGCAATTTCTCGCAGGAATGGTTCTTTCCGGCCA
GCAGCATGTTAAACTGTCCACTT
BS09596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 948 | CG14969-RA | 42..948 | 923..17 | 4485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 404..1310 | 923..17 | 4505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334516 | 634..923 | 1420 | 99.3 | Plus |
3L | 28110227 | 3L | 3333445..3333693 | 17..265 | 1245 | 100 | Plus |
3L | 28110227 | 3L | 3333984..3334171 | 446..633 | 940 | 100 | Plus |
3L | 28110227 | 3L | 3333745..3333925 | 265..445 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:26:36 has no hits.
BS09596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:48 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 42..948 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:26 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 42..948 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:18:12 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 404..1310 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:56:54 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 404..1310 | 17..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:56:54 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333445..3333692 | 17..264 | 100 | <- | Plus |
3L | 3333745..3333925 | 265..445 | 100 | <- | Plus |
3L | 3333984..3334171 | 446..633 | 100 | <- | Plus |
3L | 3334227..3334516 | 634..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:18:12 Download gff for
BS09596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3333445..3333692 | 17..264 | 100 | <- | Plus |
arm_3L | 3333745..3333925 | 265..445 | 100 | <- | Plus |
arm_3L | 3333984..3334171 | 446..633 | 100 | <- | Plus |
arm_3L | 3334227..3334516 | 634..923 | 99 | | Plus |
BS09596.5prime Sequence
792 bp (791 high quality bases) assembled on 2006-04-19
> BS09596.5prime
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGT
BS09596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 948 | CG14969-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 363..1138 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334557 | 347..17 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 3333984..3334171 | 535..348 | 940 | 100 | Minus |
3L | 28110227 | 3L | 3333745..3333925 | 716..536 | 905 | 100 | Minus |
3L | 28110227 | 3L | 3333617..3333693 | 792..716 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:26:45 has no hits.
BS09596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:49 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:28 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:34:48 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1138 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:53 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1138 | 17..792 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:53 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333617..3333692 | 717..792 | 100 | <- | Minus |
3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
3L | 3334227..3334557 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:34:48 Download gff for
BS09596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3333617..3333692 | 717..792 | 100 | <- | Minus |
arm_3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
arm_3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
arm_3L | 3334227..3334557 | 17..347 | 100 | | Minus |
BS09596.complete Sequence
980 bp (980 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636449
> BS09596.complete
GAAGTTATCAGTCGACATGCGGAGTTACATTGCACTCTTGGGGCTTATCC
TAACTCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCC
TGCGAGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTA
CTGCGCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCG
ATCTCTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCC
AACTGTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTAC
CACCCAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATT
GCTTCAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTG
CAAAATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAA
AAATGATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAG
TCGGTGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGT
CTGAATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGAC
CAATTTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCT
TCTATATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGC
TTGCTCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCT
TATCACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCT
CCGCCCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGAACACAC
CTGTTGGACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAGGTTGC
TCACAGTCCCGCATCCGACTACTCCAGTGACGATGAGCCTCTTGAAAAGC
CCAAACGCGCGTAAAAGCTTTCTAGACCAT
BS09596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 948 | CG14969-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-RA | 1636 | CG14969-RA | 363..1310 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3334227..3334557 | 347..17 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 3333445..3333693 | 964..716 | 1245 | 100 | Minus |
3L | 28110227 | 3L | 3333984..3334171 | 535..348 | 940 | 100 | Minus |
3L | 28110227 | 3L | 3333745..3333925 | 716..536 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:26 has no hits.
BS09596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:53 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:09 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1310 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:40 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1308 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:54 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1310 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:00 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14969-RA | 363..1308 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:00 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3333447..3333692 | 717..962 | 100 | <- | Minus |
3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
3L | 3334227..3334557 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:40 Download gff for
BS09596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3333447..3333692 | 717..962 | 100 | <- | Minus |
arm_3L | 3333745..3333925 | 536..716 | 100 | <- | Minus |
arm_3L | 3333984..3334171 | 348..535 | 100 | <- | Minus |
arm_3L | 3334227..3334557 | 17..347 | 100 | | Minus |
BS09596.pep Sequence
Translation from 16 to 963
> BS09596.pep
MRSYIALLGLILTLSGQFNMLLAGKKHSCEKLLADLGDAQSKFIYCATTK
SVPVNLCEGCVDLYRNLTNDYGNLIANANCSKRYLNSDRINIVATTQGIL
TSLWQKANCENCFRDNFWIVYSDNSTKLQNCLESASSDLVCFKCKNDYVS
LNDFYLSMEKKVGGSVCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIA
VGVVVLLPIFTFYITAVVVTKRREANHGLLNEQEPELDAPSTSTLITAAV
LSTSTEDPVAISARTEKIANVLIGAGTHLLDESSDEEPPRGKKVAHSPAS
DYSSDDEPLEKPKRA*
BS09596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14969-PA | 315 | CG14969-PA | 1..315 | 1..315 | 1638 | 100 | Plus |