Clone Sequence Records
BS09605.3prime Sequence
999 bp (823 high quality bases) assembled on 2006-04-19
> BS09605.3prime
ATGGTCTAGAAAGCTTTCATGTGGGGCACTTGCCGTAGATGGTCTTCCAG
TTGTTGGGATGGTTGTAGCCCAGCAGGATGGGCAAGTGCAGGAACAGCGT
GATATGTTCGCCTTGTATCGACGTGGACACCTTGACCCACTTCCGCAGCC
ACTCGATCATGGCCTCGCTGCTCAGGCTGTCGGGATTCAATCCGCGCAGA
TAGCAGGAGTAGCGCAAAGCATCCGGTGTCAGGTTGTGAACGCCACCCTC
GCGGGTTATGGCCTGGTCCATGTAGTGCACCAGGAAGGCGTGCTCGTGGA
GCCGATGTCGCTTGAAGATGCTACTGGGCAGTCCATGAAGGTTGACTAGG
TTTCTAACGTGCTTCCGCGACATTCCCAGCAGGGAATATGGTCCTTCGGC
GAATATGTCTTTGACATCGATGAGCATCTCAGGCGTGGGGTGTGTGCCGC
TGCCCAGCTGGCCCAGGATGTCAGCAAAAGCCGAGTGCTTGGGATGCGAT
GCCGTCGCTTTGAGCTTGTCCTGCAGGCAGCGAAAGACGTCCTTGTTATT
GCATAATCGCCGCTTCATGTAGTAGCTCTGGAACTCGGAGCGCTGCTGCG
GAGTCCAGAAATGGGCAGTGAGAAAGGAGCGGGGGTAATAAAAGACGAGG
GGAAAGAACGCATAGCCCACCATGGGCAGGGAGCAGCCGATCAGAGCTGG
TGCCACCTTCATCATGTCCCTTGGCATCTGCATGTACAGCTCCAGCTCCT
GGCGATTCAAAGCTCTTATGCCTTGAGGCGAATCATTGGCAATGCGGGGC
ATCTTGAGGAAACGTTTCATGTCGCCAAAAAAGTCCTTGACGCCATCGAA
GAACACCCTGTACAACTGCATGGCCTTGGGGAAGTTCTTTTCGAGCACTT
TGTCGTAGTTCTCACATAGTTGAAGTACCGGGTGAATATGTAGTCCTGCA
TATTGTCTCGCATCTGATCCCGTTTCGATTTCACAGTGTTCAGCTCCTT
BS09605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 1311 | CG5989-RA | 416..1307 | 912..21 | 4410 | 99.7 | Minus |
CG5989-PA | 1311 | CG5989-RA | 328..415 | 999..912 | 415 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RC | 1534 | CG5989-RC | 447..1430 | 999..17 | 4835 | 99.5 | Minus |
CG5989-RB | 1561 | CG5989-RB | 474..1457 | 999..17 | 4835 | 99.5 | Minus |
CG5989-RA | 1567 | CG5989-RA | 480..1463 | 999..17 | 4835 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8603265..8603620 | 645..999 | 1685 | 98.9 | Plus |
3L | 28110227 | 3L | 8602515..8602853 | 17..355 | 1680 | 99.7 | Plus |
3L | 28110227 | 3L | 8602915..8603203 | 356..644 | 1445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:13:14 has no hits.
BS09605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:56 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 328..1311 | 17..999 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:38 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 328..1311 | 17..999 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:23 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 480..1465 | 13..999 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:51 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 480..1465 | 13..999 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:51 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8602513..8602853 | 13..355 | 99 | <- | Plus |
3L | 8602915..8603203 | 356..644 | 100 | <- | Plus |
3L | 8603265..8603620 | 645..999 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:23 Download gff for
BS09605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8595613..8595953 | 13..355 | 99 | <- | Plus |
arm_3L | 8596015..8596303 | 356..644 | 100 | <- | Plus |
arm_3L | 8596365..8596720 | 645..999 | 98 | | Plus |
BS09605.5prime Sequence
973 bp (851 high quality bases) assembled on 2006-04-19
> BS09605.5prime
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GAACATATTCCCTGCTGGGAATG
BS09605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 1311 | CG5989-RA | 1..957 | 17..973 | 4760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1567 | CG5989-RA | 153..1109 | 17..973 | 4770 | 99.9 | Plus |
CG5989-RB | 1561 | CG5989-RB | 153..1103 | 17..973 | 4670 | 99.3 | Plus |
CG5989-RC | 1534 | CG5989-RC | 241..1076 | 138..973 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8603265..8603858 | 699..106 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 8602930..8603203 | 973..700 | 1355 | 99.6 | Minus |
3L | 28110227 | 3L | 8603906..8603997 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:15:28 has no hits.
BS09605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:59 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 1..957 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:40 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-PA | 1..957 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:13:51 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 149..1109 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:22 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 149..1109 | 9..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:22 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8603906..8604001 | 9..108 | 96 | | Minus |
3L | 8602930..8603203 | 700..973 | 99 | <- | Minus |
3L | 8603265..8603855 | 109..699 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:13:51 Download gff for
BS09605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8596030..8596303 | 700..973 | 99 | <- | Minus |
arm_3L | 8596365..8596955 | 109..699 | 100 | <- | Minus |
arm_3L | 8597006..8597101 | 9..108 | 96 | | Minus |
BS09605.complete Sequence
1343 bp assembled on 2009-02-12
> BS09605.complete
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GACCATATTCCCTGCTGGGAATGTCGCGGAAGCACGTTAGAAACCTAGTC
AACCTTCATGGACTGCCCAGTAGCATCTTCAAGCGACATCGGCTCCACGA
GCACGCCTTCCTGGTGCACTACATGGACCAGGCCATAACCCGCGAGGGTG
GCGTTCACAACCTGACACCGGATGCTTTGCGCTACTCCTGCTATCTGCGC
GGATTGAATCCCGACAGCCTGAGCAGCGAGGCCATGATCGAGTGGCTGCG
GAAGTGGGTCAAGGTGTCCACGTCGATACAAGGCGAACATATCACGCTGT
TCCTGCACTTGCCCATCCTGCTGGGCTACAACCATCCCAACAACTGGAAG
ACCATCTACGGCAAGTGCCCCACATGAAAGCTTTCTAGACCAT
BS09605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1311 | CG5989-PA | 1..1311 | 17..1327 | 6540 | 99.9 | Plus |
CG5989-RB | 1305 | CG5989-PB | 1..1305 | 17..1327 | 6415 | 99.5 | Plus |
CG5989-RC | 1278 | CG5989-PC | 89..1278 | 138..1327 | 5935 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-RA | 1567 | CG5989-RA | 153..1463 | 17..1327 | 6540 | 99.9 | Plus |
CG5989-RB | 1561 | CG5989-RB | 153..1457 | 17..1327 | 6415 | 99.5 | Plus |
CG5989-RC | 1534 | CG5989-RC | 241..1430 | 138..1327 | 5935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8603265..8603858 | 699..106 | 2970 | 100 | Minus |
3L | 28110227 | 3L | 8602515..8602853 | 1327..989 | 1680 | 99.7 | Minus |
3L | 28110227 | 3L | 8602915..8603203 | 988..700 | 1445 | 100 | Minus |
3L | 28110227 | 3L | 8603906..8603997 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:13:10 has no hits.
BS09605.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:21 Download gff for
BS09605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 149..1458 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:01 Download gff for
BS09605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 153..1462 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:01 Download gff for
BS09605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5989-RA | 153..1462 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:01 Download gff for
BS09605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8602915..8603203 | 700..988 | 100 | <- | Minus |
3L | 8602516..8602853 | 989..1326 | 99 | <- | Minus |
3L | 8603265..8603855 | 109..699 | 100 | <- | Minus |
3L | 8603906..8603997 | 17..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:01 Download gff for
BS09605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8595616..8595953 | 989..1326 | 99 | <- | Minus |
arm_3L | 8596015..8596303 | 700..988 | 100 | <- | Minus |
arm_3L | 8596365..8596955 | 109..699 | 100 | <- | Minus |
arm_3L | 8597006..8597097 | 17..108 | 100 | | Minus |
BS09605.pep Sequence
Translation from 16 to 1326
> BS09605.pep
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPT*
BS09605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5989-PA | 436 | CG5989-PA | 1..436 | 1..436 | 2333 | 100 | Plus |
CG5989-PB | 434 | CG5989-PB | 1..434 | 1..436 | 2312 | 99.5 | Plus |
CG5989-PC | 425 | CG5989-PC | 1..425 | 1..436 | 2252 | 97.5 | Plus |