Clone BS09605 Report

Search the DGRC for BS09605

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:96
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG5989-RA
Protein status:BS09605.pep: full length peptide match
Sequenced Size:1343

Clone Sequence Records

BS09605.3prime Sequence

999 bp (823 high quality bases) assembled on 2006-04-19

> BS09605.3prime
ATGGTCTAGAAAGCTTTCATGTGGGGCACTTGCCGTAGATGGTCTTCCAG
TTGTTGGGATGGTTGTAGCCCAGCAGGATGGGCAAGTGCAGGAACAGCGT
GATATGTTCGCCTTGTATCGACGTGGACACCTTGACCCACTTCCGCAGCC
ACTCGATCATGGCCTCGCTGCTCAGGCTGTCGGGATTCAATCCGCGCAGA
TAGCAGGAGTAGCGCAAAGCATCCGGTGTCAGGTTGTGAACGCCACCCTC
GCGGGTTATGGCCTGGTCCATGTAGTGCACCAGGAAGGCGTGCTCGTGGA
GCCGATGTCGCTTGAAGATGCTACTGGGCAGTCCATGAAGGTTGACTAGG
TTTCTAACGTGCTTCCGCGACATTCCCAGCAGGGAATATGGTCCTTCGGC
GAATATGTCTTTGACATCGATGAGCATCTCAGGCGTGGGGTGTGTGCCGC
TGCCCAGCTGGCCCAGGATGTCAGCAAAAGCCGAGTGCTTGGGATGCGAT
GCCGTCGCTTTGAGCTTGTCCTGCAGGCAGCGAAAGACGTCCTTGTTATT
GCATAATCGCCGCTTCATGTAGTAGCTCTGGAACTCGGAGCGCTGCTGCG
GAGTCCAGAAATGGGCAGTGAGAAAGGAGCGGGGGTAATAAAAGACGAGG
GGAAAGAACGCATAGCCCACCATGGGCAGGGAGCAGCCGATCAGAGCTGG
TGCCACCTTCATCATGTCCCTTGGCATCTGCATGTACAGCTCCAGCTCCT
GGCGATTCAAAGCTCTTATGCCTTGAGGCGAATCATTGGCAATGCGGGGC
ATCTTGAGGAAACGTTTCATGTCGCCAAAAAAGTCCTTGACGCCATCGAA
GAACACCCTGTACAACTGCATGGCCTTGGGGAAGTTCTTTTCGAGCACTT
TGTCGTAGTTCTCACATAGTTGAAGTACCGGGTGAATATGTAGTCCTGCA
TATTGTCTCGCATCTGATCCCGTTTCGATTTCACAGTGTTCAGCTCCTT

BS09605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 1311 CG5989-RA 416..1307 912..21 4410 99.7 Minus
CG5989-PA 1311 CG5989-RA 328..415 999..912 415 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RC 1534 CG5989-RC 447..1430 999..17 4835 99.5 Minus
CG5989-RB 1561 CG5989-RB 474..1457 999..17 4835 99.5 Minus
CG5989-RA 1567 CG5989-RA 480..1463 999..17 4835 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603620 645..999 1685 98.9 Plus
3L 28110227 3L 8602515..8602853 17..355 1680 99.7 Plus
3L 28110227 3L 8602915..8603203 356..644 1445 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:13:14 has no hits.

BS09605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:56 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 328..1311 17..999 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:38 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 328..1311 17..999 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:23 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 480..1465 13..999 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:51 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 480..1465 13..999 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:51 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8602513..8602853 13..355 99 <- Plus
3L 8602915..8603203 356..644 100 <- Plus
3L 8603265..8603620 645..999 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:23 Download gff for BS09605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8595613..8595953 13..355 99 <- Plus
arm_3L 8596015..8596303 356..644 100 <- Plus
arm_3L 8596365..8596720 645..999 98   Plus

BS09605.5prime Sequence

973 bp (851 high quality bases) assembled on 2006-04-19

> BS09605.5prime
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GAACATATTCCCTGCTGGGAATG

BS09605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 1311 CG5989-RA 1..957 17..973 4760 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1567 CG5989-RA 153..1109 17..973 4770 99.9 Plus
CG5989-RB 1561 CG5989-RB 153..1103 17..973 4670 99.3 Plus
CG5989-RC 1534 CG5989-RC 241..1076 138..973 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603858 699..106 2970 100 Minus
3L 28110227 3L 8602930..8603203 973..700 1355 99.6 Minus
3L 28110227 3L 8603906..8603997 108..17 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:15:28 has no hits.

BS09605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:14:59 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 1..957 17..973 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:26:40 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-PA 1..957 17..973 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:13:51 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 149..1109 9..973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:22 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 149..1109 9..973 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:22 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8603906..8604001 9..108 96   Minus
3L 8602930..8603203 700..973 99 <- Minus
3L 8603265..8603855 109..699 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:13:51 Download gff for BS09605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8596030..8596303 700..973 99 <- Minus
arm_3L 8596365..8596955 109..699 100 <- Minus
arm_3L 8597006..8597101 9..108 96   Minus

BS09605.complete Sequence

1343 bp assembled on 2009-02-12

> BS09605.complete
GAAGTTATCAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCG
CGATTCCGGCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTG
TGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTA
CGCAACGAAGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGG
CCGCCGAGATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGAT
GCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTC
CACACAGCCGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGC
TGGACACTGTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGAC
TACATATTCACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCT
CGAAAAGAACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATG
GCGTCAAGGACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGC
ATTGCCAATGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCT
GGAGCTGTACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTC
TGATCGGCTGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTC
TTTTATTACCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCA
GCGCTCCGAGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACA
AGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCAT
CCCAAGCACTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCAC
ACACCCCACGCCTGAGATGCTCATCGATGTCAAAGACATATTCGCCGAAG
GACCATATTCCCTGCTGGGAATGTCGCGGAAGCACGTTAGAAACCTAGTC
AACCTTCATGGACTGCCCAGTAGCATCTTCAAGCGACATCGGCTCCACGA
GCACGCCTTCCTGGTGCACTACATGGACCAGGCCATAACCCGCGAGGGTG
GCGTTCACAACCTGACACCGGATGCTTTGCGCTACTCCTGCTATCTGCGC
GGATTGAATCCCGACAGCCTGAGCAGCGAGGCCATGATCGAGTGGCTGCG
GAAGTGGGTCAAGGTGTCCACGTCGATACAAGGCGAACATATCACGCTGT
TCCTGCACTTGCCCATCCTGCTGGGCTACAACCATCCCAACAACTGGAAG
ACCATCTACGGCAAGTGCCCCACATGAAAGCTTTCTAGACCAT

BS09605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1311 CG5989-PA 1..1311 17..1327 6540 99.9 Plus
CG5989-RB 1305 CG5989-PB 1..1305 17..1327 6415 99.5 Plus
CG5989-RC 1278 CG5989-PC 89..1278 138..1327 5935 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-RA 1567 CG5989-RA 153..1463 17..1327 6540 99.9 Plus
CG5989-RB 1561 CG5989-RB 153..1457 17..1327 6415 99.5 Plus
CG5989-RC 1534 CG5989-RC 241..1430 138..1327 5935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603858 699..106 2970 100 Minus
3L 28110227 3L 8602515..8602853 1327..989 1680 99.7 Minus
3L 28110227 3L 8602915..8603203 988..700 1445 100 Minus
3L 28110227 3L 8603906..8603997 108..17 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:13:10 has no hits.

BS09605.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:21 Download gff for BS09605.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 149..1458 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:01 Download gff for BS09605.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 153..1462 17..1326 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:01 Download gff for BS09605.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 153..1462 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:01 Download gff for BS09605.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8602915..8603203 700..988 100 <- Minus
3L 8602516..8602853 989..1326 99 <- Minus
3L 8603265..8603855 109..699 100 <- Minus
3L 8603906..8603997 17..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:01 Download gff for BS09605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8595616..8595953 989..1326 99 <- Minus
arm_3L 8596015..8596303 700..988 100 <- Minus
arm_3L 8596365..8596955 109..699 100 <- Minus
arm_3L 8597006..8597097 17..108 100   Minus

BS09605.pep Sequence

Translation from 16 to 1326

> BS09605.pep
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPT*

BS09605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 436 CG5989-PA 1..436 1..436 2333 100 Plus
CG5989-PB 434 CG5989-PB 1..434 1..436 2312 99.5 Plus
CG5989-PC 425 CG5989-PC 1..425 1..436 2252 97.5 Plus